Wall clock time and date at job start Tue Mar 31 2020 14:24:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.35949 * 120.57098 * 2 1 4 4 C 1.40858 * 119.35063 * 179.97438 * 3 2 1 5 5 O 1.21850 * 119.74755 * 179.97438 * 4 3 2 6 6 O 1.34375 * 120.49949 * 0.02885 * 4 3 2 7 7 C 1.33739 * 121.20876 * 359.96834 * 6 4 3 8 8 C 1.50702 * 119.69440 * 179.97438 * 7 6 4 9 9 C 1.37677 * 120.60556 * 359.74368 * 7 6 4 10 10 C 1.47425 * 120.26446 * 180.27984 * 9 7 6 11 11 O 1.21627 * 120.00267 * 271.04856 * 10 9 7 12 12 N 1.34779 * 119.99997 * 91.04205 * 10 9 7 13 13 C 1.36940 * 119.99633 * 5.04756 * 12 10 9 14 14 H 1.07999 * 120.00250 * 322.20867 * 13 12 10 15 15 C 1.38995 * 119.99424 * 142.21463 * 13 12 10 16 16 N 1.31394 * 120.00327 * 339.61163 * 15 13 12 17 17 Si 1.86801 * 119.99949 * 159.61575 * 15 13 12 18 18 H 1.48503 * 109.46832 * 359.97438 * 17 15 13 19 19 H 1.48497 * 109.47551 * 119.99594 * 17 15 13 20 20 H 1.48501 * 109.47432 * 240.00185 * 17 15 13 21 21 C 1.46498 * 119.99998 * 185.04891 * 12 10 9 22 22 C 1.50703 * 109.46927 * 90.00362 * 21 12 10 23 23 C 1.38242 * 119.99672 * 269.72253 * 22 21 12 24 24 C 1.38228 * 119.99864 * 179.76781 * 23 22 21 25 25 C 1.38236 * 119.99901 * 0.51263 * 24 23 22 26 26 C 1.38233 * 120.00032 * 359.74175 * 25 24 23 27 27 C 1.38231 * 120.00347 * 0.02562 * 26 25 24 28 28 H 1.09002 * 109.47369 * 89.99875 * 1 2 3 29 29 H 1.09007 * 109.47055 * 330.00452 * 1 2 3 30 30 H 1.09000 * 109.47796 * 209.99887 * 1 2 3 31 31 H 1.07995 * 120.32173 * 359.95746 * 3 2 1 32 32 H 1.09003 * 109.47087 * 0.02562 * 8 7 6 33 33 H 1.08999 * 109.46369 * 120.00491 * 8 7 6 34 34 H 1.08998 * 109.47374 * 240.00348 * 8 7 6 35 35 H 0.97003 * 120.00442 * 185.07723 * 16 15 13 36 36 H 1.08995 * 109.46878 * 209.99872 * 21 12 10 37 37 H 1.08992 * 109.47041 * 330.00046 * 21 12 10 38 38 H 1.08003 * 119.99720 * 0.02562 * 23 22 21 39 39 H 1.07998 * 120.00404 * 180.22656 * 24 23 22 40 40 H 1.08005 * 119.99770 * 179.72573 * 25 24 23 41 41 H 1.08010 * 119.99913 * 179.97438 * 26 25 24 42 42 H 1.07995 * 120.00540 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1705 0.0000 4 6 3.6067 1.1405 0.0005 5 8 4.2336 2.1853 0.0001 6 8 4.2638 -0.0316 0.0005 7 6 3.6050 -1.1954 0.0005 8 6 4.3765 -2.4900 -0.0001 9 6 2.2285 -1.2217 0.0060 10 6 1.5100 -2.5090 0.0122 11 8 1.2263 -3.0522 -1.0384 12 7 1.1675 -3.0839 1.1821 13 6 1.3940 -2.4250 2.3610 14 1 2.2902 -1.8355 2.4866 15 6 0.4705 -2.5149 3.3959 16 7 -0.7683 -2.8717 3.1418 17 14 0.9905 -2.1285 5.1479 18 1 2.4277 -1.7548 5.1667 19 1 0.1782 -0.9993 5.6678 20 1 0.7795 -3.3246 6.0023 21 6 0.5530 -4.4138 1.1925 22 6 1.6301 -5.4641 1.2810 23 6 2.1814 -5.9877 0.1265 24 6 3.1727 -6.9476 0.2077 25 6 3.6053 -7.3917 1.4432 26 6 3.0503 -6.8719 2.5976 27 6 2.0623 -5.9085 2.5166 28 1 -0.3634 0.0000 -1.0277 29 1 -0.3633 0.8901 0.5138 30 1 -0.3635 -0.8900 0.5138 31 1 1.6731 2.1141 -0.0007 32 1 5.4454 -2.2760 -0.0001 33 1 4.1214 -3.0653 0.8898 34 1 4.1208 -3.0649 -0.8901 35 1 -1.4305 -2.8635 3.8506 36 1 -0.1106 -4.5006 2.0528 37 1 -0.0195 -4.5566 0.2761 38 1 1.8404 -5.6437 -0.8389 39 1 3.6060 -7.3541 -0.6942 40 1 4.3767 -8.1450 1.5065 41 1 3.3880 -7.2192 3.5630 42 1 1.6284 -5.5027 3.4184 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192518786.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:24:42 Heat of formation + Delta-G solvation = -61.320242 kcal Electronic energy + Delta-G solvation = -28688.310335 eV Core-core repulsion = 24791.983814 eV Total energy + Delta-G solvation = -3896.326522 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.130 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.11265 -40.87231 -39.65127 -38.90550 -36.95267 -36.66480 -33.78026 -33.70865 -32.25398 -31.64736 -29.79054 -29.02315 -27.55714 -26.47105 -25.07540 -23.28880 -22.99015 -22.44990 -21.40532 -19.86472 -19.26312 -18.30971 -17.92614 -17.70718 -17.30918 -16.77456 -16.63967 -16.03950 -15.89304 -15.59101 -15.25259 -15.05398 -14.83437 -14.73072 -14.38523 -14.26207 -14.15998 -13.99725 -13.57675 -13.55445 -13.42418 -13.32165 -13.15810 -13.07840 -12.79409 -12.62849 -12.51260 -12.11852 -11.89118 -11.71584 -11.43807 -11.34633 -11.12714 -10.60642 -9.69874 -9.54996 -9.51236 -9.32217 -8.33861 -6.06859 -0.58812 0.35029 0.55598 0.62522 1.18266 1.35346 1.47065 1.54924 1.85061 2.10897 2.28309 2.76611 3.00019 3.10729 3.22523 3.39118 3.75099 4.04989 4.09573 4.16066 4.17333 4.28538 4.31336 4.41886 4.43346 4.51716 4.63078 4.63678 4.70636 4.78041 4.79095 4.90896 4.96769 5.16180 5.19568 5.25817 5.28816 5.33398 5.49491 5.70505 5.70906 5.88454 5.99901 6.01640 6.25247 6.34026 6.38027 7.08183 7.48303 7.91782 8.68571 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.010643 B = 0.005859 C = 0.004748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2630.150251 B = 4777.583630 C = 5895.850669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.075 3.925 3 C -0.292 4.292 4 C 0.494 3.506 5 O -0.522 6.522 6 O -0.260 6.260 7 C 0.162 3.838 8 C -0.104 4.104 9 C -0.223 4.223 10 C 0.531 3.469 11 O -0.615 6.615 12 N -0.416 5.416 13 C -0.342 4.342 14 H 0.081 0.919 15 C 0.027 3.973 16 N -0.877 5.877 17 Si 0.956 3.044 18 H -0.266 1.266 19 H -0.282 1.282 20 H -0.272 1.272 21 C 0.149 3.851 22 C -0.099 4.099 23 C -0.119 4.119 24 C -0.125 4.125 25 C -0.121 4.121 26 C -0.127 4.127 27 C -0.110 4.110 28 H 0.096 0.904 29 H 0.099 0.901 30 H 0.063 0.937 31 H 0.180 0.820 32 H 0.114 0.886 33 H 0.095 0.905 34 H 0.103 0.897 35 H 0.275 0.725 36 H 0.100 0.900 37 H 0.048 0.952 38 H 0.108 0.892 39 H 0.142 0.858 40 H 0.150 0.850 41 H 0.140 0.860 42 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.133 -5.307 -0.906 7.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.073 3.927 3 C -0.311 4.311 4 C 0.350 3.650 5 O -0.417 6.417 6 O -0.168 6.168 7 C 0.113 3.887 8 C -0.160 4.160 9 C -0.227 4.227 10 C 0.319 3.681 11 O -0.502 6.502 12 N -0.132 5.132 13 C -0.470 4.470 14 H 0.099 0.901 15 C -0.179 4.179 16 N -0.513 5.513 17 Si 0.781 3.219 18 H -0.191 1.191 19 H -0.207 1.207 20 H -0.197 1.197 21 C 0.026 3.974 22 C -0.100 4.100 23 C -0.137 4.137 24 C -0.143 4.143 25 C -0.139 4.139 26 C -0.145 4.145 27 C -0.129 4.129 28 H 0.114 0.886 29 H 0.118 0.882 30 H 0.082 0.918 31 H 0.197 0.803 32 H 0.132 0.868 33 H 0.114 0.886 34 H 0.121 0.879 35 H 0.085 0.915 36 H 0.118 0.882 37 H 0.066 0.934 38 H 0.126 0.874 39 H 0.159 0.841 40 H 0.168 0.832 41 H 0.158 0.842 42 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 5.286 -5.189 -1.261 7.514 hybrid contribution -0.503 0.579 0.948 1.220 sum 4.784 -4.610 -0.312 6.651 Atomic orbital electron populations 1.20988 0.88440 1.04619 1.03735 1.20510 0.98319 0.90518 0.83318 1.22217 0.91673 1.00723 1.16507 1.19474 0.88995 0.80534 0.75987 1.90922 1.71673 1.26867 1.52264 1.83304 1.44882 1.14800 1.73844 1.23089 0.90594 0.85407 0.89609 1.21053 1.01659 0.88155 1.05126 1.19935 0.92997 0.96106 1.13632 1.17710 0.82764 0.83673 0.83927 1.90632 1.60727 1.66228 1.32620 1.43408 1.52324 1.12940 1.04501 1.19325 1.06011 1.31199 0.90477 0.90108 1.25804 0.93936 0.95718 1.02402 1.69878 1.01770 1.44887 1.34766 0.85431 0.78957 0.78175 0.79366 1.19050 1.20745 1.19724 1.20329 0.93595 0.80772 1.02699 1.20341 0.98716 0.96981 0.93969 1.21189 0.97532 0.97531 0.97490 1.21362 0.96848 0.97085 0.98971 1.21418 1.00299 1.00363 0.91803 1.21380 0.96471 0.96815 0.99803 1.21086 0.97891 0.97303 0.96643 0.88595 0.88188 0.91808 0.80254 0.86769 0.88619 0.87914 0.91472 0.88228 0.93354 0.87401 0.84064 0.83227 0.84186 0.87580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.06 9.68 71.23 0.69 -3.37 16 2 C 0.07 2.70 5.93 -19.49 -0.12 2.58 16 3 C -0.29 -9.82 9.64 22.38 0.22 -9.60 16 4 C 0.49 18.57 7.93 68.46 0.54 19.11 16 5 O -0.52 -21.87 17.93 18.74 0.34 -21.53 16 6 O -0.26 -9.36 9.80 25.70 0.25 -9.11 16 7 C 0.16 5.69 7.03 25.55 0.18 5.87 16 8 C -0.10 -2.99 9.20 71.24 0.66 -2.34 16 9 C -0.22 -8.71 4.04 -20.09 -0.08 -8.79 16 10 C 0.53 23.07 4.63 86.66 0.40 23.47 16 11 O -0.61 -29.25 16.45 -4.12 -0.07 -29.32 16 12 N -0.42 -18.37 2.50 -643.33 -1.61 -19.98 16 13 C -0.34 -15.41 8.67 84.08 0.73 -14.69 16 14 H 0.08 3.70 7.32 -2.91 -0.02 3.67 16 15 C 0.03 1.20 4.98 84.94 0.42 1.62 16 16 N -0.88 -41.21 11.41 21.67 0.25 -40.96 16 17 Si 0.96 36.61 29.60 68.60 2.03 38.64 16 18 H -0.27 -10.15 7.11 99.48 0.71 -9.44 16 19 H -0.28 -10.88 7.11 99.48 0.71 -10.17 16 20 H -0.27 -10.18 7.11 99.48 0.71 -9.48 16 21 C 0.15 6.47 5.17 85.63 0.44 6.91 16 22 C -0.10 -3.70 5.46 -19.86 -0.11 -3.81 16 23 C -0.12 -4.00 9.70 22.27 0.22 -3.78 16 24 C -0.12 -3.29 10.05 22.27 0.22 -3.06 16 25 C -0.12 -2.86 10.05 22.27 0.22 -2.63 16 26 C -0.13 -3.40 10.05 22.27 0.22 -3.18 16 27 C -0.11 -3.77 9.70 22.27 0.22 -3.55 16 28 H 0.10 2.87 8.14 -2.39 -0.02 2.86 16 29 H 0.10 2.77 8.09 -2.38 -0.02 2.75 16 30 H 0.06 2.61 7.17 -2.39 -0.02 2.59 16 31 H 0.18 5.05 8.06 -2.91 -0.02 5.02 16 32 H 0.11 2.54 8.13 -2.39 -0.02 2.52 16 33 H 0.10 2.97 8.12 -2.39 -0.02 2.95 16 34 H 0.10 2.92 8.13 -2.39 -0.02 2.90 16 35 H 0.28 12.30 8.32 -92.71 -0.77 11.53 16 36 H 0.10 4.65 5.44 -2.39 -0.01 4.64 16 37 H 0.05 2.22 7.30 -2.39 -0.02 2.21 16 38 H 0.11 3.92 7.85 -2.91 -0.02 3.90 16 39 H 0.14 2.90 8.06 -2.91 -0.02 2.88 16 40 H 0.15 2.46 8.06 -2.91 -0.02 2.44 16 41 H 0.14 2.98 8.06 -2.91 -0.02 2.95 16 42 H 0.11 3.84 8.06 -2.91 -0.02 3.82 16 Total: -1.00 -58.27 365.21 7.31 -50.96 By element: Atomic # 1 Polarization: 29.49 SS G_CDS: 1.04 Total: 30.53 kcal Atomic # 6 Polarization: -4.31 SS G_CDS: 5.08 Total: 0.76 kcal Atomic # 7 Polarization: -59.58 SS G_CDS: -1.36 Total: -60.94 kcal Atomic # 8 Polarization: -60.47 SS G_CDS: 0.52 Total: -59.95 kcal Atomic # 14 Polarization: 36.61 SS G_CDS: 2.03 Total: 38.64 kcal Total: -58.27 7.31 -50.96 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192518786.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.358 kcal (2) G-P(sol) polarization free energy of solvation -58.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.963 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds