Wall clock time and date at job start Tue Mar 31 2020 14:24:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.35949 * 120.57098 * 2 1 4 4 C 1.40858 * 119.35063 * 179.97438 * 3 2 1 5 5 O 1.21850 * 119.74755 * 179.97438 * 4 3 2 6 6 O 1.34375 * 120.49949 * 0.02885 * 4 3 2 7 7 C 1.33739 * 121.20876 * 359.96834 * 6 4 3 8 8 C 1.50702 * 119.69440 * 179.97438 * 7 6 4 9 9 C 1.37677 * 120.60556 * 359.74368 * 7 6 4 10 10 C 1.47425 * 120.26446 * 180.27984 * 9 7 6 11 11 O 1.21627 * 120.00267 * 271.04856 * 10 9 7 12 12 N 1.34779 * 119.99997 * 91.04205 * 10 9 7 13 13 C 1.36940 * 119.99633 * 5.04756 * 12 10 9 14 14 H 1.07999 * 120.00250 * 322.20867 * 13 12 10 15 15 C 1.38995 * 119.99424 * 142.21463 * 13 12 10 16 16 N 1.31394 * 120.00327 * 339.61163 * 15 13 12 17 17 Si 1.86801 * 119.99949 * 159.61575 * 15 13 12 18 18 H 1.48503 * 109.46832 * 359.97438 * 17 15 13 19 19 H 1.48497 * 109.47551 * 119.99594 * 17 15 13 20 20 H 1.48501 * 109.47432 * 240.00185 * 17 15 13 21 21 C 1.46498 * 119.99998 * 185.04891 * 12 10 9 22 22 C 1.50703 * 109.46927 * 90.00362 * 21 12 10 23 23 C 1.38242 * 119.99672 * 269.72253 * 22 21 12 24 24 C 1.38228 * 119.99864 * 179.76781 * 23 22 21 25 25 C 1.38236 * 119.99901 * 0.51263 * 24 23 22 26 26 C 1.38233 * 120.00032 * 359.74175 * 25 24 23 27 27 C 1.38231 * 120.00347 * 0.02562 * 26 25 24 28 28 H 1.09002 * 109.47369 * 89.99875 * 1 2 3 29 29 H 1.09007 * 109.47055 * 330.00452 * 1 2 3 30 30 H 1.09000 * 109.47796 * 209.99887 * 1 2 3 31 31 H 1.07995 * 120.32173 * 359.95746 * 3 2 1 32 32 H 1.09003 * 109.47087 * 0.02562 * 8 7 6 33 33 H 1.08999 * 109.46369 * 120.00491 * 8 7 6 34 34 H 1.08998 * 109.47374 * 240.00348 * 8 7 6 35 35 H 0.97003 * 120.00442 * 185.07723 * 16 15 13 36 36 H 1.08995 * 109.46878 * 209.99872 * 21 12 10 37 37 H 1.08992 * 109.47041 * 330.00046 * 21 12 10 38 38 H 1.08003 * 119.99720 * 0.02562 * 23 22 21 39 39 H 1.07998 * 120.00404 * 180.22656 * 24 23 22 40 40 H 1.08005 * 119.99770 * 179.72573 * 25 24 23 41 41 H 1.08010 * 119.99913 * 179.97438 * 26 25 24 42 42 H 1.07995 * 120.00540 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1705 0.0000 4 6 3.6067 1.1405 0.0005 5 8 4.2336 2.1853 0.0001 6 8 4.2638 -0.0316 0.0005 7 6 3.6050 -1.1954 0.0005 8 6 4.3765 -2.4900 -0.0001 9 6 2.2285 -1.2217 0.0060 10 6 1.5100 -2.5090 0.0122 11 8 1.2263 -3.0522 -1.0384 12 7 1.1675 -3.0839 1.1821 13 6 1.3940 -2.4250 2.3610 14 1 2.2902 -1.8355 2.4866 15 6 0.4705 -2.5149 3.3959 16 7 -0.7683 -2.8717 3.1418 17 14 0.9905 -2.1285 5.1479 18 1 2.4277 -1.7548 5.1667 19 1 0.1782 -0.9993 5.6678 20 1 0.7795 -3.3246 6.0023 21 6 0.5530 -4.4138 1.1925 22 6 1.6301 -5.4641 1.2810 23 6 2.1814 -5.9877 0.1265 24 6 3.1727 -6.9476 0.2077 25 6 3.6053 -7.3917 1.4432 26 6 3.0503 -6.8719 2.5976 27 6 2.0623 -5.9085 2.5166 28 1 -0.3634 0.0000 -1.0277 29 1 -0.3633 0.8901 0.5138 30 1 -0.3635 -0.8900 0.5138 31 1 1.6731 2.1141 -0.0007 32 1 5.4454 -2.2760 -0.0001 33 1 4.1214 -3.0653 0.8898 34 1 4.1208 -3.0649 -0.8901 35 1 -1.4305 -2.8635 3.8506 36 1 -0.1106 -4.5006 2.0528 37 1 -0.0195 -4.5566 0.2761 38 1 1.8404 -5.6437 -0.8389 39 1 3.6060 -7.3541 -0.6942 40 1 4.3767 -8.1450 1.5065 41 1 3.3880 -7.2192 3.5630 42 1 1.6284 -5.5027 3.4184 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192518786.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:24:43 Heat of formation + Delta-G solvation = -51.171595 kcal Electronic energy + Delta-G solvation = -28687.870257 eV Core-core repulsion = 24791.983814 eV Total energy + Delta-G solvation = -3895.886443 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.130 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.61598 -39.33193 -38.28101 -37.34713 -35.46633 -35.00179 -32.36264 -32.07830 -30.82316 -30.41996 -28.37685 -27.63273 -25.98388 -24.85630 -23.58410 -22.05117 -21.56578 -21.09392 -19.81298 -18.24675 -17.80420 -16.78351 -16.43836 -16.23677 -15.85458 -15.18280 -14.98321 -14.69482 -14.47673 -14.14418 -13.79454 -13.62221 -13.37733 -13.30261 -13.03051 -12.94668 -12.84444 -12.58376 -12.24030 -12.12343 -11.99674 -11.89008 -11.61192 -11.44592 -11.33303 -11.10013 -10.96282 -10.57836 -10.51049 -10.35653 -9.91245 -9.89069 -9.43841 -8.91932 -8.46978 -8.25765 -7.90494 -7.75464 -6.62560 -4.31260 0.84577 1.77096 1.85896 1.90444 2.65964 2.94540 3.09564 3.12981 3.48491 3.58764 3.90495 4.18241 4.50935 4.62615 4.71734 4.82572 5.17027 5.31301 5.34538 5.40490 5.45590 5.55653 5.64454 5.67110 5.71769 5.92845 5.96194 5.98053 6.03004 6.08598 6.10721 6.25056 6.37522 6.46683 6.55094 6.59800 6.71998 6.90785 6.91904 6.98679 7.24550 7.29007 7.47482 7.50223 7.64044 7.85276 8.11470 8.80958 9.16787 9.60429 10.39451 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.010643 B = 0.005859 C = 0.004748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2630.150251 B = 4777.583630 C = 5895.850669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.082 3.918 3 C -0.301 4.301 4 C 0.499 3.501 5 O -0.498 6.498 6 O -0.261 6.261 7 C 0.153 3.847 8 C -0.108 4.108 9 C -0.197 4.197 10 C 0.528 3.472 11 O -0.589 6.589 12 N -0.415 5.415 13 C -0.340 4.340 14 H 0.087 0.913 15 C 0.054 3.946 16 N -0.854 5.854 17 Si 0.906 3.094 18 H -0.266 1.266 19 H -0.279 1.279 20 H -0.276 1.276 21 C 0.142 3.858 22 C -0.080 4.080 23 C -0.107 4.107 24 C -0.131 4.131 25 C -0.132 4.132 26 C -0.131 4.131 27 C -0.095 4.095 28 H 0.081 0.919 29 H 0.074 0.926 30 H 0.098 0.902 31 H 0.155 0.845 32 H 0.083 0.917 33 H 0.103 0.897 34 H 0.099 0.901 35 H 0.274 0.726 36 H 0.118 0.882 37 H 0.069 0.931 38 H 0.124 0.876 39 H 0.113 0.887 40 H 0.111 0.889 41 H 0.113 0.887 42 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.281 -4.464 -1.415 5.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.081 3.919 3 C -0.321 4.321 4 C 0.354 3.646 5 O -0.391 6.391 6 O -0.170 6.170 7 C 0.104 3.896 8 C -0.164 4.164 9 C -0.201 4.201 10 C 0.316 3.684 11 O -0.474 6.474 12 N -0.131 5.131 13 C -0.468 4.468 14 H 0.105 0.895 15 C -0.153 4.153 16 N -0.489 5.489 17 Si 0.732 3.268 18 H -0.190 1.190 19 H -0.204 1.204 20 H -0.201 1.201 21 C 0.020 3.980 22 C -0.081 4.081 23 C -0.125 4.125 24 C -0.149 4.149 25 C -0.150 4.150 26 C -0.149 4.149 27 C -0.113 4.113 28 H 0.100 0.900 29 H 0.093 0.907 30 H 0.117 0.883 31 H 0.173 0.827 32 H 0.102 0.898 33 H 0.122 0.878 34 H 0.117 0.883 35 H 0.084 0.916 36 H 0.135 0.865 37 H 0.087 0.913 38 H 0.142 0.858 39 H 0.131 0.869 40 H 0.129 0.871 41 H 0.131 0.869 42 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 3.437 -4.331 -1.777 5.807 hybrid contribution 0.059 0.401 1.144 1.214 sum 3.496 -3.930 -0.633 5.298 Atomic orbital electron populations 1.21033 0.89257 1.05211 1.02965 1.20352 0.97638 0.90687 0.83236 1.22100 0.92623 1.00059 1.17309 1.19208 0.88432 0.80698 0.76305 1.90935 1.71159 1.26041 1.50920 1.83306 1.44816 1.14707 1.74171 1.22689 0.90732 0.84851 0.91330 1.20978 1.00113 0.89867 1.05484 1.19894 0.92102 0.96403 1.11682 1.17553 0.83071 0.83379 0.84441 1.90662 1.59557 1.65340 1.31883 1.43325 1.52642 1.12644 1.04498 1.19337 1.06283 1.31032 0.90155 0.89520 1.25294 0.94103 0.95830 1.00119 1.69799 1.01074 1.44055 1.34010 0.86188 0.79596 0.78525 0.82541 1.18998 1.20432 1.20144 1.20513 0.92835 0.79916 1.04776 1.20564 0.98322 0.96544 0.92672 1.21266 0.96243 0.96239 0.98771 1.21054 0.98221 0.98476 0.97174 1.20994 1.00496 1.00674 0.92865 1.21074 0.97796 0.98126 0.97897 1.21125 0.96518 0.95897 0.97802 0.90046 0.90675 0.88321 0.82710 0.89827 0.87844 0.88268 0.91563 0.86455 0.91282 0.85836 0.86909 0.87061 0.86881 0.86154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.16 9.68 36.00 0.35 -1.81 16 2 C 0.08 1.50 5.93 -104.05 -0.62 0.88 16 3 C -0.30 -5.26 9.64 -39.41 -0.38 -5.64 16 4 C 0.50 9.63 7.93 31.72 0.25 9.88 16 5 O -0.50 -10.64 17.93 -19.60 -0.35 -11.00 16 6 O -0.26 -4.84 9.80 -17.65 -0.17 -5.01 16 7 C 0.15 2.74 7.03 -34.51 -0.24 2.49 16 8 C -0.11 -1.62 9.20 36.01 0.33 -1.29 16 9 C -0.20 -3.83 4.04 -104.96 -0.42 -4.25 16 10 C 0.53 11.17 4.63 -12.52 -0.06 11.11 16 11 O -0.59 -13.53 16.45 5.25 0.09 -13.44 16 12 N -0.41 -8.85 2.50 -117.32 -0.29 -9.15 16 13 C -0.34 -7.51 8.67 -14.99 -0.13 -7.64 16 14 H 0.09 1.96 7.32 -52.49 -0.38 1.58 16 15 C 0.05 1.19 4.98 -17.46 -0.09 1.10 16 16 N -0.85 -19.51 11.41 55.50 0.63 -18.88 16 17 Si 0.91 17.85 29.60 -169.99 -5.03 12.82 16 18 H -0.27 -5.30 7.11 56.52 0.40 -4.90 16 19 H -0.28 -5.60 7.11 56.52 0.40 -5.20 16 20 H -0.28 -5.40 7.11 56.52 0.40 -5.00 16 21 C 0.14 2.94 5.17 -5.19 -0.03 2.91 16 22 C -0.08 -1.46 5.46 -104.62 -0.57 -2.03 16 23 C -0.11 -1.80 9.70 -39.58 -0.38 -2.19 16 24 C -0.13 -1.90 10.05 -39.59 -0.40 -2.30 16 25 C -0.13 -1.81 10.05 -39.58 -0.40 -2.21 16 26 C -0.13 -1.93 10.05 -39.59 -0.40 -2.33 16 27 C -0.09 -1.63 9.70 -39.58 -0.38 -2.01 16 28 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 29 H 0.07 1.09 8.09 -51.93 -0.42 0.67 16 30 H 0.10 1.97 7.17 -51.93 -0.37 1.59 16 31 H 0.16 2.35 8.06 -52.49 -0.42 1.92 16 32 H 0.08 1.03 8.13 -51.93 -0.42 0.61 16 33 H 0.10 1.64 8.12 -51.93 -0.42 1.22 16 34 H 0.10 1.46 8.13 -51.93 -0.42 1.04 16 35 H 0.27 5.98 8.32 -40.82 -0.34 5.64 16 36 H 0.12 2.58 5.44 -51.93 -0.28 2.30 16 37 H 0.07 1.48 7.30 -51.93 -0.38 1.10 16 38 H 0.12 2.17 7.85 -52.48 -0.41 1.76 16 39 H 0.11 1.37 8.06 -52.49 -0.42 0.94 16 40 H 0.11 1.24 8.06 -52.48 -0.42 0.81 16 41 H 0.11 1.41 8.06 -52.48 -0.42 0.99 16 42 H 0.12 2.14 8.06 -52.49 -0.42 1.71 16 LS Contribution 365.21 15.07 5.50 5.50 Total: -1.00 -26.49 365.21 -8.38 -34.87 By element: Atomic # 1 Polarization: 14.79 SS G_CDS: -5.19 Total: 9.60 kcal Atomic # 6 Polarization: -1.75 SS G_CDS: -3.57 Total: -5.32 kcal Atomic # 7 Polarization: -28.36 SS G_CDS: 0.34 Total: -28.02 kcal Atomic # 8 Polarization: -29.01 SS G_CDS: -0.44 Total: -29.45 kcal Atomic # 14 Polarization: 17.85 SS G_CDS: -5.03 Total: 12.82 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -26.49 -8.38 -34.87 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192518786.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.304 kcal (2) G-P(sol) polarization free energy of solvation -26.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.868 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds