Wall clock time and date at job start Tue Mar 31 2020 14:43:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35904 * 116.99860 * 2 1 4 4 C 1.38752 * 120.05320 * 0.02742 * 3 2 1 5 5 C 1.38118 * 119.94213 * 179.97438 * 4 3 2 6 6 C 1.38294 * 120.05691 * 359.97438 * 5 4 3 7 7 C 1.50702 * 119.94487 * 179.97438 * 6 5 4 8 8 C 1.53001 * 109.47403 * 300.00495 * 7 6 5 9 9 C 1.53003 * 109.46674 * 60.00383 * 7 6 5 10 10 C 1.38242 * 120.10837 * 359.75729 * 6 5 4 11 11 C 1.38160 * 120.05692 * 0.49466 * 10 6 5 12 12 S 1.76204 * 120.03125 * 179.77501 * 11 10 6 13 13 O 1.42105 * 106.39972 * 1.18669 * 12 11 10 14 14 O 1.42098 * 106.40426 * 228.26842 * 12 11 10 15 15 N 1.65595 * 107.21987 * 114.72554 * 12 11 10 16 16 C 1.46508 * 119.99876 * 65.00402 * 15 12 11 17 17 C 1.52991 * 109.47282 * 164.99994 * 16 15 12 18 18 C 1.50702 * 109.47353 * 179.97438 * 17 16 15 19 19 H 1.07998 * 119.99589 * 0.02562 * 18 17 16 20 20 C 1.37872 * 120.00147 * 180.02562 * 18 17 16 21 21 N 1.31525 * 120.00120 * 359.97438 * 20 18 17 22 22 Si 1.86795 * 120.00281 * 179.97438 * 20 18 17 23 23 H 1.48509 * 109.46825 * 0.02562 * 22 20 18 24 24 H 1.48506 * 109.47292 * 119.99833 * 22 20 18 25 25 H 1.48498 * 109.47617 * 240.00107 * 22 20 18 26 26 H 1.09001 * 109.47102 * 299.99713 * 1 2 3 27 27 H 1.09001 * 109.47097 * 60.00135 * 1 2 3 28 28 H 1.09007 * 109.46738 * 179.97438 * 1 2 3 29 29 H 1.08000 * 120.03117 * 359.97438 * 4 3 2 30 30 H 1.08006 * 119.97536 * 180.02562 * 5 4 3 31 31 H 1.08996 * 109.46730 * 180.02562 * 7 6 5 32 32 H 1.09002 * 109.46847 * 59.99706 * 8 7 6 33 33 H 1.08992 * 109.46912 * 180.02562 * 8 7 6 34 34 H 1.09004 * 109.46855 * 300.00042 * 8 7 6 35 35 H 1.09000 * 109.46907 * 60.00333 * 9 7 6 36 36 H 1.09005 * 109.46596 * 179.97438 * 9 7 6 37 37 H 1.08993 * 109.47461 * 299.99953 * 9 7 6 38 38 H 1.07998 * 119.97346 * 180.25586 * 10 6 5 39 39 H 0.96997 * 120.00034 * 245.00430 * 15 12 11 40 40 H 1.09006 * 109.46715 * 285.00199 * 16 15 12 41 41 H 1.08993 * 109.46869 * 44.99478 * 16 15 12 42 42 H 1.09003 * 109.47593 * 300.00518 * 17 16 15 43 43 H 1.09006 * 109.47454 * 59.99767 * 17 16 15 44 44 H 0.96996 * 120.00100 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2913 2.3753 0.0006 5 6 1.9207 3.6047 0.0011 6 6 3.3018 3.6758 0.0016 7 6 3.9860 5.0186 0.0016 8 6 3.5752 5.8003 -1.2479 9 6 3.5744 5.8006 1.2507 10 6 4.0559 2.5172 0.0066 11 6 3.4311 1.2849 0.0009 12 16 4.3929 -0.1915 0.0013 13 8 5.7538 0.2162 0.0364 14 8 3.8561 -1.0204 -1.0204 15 7 4.1000 -0.9670 1.4348 16 6 2.7615 -1.4864 1.7265 17 6 2.8380 -2.4612 2.9031 18 6 1.4611 -2.9951 3.2036 19 1 0.6161 -2.6718 2.6138 20 6 1.2802 -3.8963 4.2312 21 7 2.3094 -4.2904 4.9491 22 14 -0.4265 -4.5575 4.6041 23 1 -1.4053 -3.9626 3.6587 24 1 -0.4289 -6.0349 4.4536 25 1 -0.8024 -4.2012 5.9958 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0278 -0.0005 29 1 0.2127 2.3203 0.0006 30 1 1.3338 4.5114 0.0020 31 1 5.0665 4.8758 0.0016 32 1 2.4946 5.9431 -1.2482 33 1 4.0704 6.7713 -1.2480 34 1 3.8684 5.2432 -2.1377 35 1 3.8670 5.2437 2.1408 36 1 4.0695 6.7717 1.2509 37 1 2.4938 5.9433 1.2503 38 1 5.1343 2.5752 0.0112 39 1 4.8146 -1.0772 2.0814 40 1 2.0987 -0.6597 1.9819 41 1 2.3741 -2.0050 0.8496 42 1 3.5009 -3.2879 2.6478 43 1 3.2255 -1.9425 3.7801 44 1 2.1820 -4.9241 5.6723 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001191713488.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:43:50 Heat of formation + Delta-G solvation = -128.848456 kcal Electronic energy + Delta-G solvation = -26591.059909 eV Core-core repulsion = 22827.249095 eV Total energy + Delta-G solvation = -3763.810814 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.42254 -39.31259 -38.20576 -36.98083 -36.91958 -35.77614 -34.70102 -32.45041 -31.00015 -30.44029 -28.10509 -27.93774 -26.39459 -24.81346 -23.58338 -22.91894 -21.65307 -20.25961 -19.54704 -18.78391 -18.21123 -17.79030 -17.43175 -17.09033 -16.60474 -16.38187 -16.16596 -15.55350 -15.42997 -15.36543 -15.18266 -14.57116 -14.48869 -14.37082 -13.76600 -13.51478 -13.37783 -13.28645 -13.21946 -13.17616 -13.10437 -12.99164 -12.95757 -12.73304 -12.40657 -12.32267 -12.18903 -12.06679 -11.79267 -11.67138 -11.43831 -11.39755 -11.26411 -10.61263 -10.46137 -10.25426 -9.28051 -8.18012 -6.28529 -0.58437 -0.19532 0.27975 1.43800 1.45018 1.57358 2.01825 2.18309 2.42353 2.46191 2.70830 3.16946 3.32258 3.72220 3.73616 3.91938 4.04471 4.24785 4.31153 4.33476 4.34402 4.41390 4.45589 4.56336 4.62198 4.69318 4.78551 4.85477 4.86567 4.91515 5.00875 5.03242 5.05825 5.11133 5.20875 5.32308 5.43693 5.53355 5.54000 5.66323 5.67190 5.84294 6.05652 6.18591 6.26741 6.86830 7.40296 8.94716 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.015504 B = 0.003607 C = 0.003345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1805.536262 B = 7760.060543 C = 8368.812589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.329 6.329 3 C 0.204 3.796 4 C -0.223 4.223 5 C -0.015 4.015 6 C -0.136 4.136 7 C -0.054 4.054 8 C -0.143 4.143 9 C -0.144 4.144 10 C -0.002 4.002 11 C -0.718 4.718 12 S 2.712 3.288 13 O -0.990 6.990 14 O -0.986 6.986 15 N -1.113 6.113 16 C 0.148 3.852 17 C 0.018 3.982 18 C -0.535 4.535 19 H 0.071 0.929 20 C 0.000 4.000 21 N -0.934 5.934 22 Si 0.966 3.034 23 H -0.254 1.254 24 H -0.284 1.284 25 H -0.280 1.280 26 H 0.076 0.924 27 H 0.082 0.918 28 H 0.110 0.890 29 H 0.165 0.835 30 H 0.165 0.835 31 H 0.080 0.920 32 H 0.065 0.935 33 H 0.072 0.928 34 H 0.048 0.952 35 H 0.046 0.954 36 H 0.072 0.928 37 H 0.065 0.935 38 H 0.148 0.852 39 H 0.419 0.581 40 H 0.065 0.935 41 H 0.065 0.935 42 H -0.004 1.004 43 H 0.004 0.996 44 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.315 22.213 -10.452 24.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.241 6.241 3 C 0.155 3.845 4 C -0.242 4.242 5 C -0.033 4.033 6 C -0.138 4.138 7 C -0.073 4.073 8 C -0.200 4.200 9 C -0.201 4.201 10 C -0.021 4.021 11 C -0.809 4.809 12 S 2.804 3.196 13 O -0.981 6.981 14 O -0.976 6.976 15 N -0.874 5.874 16 C 0.023 3.977 17 C -0.021 4.021 18 C -0.573 4.573 19 H 0.090 0.910 20 C -0.198 4.198 21 N -0.574 5.574 22 Si 0.791 3.209 23 H -0.178 1.178 24 H -0.210 1.210 25 H -0.206 1.206 26 H 0.095 0.905 27 H 0.101 0.899 28 H 0.128 0.872 29 H 0.183 0.817 30 H 0.183 0.817 31 H 0.098 0.902 32 H 0.084 0.916 33 H 0.091 0.909 34 H 0.068 0.932 35 H 0.065 0.935 36 H 0.091 0.909 37 H 0.084 0.916 38 H 0.166 0.834 39 H 0.254 0.746 40 H 0.083 0.917 41 H 0.083 0.917 42 H 0.015 0.985 43 H 0.023 0.977 44 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -2.806 21.620 -11.127 24.476 hybrid contribution -0.710 -0.514 1.064 1.379 sum -3.516 21.106 -10.062 23.645 Atomic orbital electron populations 1.23492 0.75280 1.06022 1.03233 1.86287 1.24841 1.26310 1.86668 1.18653 0.90513 0.86197 0.89114 1.21668 1.01793 0.91422 1.09333 1.21454 0.93992 0.97959 0.89918 1.20176 0.94268 0.95276 1.04043 1.20152 0.99815 0.90159 0.97134 1.21873 1.02291 0.99984 0.95889 1.21878 1.02269 1.00004 0.95980 1.20877 1.00747 0.89734 0.90790 1.29836 1.04749 1.19104 1.27178 1.00906 0.72439 0.73621 0.72617 1.93500 1.33779 1.83836 1.86953 1.93529 1.80653 1.66912 1.56533 1.55357 1.20184 1.73188 1.38671 1.21291 0.80538 0.96899 0.98953 1.19219 0.96776 0.93507 0.92556 1.21554 0.94519 1.25450 1.15821 0.91043 1.25973 1.01186 0.96722 0.95951 1.70113 1.32295 1.33666 1.21309 0.85377 0.79440 0.77868 0.78223 1.17767 1.20967 1.20580 0.90526 0.89921 0.87190 0.81714 0.81725 0.90199 0.91558 0.90898 0.93238 0.93475 0.90879 0.91588 0.83432 0.74603 0.91680 0.91705 0.98514 0.97723 0.92836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.28 9.81 113.37 1.11 1.39 16 2 O -0.33 -10.03 5.56 -83.19 -0.46 -10.49 16 3 C 0.20 5.80 6.31 22.51 0.14 5.94 16 4 C -0.22 -4.59 9.04 22.36 0.20 -4.39 16 5 C -0.02 -0.27 8.70 22.25 0.19 -0.07 16 6 C -0.14 -2.72 4.78 -19.85 -0.09 -2.82 16 7 C -0.05 -0.78 3.09 -11.54 -0.04 -0.82 16 8 C -0.14 -1.61 9.01 71.98 0.65 -0.96 16 9 C -0.14 -1.74 9.01 71.98 0.65 -1.09 16 10 C 0.00 -0.06 9.17 22.25 0.20 0.15 16 11 C -0.72 -22.08 5.90 22.36 0.13 -21.95 16 12 S 2.71 98.23 5.46 -56.49 -0.31 97.92 16 13 O -0.99 -37.30 16.97 -128.00 -2.17 -39.47 16 14 O -0.99 -41.73 16.77 -122.92 -2.06 -43.79 16 15 N -1.11 -41.95 6.00 -187.49 -1.12 -43.07 16 16 C 0.15 6.28 4.44 86.37 0.38 6.66 16 17 C 0.02 0.94 5.11 29.85 0.15 1.10 16 18 C -0.53 -29.19 9.11 25.60 0.23 -28.96 16 19 H 0.07 3.62 7.74 -2.91 -0.02 3.60 16 20 C 0.00 -0.03 5.46 84.65 0.46 0.44 16 21 N -0.93 -55.78 13.29 21.45 0.28 -55.50 16 22 Si 0.97 42.69 29.54 68.60 2.03 44.72 16 23 H -0.25 -10.37 7.11 99.48 0.71 -9.67 16 24 H -0.28 -12.46 7.11 99.48 0.71 -11.76 16 25 H -0.28 -12.09 7.11 99.48 0.71 -11.39 16 26 H 0.08 1.36 7.66 -2.39 -0.02 1.34 16 27 H 0.08 1.27 7.66 -2.39 -0.02 1.25 16 28 H 0.11 2.31 8.14 -2.38 -0.02 2.29 16 29 H 0.17 2.34 6.30 -2.91 -0.02 2.32 16 30 H 0.17 1.64 7.09 -2.91 -0.02 1.62 16 31 H 0.08 1.17 7.87 -2.39 -0.02 1.15 16 32 H 0.07 0.61 7.39 -2.39 -0.02 0.59 16 33 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 34 H 0.05 0.64 8.14 -2.38 -0.02 0.62 16 35 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 36 H 0.07 0.69 8.14 -2.38 -0.02 0.67 16 37 H 0.07 0.66 7.38 -2.39 -0.02 0.65 16 38 H 0.15 3.60 7.22 -2.91 -0.02 3.58 16 39 H 0.42 14.74 8.65 -96.75 -0.84 13.90 16 40 H 0.07 2.56 6.65 -2.38 -0.02 2.55 16 41 H 0.06 2.83 7.13 -2.39 -0.02 2.82 16 42 H 0.00 -0.20 8.14 -2.39 -0.02 -0.22 16 43 H 0.00 0.24 8.14 -2.38 -0.02 0.22 16 44 H 0.26 14.76 8.31 -92.71 -0.77 13.99 16 Total: -1.00 -74.40 367.91 0.74 -73.66 By element: Atomic # 1 Polarization: 21.23 SS G_CDS: 0.17 Total: 21.41 kcal Atomic # 6 Polarization: -49.77 SS G_CDS: 4.38 Total: -45.38 kcal Atomic # 7 Polarization: -97.73 SS G_CDS: -0.84 Total: -98.56 kcal Atomic # 8 Polarization: -89.06 SS G_CDS: -4.70 Total: -93.76 kcal Atomic # 14 Polarization: 42.69 SS G_CDS: 2.03 Total: 44.72 kcal Atomic # 16 Polarization: 98.23 SS G_CDS: -0.31 Total: 97.92 kcal Total: -74.40 0.74 -73.66 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001191713488.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.186 kcal (2) G-P(sol) polarization free energy of solvation -74.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.662 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds