Wall clock time and date at job start Tue Mar 31 2020 14:41:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50702 * 109.46690 * 2 1 4 4 C 1.38294 * 119.94487 * 90.00261 * 3 2 1 5 5 C 1.38118 * 120.05691 * 179.97438 * 4 3 2 6 6 C 1.38752 * 119.94213 * 359.97438 * 5 4 3 7 7 O 1.35904 * 120.05320 * 179.97438 * 6 5 4 8 8 C 1.42902 * 116.99860 * 0.02742 * 7 6 5 9 9 C 1.38711 * 119.89029 * 0.02562 * 6 5 4 10 10 S 1.76204 * 120.02466 * 179.97438 * 9 6 5 11 11 O 1.42105 * 106.39972 * 181.45551 * 10 9 6 12 12 O 1.42098 * 106.40426 * 48.53723 * 10 9 6 13 13 N 1.65595 * 107.21987 * 294.99435 * 10 9 6 14 14 C 1.46498 * 119.99850 * 89.99964 * 13 10 9 15 15 C 1.53003 * 109.47161 * 95.00088 * 14 13 10 16 16 C 1.46498 * 120.00275 * 270.00253 * 13 10 9 17 17 C 1.50703 * 109.46907 * 94.99986 * 16 13 10 18 18 H 1.08001 * 120.00049 * 359.97438 * 17 16 13 19 19 C 1.37880 * 119.99988 * 180.02562 * 17 16 13 20 20 N 1.31508 * 120.00331 * 179.97438 * 19 17 16 21 21 Si 1.86803 * 119.99967 * 359.97438 * 19 17 16 22 22 H 1.48500 * 109.46986 * 89.99908 * 21 19 17 23 23 H 1.48493 * 109.47165 * 210.00277 * 21 19 17 24 24 H 1.48496 * 109.46962 * 330.00217 * 21 19 17 25 25 C 1.38160 * 119.94354 * 0.24196 * 9 6 5 26 26 H 1.09001 * 109.46879 * 60.00431 * 1 2 3 27 27 H 1.09005 * 109.46818 * 179.97438 * 1 2 3 28 28 H 1.08993 * 109.47471 * 300.00349 * 1 2 3 29 29 H 1.08993 * 109.47304 * 240.00179 * 2 1 3 30 30 H 1.09001 * 109.46879 * 119.99568 * 2 1 3 31 31 H 1.08006 * 119.96773 * 359.97233 * 4 3 2 32 32 H 1.08000 * 120.02669 * 179.97438 * 5 4 3 33 33 H 1.09001 * 109.47102 * 299.99713 * 8 7 6 34 34 H 1.09001 * 109.47097 * 60.00135 * 8 7 6 35 35 H 1.09007 * 109.46738 * 179.97438 * 8 7 6 36 36 H 1.08996 * 109.47764 * 215.00207 * 14 13 10 37 37 H 1.09003 * 109.47361 * 335.00581 * 14 13 10 38 38 H 1.09003 * 109.46581 * 60.00015 * 15 14 13 39 39 H 1.08994 * 109.47597 * 179.97438 * 15 14 13 40 40 H 1.09005 * 109.47081 * 300.00493 * 15 14 13 41 41 H 1.09001 * 109.47378 * 214.99601 * 16 13 10 42 42 H 1.09002 * 109.46925 * 335.00342 * 16 13 10 43 43 H 0.96995 * 120.00625 * 179.97438 * 20 19 17 44 44 H 1.07998 * 119.96919 * 179.74521 * 25 9 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2624 2.0717 1.1983 5 6 2.7232 3.3738 1.2010 6 6 2.9557 4.0286 0.0001 7 8 3.4086 5.3099 0.0001 8 6 3.6244 5.9217 1.2734 9 6 2.7241 3.3736 -1.2005 10 16 3.0176 4.2020 -2.7278 11 8 2.6578 3.2887 -3.7552 12 8 4.3084 4.7874 -2.6252 13 7 1.9410 5.4569 -2.8195 14 6 2.3026 6.7727 -2.2865 15 6 2.8563 7.6454 -3.4146 16 6 0.6270 5.2513 -3.4337 17 6 -0.3844 4.9350 -2.3622 18 1 -0.0788 4.8910 -1.3272 19 6 -1.6996 4.7006 -2.7032 20 7 -2.5821 4.4240 -1.7682 21 14 -2.2281 4.7759 -4.4933 22 1 -2.0886 3.4311 -5.1075 23 1 -3.6453 5.2120 -4.5731 24 1 -1.3703 5.7444 -5.2223 25 6 2.2579 2.0730 -1.1979 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 1.8934 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 2.0815 1.5613 2.1329 32 1 2.9023 3.8817 2.1371 33 1 2.6875 5.9423 1.8300 34 1 4.3657 5.3490 1.8307 35 1 3.9850 6.9404 1.1305 36 1 1.4189 7.2475 -1.8602 37 1 3.0610 6.6553 -1.5124 38 1 2.0979 7.7628 -4.1887 39 1 3.1249 8.6245 -3.0182 40 1 3.7401 7.1706 -3.8409 41 1 0.3266 6.1568 -3.9609 42 1 0.6812 4.4215 -4.1385 43 1 -3.5074 4.2595 -2.0080 44 1 2.0736 1.5641 -2.1324 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192793502.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:41:32 Heat of formation + Delta-G solvation = -89.520098 kcal Electronic energy + Delta-G solvation = -27839.309847 eV Core-core repulsion = 24077.204439 eV Total energy + Delta-G solvation = -3762.105408 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.09442 -37.81674 -36.49705 -36.05278 -35.16713 -33.42148 -32.57645 -31.15397 -30.14662 -28.93401 -27.15523 -27.04592 -23.54366 -23.07566 -22.71531 -21.40478 -20.97942 -18.46862 -17.89380 -17.01330 -16.94034 -16.29290 -16.21496 -15.63292 -15.35521 -14.55220 -14.40129 -14.22143 -14.05419 -13.94083 -13.36703 -13.26637 -13.01922 -12.68079 -12.58067 -12.37129 -12.09051 -11.91526 -11.85957 -11.84421 -11.63521 -11.39916 -11.32179 -11.03939 -10.95665 -10.92346 -10.82817 -10.76075 -10.40572 -10.30290 -10.11077 -10.03291 -9.54247 -9.08927 -8.59906 -8.07939 -7.92791 -6.10685 -4.10129 1.03584 1.29876 1.58913 3.23459 3.29273 3.35742 3.39369 3.56198 3.83631 4.38325 4.39785 4.75578 4.83695 5.01570 5.16886 5.17151 5.21098 5.24454 5.28806 5.47077 5.54691 5.56405 5.58716 5.71380 5.83267 5.85156 5.87760 5.93604 6.04205 6.13557 6.22438 6.28592 6.32254 6.38855 6.54026 6.65096 6.70260 6.71297 6.87822 6.91748 7.20341 7.35371 7.49022 7.60961 8.46989 8.94114 9.50245 11.01916 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.009297 B = 0.007395 C = 0.005275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3010.851175 B = 3785.615732 C = 5306.995073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.076 4.076 3 C -0.140 4.140 4 C -0.030 4.030 5 C -0.226 4.226 6 C 0.221 3.779 7 O -0.308 6.308 8 C 0.026 3.974 9 C -0.685 4.685 10 S 2.698 3.302 11 O -0.967 6.967 12 O -0.967 6.967 13 N -0.971 5.971 14 C 0.124 3.876 15 C -0.170 4.170 16 C 0.213 3.787 17 C -0.536 4.536 18 H 0.079 0.921 19 C 0.076 3.924 20 N -0.895 5.895 21 Si 0.867 3.133 22 H -0.272 1.272 23 H -0.285 1.285 24 H -0.263 1.263 25 C 0.026 3.974 26 H 0.065 0.935 27 H 0.053 0.947 28 H 0.055 0.945 29 H 0.071 0.929 30 H 0.067 0.933 31 H 0.126 0.874 32 H 0.131 0.869 33 H 0.060 0.940 34 H 0.056 0.944 35 H 0.104 0.896 36 H 0.078 0.922 37 H 0.084 0.916 38 H 0.056 0.944 39 H 0.059 0.941 40 H 0.056 0.944 41 H 0.039 0.961 42 H 0.043 0.957 43 H 0.264 0.736 44 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.412 -1.365 6.727 12.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.114 4.114 3 C -0.141 4.141 4 C -0.049 4.049 5 C -0.245 4.245 6 C 0.173 3.827 7 O -0.221 6.221 8 C -0.068 4.068 9 C -0.771 4.771 10 S 2.787 3.213 11 O -0.958 6.958 12 O -0.957 6.957 13 N -0.810 5.810 14 C -0.002 4.002 15 C -0.229 4.229 16 C 0.089 3.911 17 C -0.575 4.575 18 H 0.097 0.903 19 C -0.127 4.127 20 N -0.533 5.533 21 Si 0.693 3.307 22 H -0.197 1.197 23 H -0.211 1.211 24 H -0.187 1.187 25 C 0.007 3.993 26 H 0.084 0.916 27 H 0.072 0.928 28 H 0.074 0.926 29 H 0.090 0.910 30 H 0.086 0.914 31 H 0.144 0.856 32 H 0.149 0.851 33 H 0.079 0.921 34 H 0.075 0.925 35 H 0.122 0.878 36 H 0.097 0.903 37 H 0.102 0.898 38 H 0.075 0.925 39 H 0.078 0.922 40 H 0.075 0.925 41 H 0.057 0.943 42 H 0.061 0.939 43 H 0.074 0.926 44 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 10.868 -1.482 5.996 12.501 hybrid contribution -1.078 -0.065 0.288 1.118 sum 9.790 -1.547 6.285 11.737 Atomic orbital electron populations 1.21791 0.94370 1.01304 1.03300 1.20457 0.96529 0.91976 1.02414 1.19851 1.03857 0.97443 0.92947 1.20964 0.92901 0.93344 0.97658 1.21160 1.09474 0.97156 0.96742 1.18224 0.88564 0.82925 0.92985 1.86115 1.79637 1.23917 1.32402 1.23122 1.01228 0.98545 0.83943 1.30288 1.20649 1.07291 1.18870 1.01682 0.73079 0.72906 0.73637 1.93512 1.84159 1.64058 1.54056 1.93524 1.37752 1.77233 1.87174 1.57091 1.30228 1.20890 1.72763 1.21214 1.00566 0.82882 0.95562 1.22230 1.01286 0.99458 0.99962 1.19619 0.79254 0.97907 0.94307 1.21450 0.92506 1.48514 0.95061 0.90324 1.24832 0.96447 0.94340 0.97042 1.69893 1.03060 1.47715 1.32609 0.86988 0.78166 0.79455 0.86076 1.19708 1.21119 1.18724 1.20636 0.88674 0.91024 0.98968 0.91561 0.92762 0.92581 0.91022 0.91448 0.85605 0.85081 0.92117 0.92501 0.87792 0.90323 0.89759 0.92462 0.92229 0.92507 0.94300 0.93880 0.92647 0.83759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.10 9.89 37.16 0.37 -1.73 16 2 C -0.08 -0.99 6.06 -27.88 -0.17 -1.16 16 3 C -0.14 -2.23 5.13 -104.60 -0.54 -2.77 16 4 C -0.03 -0.44 9.69 -39.60 -0.38 -0.83 16 5 C -0.23 -3.40 9.04 -39.44 -0.36 -3.76 16 6 C 0.22 3.92 6.63 -39.22 -0.26 3.66 16 7 O -0.31 -5.01 6.48 -29.12 -0.19 -5.20 16 8 C 0.03 0.29 9.81 101.05 0.99 1.28 16 9 C -0.69 -13.55 5.92 -39.44 -0.23 -13.78 16 10 S 2.70 57.14 5.25 -107.50 -0.56 56.58 16 11 O -0.97 -22.31 15.52 -57.17 -0.89 -23.20 16 12 O -0.97 -20.63 16.27 -62.48 -1.02 -21.64 16 13 N -0.97 -20.64 2.77 -115.66 -0.32 -20.96 16 14 C 0.12 2.23 5.86 -4.04 -0.02 2.21 16 15 C -0.17 -2.68 10.24 37.16 0.38 -2.30 16 16 C 0.21 5.09 4.50 -5.19 -0.02 5.07 16 17 C -0.54 -14.58 9.94 -34.44 -0.34 -14.92 16 18 H 0.08 2.31 8.06 -52.49 -0.42 1.89 16 19 C 0.08 2.13 5.47 -17.82 -0.10 2.04 16 20 N -0.89 -26.38 13.96 55.43 0.77 -25.61 16 21 Si 0.87 21.00 27.47 -169.99 -4.67 16.33 16 22 H -0.27 -6.57 7.11 56.52 0.40 -6.16 16 23 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 24 H -0.26 -6.06 6.54 56.52 0.37 -5.69 16 25 C 0.03 0.49 9.20 -39.61 -0.36 0.12 16 26 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 27 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.07 0.86 8.09 -51.93 -0.42 0.44 16 30 H 0.07 0.71 8.08 -51.93 -0.42 0.29 16 31 H 0.13 1.41 8.06 -52.48 -0.42 0.99 16 32 H 0.13 1.53 6.30 -52.49 -0.33 1.20 16 33 H 0.06 0.62 7.66 -51.93 -0.40 0.22 16 34 H 0.06 0.52 7.66 -51.93 -0.40 0.12 16 35 H 0.10 0.89 8.14 -51.92 -0.42 0.46 16 36 H 0.08 1.42 8.11 -51.93 -0.42 1.00 16 37 H 0.08 1.43 4.85 -51.93 -0.25 1.18 16 38 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 39 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 41 H 0.04 0.90 7.17 -51.93 -0.37 0.53 16 42 H 0.04 1.06 6.34 -51.93 -0.33 0.74 16 43 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 44 H 0.14 2.62 7.33 -52.49 -0.38 2.23 16 LS Contribution 368.87 15.07 5.56 5.56 Total: -1.00 -33.40 368.87 -9.06 -42.46 By element: Atomic # 1 Polarization: 9.26 SS G_CDS: -6.70 Total: 2.56 kcal Atomic # 6 Polarization: -25.82 SS G_CDS: -1.05 Total: -26.87 kcal Atomic # 7 Polarization: -47.03 SS G_CDS: 0.45 Total: -46.58 kcal Atomic # 8 Polarization: -47.95 SS G_CDS: -2.09 Total: -50.04 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -4.67 Total: 16.33 kcal Atomic # 16 Polarization: 57.14 SS G_CDS: -0.56 Total: 56.58 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -33.40 -9.06 -42.46 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192793502.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.063 kcal (2) G-P(sol) polarization free energy of solvation -33.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.457 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds