Wall clock time and date at job start Tue Mar 31 2020 14:43:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35904 * 116.99860 * 2 1 4 4 C 1.38752 * 120.05320 * 0.02742 * 3 2 1 5 5 C 1.38118 * 119.94213 * 179.97438 * 4 3 2 6 6 C 1.38294 * 120.05691 * 359.97438 * 5 4 3 7 7 C 1.50702 * 119.94487 * 179.97438 * 6 5 4 8 8 C 1.53001 * 109.47403 * 300.00495 * 7 6 5 9 9 C 1.53003 * 109.46674 * 60.00383 * 7 6 5 10 10 C 1.38242 * 120.10837 * 359.75729 * 6 5 4 11 11 C 1.38160 * 120.05692 * 0.49466 * 10 6 5 12 12 S 1.76204 * 120.03125 * 179.77501 * 11 10 6 13 13 O 1.42105 * 106.39972 * 1.18669 * 12 11 10 14 14 O 1.42098 * 106.40426 * 228.26842 * 12 11 10 15 15 N 1.65595 * 107.21987 * 114.72554 * 12 11 10 16 16 C 1.46508 * 119.99876 * 65.00402 * 15 12 11 17 17 C 1.52991 * 109.47282 * 164.99994 * 16 15 12 18 18 C 1.50702 * 109.47353 * 179.97438 * 17 16 15 19 19 H 1.07998 * 119.99589 * 0.02562 * 18 17 16 20 20 C 1.37872 * 120.00147 * 180.02562 * 18 17 16 21 21 N 1.31525 * 120.00120 * 359.97438 * 20 18 17 22 22 Si 1.86795 * 120.00281 * 179.97438 * 20 18 17 23 23 H 1.48509 * 109.46825 * 0.02562 * 22 20 18 24 24 H 1.48506 * 109.47292 * 119.99833 * 22 20 18 25 25 H 1.48498 * 109.47617 * 240.00107 * 22 20 18 26 26 H 1.09001 * 109.47102 * 299.99713 * 1 2 3 27 27 H 1.09001 * 109.47097 * 60.00135 * 1 2 3 28 28 H 1.09007 * 109.46738 * 179.97438 * 1 2 3 29 29 H 1.08000 * 120.03117 * 359.97438 * 4 3 2 30 30 H 1.08006 * 119.97536 * 180.02562 * 5 4 3 31 31 H 1.08996 * 109.46730 * 180.02562 * 7 6 5 32 32 H 1.09002 * 109.46847 * 59.99706 * 8 7 6 33 33 H 1.08992 * 109.46912 * 180.02562 * 8 7 6 34 34 H 1.09004 * 109.46855 * 300.00042 * 8 7 6 35 35 H 1.09000 * 109.46907 * 60.00333 * 9 7 6 36 36 H 1.09005 * 109.46596 * 179.97438 * 9 7 6 37 37 H 1.08993 * 109.47461 * 299.99953 * 9 7 6 38 38 H 1.07998 * 119.97346 * 180.25586 * 10 6 5 39 39 H 0.96997 * 120.00034 * 245.00430 * 15 12 11 40 40 H 1.09006 * 109.46715 * 285.00199 * 16 15 12 41 41 H 1.08993 * 109.46869 * 44.99478 * 16 15 12 42 42 H 1.09003 * 109.47593 * 300.00518 * 17 16 15 43 43 H 1.09006 * 109.47454 * 59.99767 * 17 16 15 44 44 H 0.96996 * 120.00100 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2913 2.3753 0.0006 5 6 1.9207 3.6047 0.0011 6 6 3.3018 3.6758 0.0016 7 6 3.9860 5.0186 0.0016 8 6 3.5752 5.8003 -1.2479 9 6 3.5744 5.8006 1.2507 10 6 4.0559 2.5172 0.0066 11 6 3.4311 1.2849 0.0009 12 16 4.3929 -0.1915 0.0013 13 8 5.7538 0.2162 0.0364 14 8 3.8561 -1.0204 -1.0204 15 7 4.1000 -0.9670 1.4348 16 6 2.7615 -1.4864 1.7265 17 6 2.8380 -2.4612 2.9031 18 6 1.4611 -2.9951 3.2036 19 1 0.6161 -2.6718 2.6138 20 6 1.2802 -3.8963 4.2312 21 7 2.3094 -4.2904 4.9491 22 14 -0.4265 -4.5575 4.6041 23 1 -1.4053 -3.9626 3.6587 24 1 -0.4289 -6.0349 4.4536 25 1 -0.8024 -4.2012 5.9958 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0278 -0.0005 29 1 0.2127 2.3203 0.0006 30 1 1.3338 4.5114 0.0020 31 1 5.0665 4.8758 0.0016 32 1 2.4946 5.9431 -1.2482 33 1 4.0704 6.7713 -1.2480 34 1 3.8684 5.2432 -2.1377 35 1 3.8670 5.2437 2.1408 36 1 4.0695 6.7717 1.2509 37 1 2.4938 5.9433 1.2503 38 1 5.1343 2.5752 0.0112 39 1 4.8146 -1.0772 2.0814 40 1 2.0987 -0.6597 1.9819 41 1 2.3741 -2.0050 0.8496 42 1 3.5009 -3.2879 2.6478 43 1 3.2255 -1.9425 3.7801 44 1 2.1820 -4.9241 5.6723 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001191713488.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:43:51 Heat of formation + Delta-G solvation = -105.870434 kcal Electronic energy + Delta-G solvation = -26590.063507 eV Core-core repulsion = 22827.249095 eV Total energy + Delta-G solvation = -3762.814412 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.45773 -38.37597 -36.75816 -35.45389 -35.24209 -34.99745 -32.69705 -31.49729 -29.59543 -29.03657 -27.39828 -27.23252 -24.42890 -23.87150 -22.66783 -21.06994 -20.75727 -18.93133 -18.48136 -17.36047 -16.68317 -16.37996 -16.12361 -15.94323 -15.34426 -15.22966 -14.67271 -14.52309 -14.32379 -13.89326 -13.83009 -13.75249 -13.54129 -13.01570 -12.75714 -12.49637 -12.41546 -12.25460 -11.83684 -11.74577 -11.68739 -11.55980 -11.53700 -11.34343 -11.21790 -11.09412 -10.98374 -10.91615 -10.59682 -10.52546 -10.33114 -9.54628 -9.44336 -9.22378 -8.78706 -8.38863 -8.31108 -6.06313 -4.09086 0.67686 0.92739 1.22514 3.12404 3.24893 3.27215 3.34909 3.37261 3.57654 4.03672 4.36061 4.41366 4.49628 4.66602 4.74954 4.89396 4.94110 5.06815 5.18790 5.23176 5.24678 5.30403 5.34927 5.39485 5.48987 5.55467 5.61342 5.67762 5.72159 5.90669 5.93005 5.98538 5.98955 6.03366 6.32850 6.36981 6.54506 6.66059 6.86205 7.13239 7.55583 7.61264 7.72551 7.93965 8.32342 8.96896 9.54764 11.05359 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.015504 B = 0.003607 C = 0.003345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1805.536262 B = 7760.060543 C = 8368.812589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.298 6.298 3 C 0.225 3.775 4 C -0.226 4.226 5 C -0.024 4.024 6 C -0.141 4.141 7 C -0.053 4.053 8 C -0.145 4.145 9 C -0.145 4.145 10 C 0.015 3.985 11 C -0.704 4.704 12 S 2.700 3.300 13 O -0.977 6.977 14 O -0.952 6.952 15 N -1.109 6.109 16 C 0.128 3.872 17 C 0.015 3.985 18 C -0.518 4.518 19 H 0.059 0.941 20 C 0.058 3.942 21 N -0.893 5.893 22 Si 0.894 3.106 23 H -0.273 1.273 24 H -0.284 1.284 25 H -0.285 1.285 26 H 0.062 0.938 27 H 0.057 0.943 28 H 0.112 0.888 29 H 0.136 0.864 30 H 0.128 0.872 31 H 0.081 0.919 32 H 0.055 0.945 33 H 0.058 0.942 34 H 0.057 0.943 35 H 0.058 0.942 36 H 0.058 0.942 37 H 0.055 0.945 38 H 0.146 0.854 39 H 0.415 0.585 40 H 0.051 0.949 41 H 0.072 0.928 42 H 0.025 0.975 43 H 0.021 0.979 44 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.934 19.515 -10.040 21.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.209 6.209 3 C 0.176 3.824 4 C -0.246 4.246 5 C -0.042 4.042 6 C -0.142 4.142 7 C -0.071 4.071 8 C -0.202 4.202 9 C -0.203 4.203 10 C -0.004 4.004 11 C -0.790 4.790 12 S 2.787 3.213 13 O -0.968 6.968 14 O -0.941 6.941 15 N -0.871 5.871 16 C 0.003 3.997 17 C -0.023 4.023 18 C -0.557 4.557 19 H 0.077 0.923 20 C -0.144 4.144 21 N -0.532 5.532 22 Si 0.722 3.278 23 H -0.197 1.197 24 H -0.210 1.210 25 H -0.211 1.211 26 H 0.081 0.919 27 H 0.075 0.925 28 H 0.131 0.869 29 H 0.154 0.846 30 H 0.146 0.854 31 H 0.099 0.901 32 H 0.074 0.926 33 H 0.077 0.923 34 H 0.076 0.924 35 H 0.077 0.923 36 H 0.077 0.923 37 H 0.074 0.926 38 H 0.164 0.836 39 H 0.249 0.751 40 H 0.069 0.931 41 H 0.090 0.910 42 H 0.043 0.957 43 H 0.040 0.960 44 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -0.452 18.951 -10.706 21.771 hybrid contribution -1.479 0.203 0.966 1.778 sum -1.931 19.155 -9.741 21.576 Atomic orbital electron populations 1.23219 0.77006 1.05425 1.01287 1.86349 1.22815 1.25370 1.86348 1.18405 0.90582 0.85323 0.88067 1.21309 1.00422 0.92189 1.10632 1.20992 0.94078 0.97013 0.92150 1.19823 0.93685 0.94927 1.05813 1.20068 0.99959 0.91281 0.95810 1.21879 1.01450 0.99703 0.97196 1.21881 1.01453 0.99696 0.97241 1.20698 1.00251 0.89554 0.89887 1.30305 1.04362 1.20171 1.24115 1.01640 0.72670 0.73328 0.73619 1.93529 1.32658 1.83582 1.86988 1.93581 1.80151 1.64960 1.55455 1.55460 1.20902 1.72368 1.38382 1.21682 0.79200 0.97549 1.01266 1.19330 0.97893 0.93609 0.91517 1.21098 0.93475 1.25433 1.15719 0.92317 1.25010 0.96879 0.96398 0.96115 1.69973 1.29767 1.32834 1.20585 0.86508 0.84373 0.78828 0.78069 1.19711 1.20967 1.21070 0.91923 0.92475 0.86946 0.84585 0.85387 0.90086 0.92615 0.92322 0.92417 0.92264 0.92337 0.92605 0.83630 0.75073 0.93098 0.90955 0.95693 0.96018 0.92941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 9.81 101.05 0.99 1.28 16 2 O -0.30 -4.63 5.56 -29.14 -0.16 -4.79 16 3 C 0.22 3.33 6.31 -39.22 -0.25 3.08 16 4 C -0.23 -2.67 9.04 -39.44 -0.36 -3.03 16 5 C -0.02 -0.25 8.70 -39.60 -0.34 -0.60 16 6 C -0.14 -1.57 4.78 -104.60 -0.50 -2.07 16 7 C -0.05 -0.45 3.09 -91.77 -0.28 -0.73 16 8 C -0.15 -1.05 9.01 37.16 0.33 -0.72 16 9 C -0.15 -1.11 9.01 37.16 0.33 -0.77 16 10 C 0.02 0.20 9.17 -39.61 -0.36 -0.16 16 11 C -0.70 -10.85 5.90 -39.44 -0.23 -11.08 16 12 S 2.70 47.29 5.46 -107.50 -0.59 46.70 16 13 O -0.98 -17.83 16.97 -57.17 -0.97 -18.80 16 14 O -0.95 -19.40 16.77 -62.48 -1.05 -20.44 16 15 N -1.11 -20.08 6.00 -10.61 -0.06 -20.15 16 16 C 0.13 2.63 4.44 -4.04 -0.02 2.61 16 17 C 0.02 0.38 5.11 -27.89 -0.14 0.24 16 18 C -0.52 -14.01 9.11 -34.44 -0.31 -14.32 16 19 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 20 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 21 N -0.89 -26.12 13.29 55.43 0.74 -25.38 16 22 Si 0.89 20.91 29.54 -169.99 -5.02 15.89 16 23 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 24 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 25 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 26 H 0.06 0.63 7.66 -51.93 -0.40 0.23 16 27 H 0.06 0.51 7.66 -51.93 -0.40 0.11 16 28 H 0.11 1.24 8.14 -51.92 -0.42 0.81 16 29 H 0.14 1.25 6.30 -52.49 -0.33 0.92 16 30 H 0.13 0.98 7.09 -52.48 -0.37 0.61 16 31 H 0.08 0.66 7.87 -51.93 -0.41 0.26 16 32 H 0.05 0.37 7.39 -51.93 -0.38 -0.01 16 33 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 36 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 37 H 0.05 0.39 7.38 -51.93 -0.38 0.01 16 38 H 0.15 1.76 7.22 -52.49 -0.38 1.38 16 39 H 0.41 6.90 8.65 -34.47 -0.30 6.60 16 40 H 0.05 0.99 6.65 -51.93 -0.35 0.65 16 41 H 0.07 1.53 7.13 -51.93 -0.37 1.16 16 42 H 0.02 0.66 8.14 -51.93 -0.42 0.24 16 43 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 44 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 LS Contribution 367.91 15.07 5.54 5.54 Total: -1.00 -33.92 367.91 -9.38 -43.29 By element: Atomic # 1 Polarization: 9.47 SS G_CDS: -6.57 Total: 2.90 kcal Atomic # 6 Polarization: -23.53 SS G_CDS: -1.24 Total: -24.77 kcal Atomic # 7 Polarization: -46.20 SS G_CDS: 0.67 Total: -45.53 kcal Atomic # 8 Polarization: -41.85 SS G_CDS: -2.18 Total: -44.03 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Atomic # 16 Polarization: 47.29 SS G_CDS: -0.59 Total: 46.70 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -33.92 -9.38 -43.29 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001191713488.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.576 kcal (2) G-P(sol) polarization free energy of solvation -33.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.294 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds