Wall clock time and date at job start Tue Mar 31 2020 14:41:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50702 * 109.46690 * 2 1 4 4 C 1.38294 * 119.94487 * 90.00261 * 3 2 1 5 5 C 1.38118 * 120.05691 * 179.97438 * 4 3 2 6 6 C 1.38752 * 119.94213 * 359.97438 * 5 4 3 7 7 O 1.35904 * 120.05320 * 179.97438 * 6 5 4 8 8 C 1.42902 * 116.99860 * 0.02742 * 7 6 5 9 9 C 1.38711 * 119.89029 * 0.02562 * 6 5 4 10 10 S 1.76204 * 120.02466 * 179.97438 * 9 6 5 11 11 O 1.42105 * 106.39972 * 181.45551 * 10 9 6 12 12 O 1.42098 * 106.40426 * 48.53723 * 10 9 6 13 13 N 1.65595 * 107.21987 * 294.99435 * 10 9 6 14 14 C 1.46498 * 119.99850 * 89.99964 * 13 10 9 15 15 C 1.53003 * 109.47161 * 95.00088 * 14 13 10 16 16 C 1.46498 * 120.00275 * 270.00253 * 13 10 9 17 17 C 1.50703 * 109.46907 * 94.99986 * 16 13 10 18 18 H 1.08001 * 120.00049 * 359.97438 * 17 16 13 19 19 C 1.37880 * 119.99988 * 180.02562 * 17 16 13 20 20 N 1.31508 * 120.00331 * 179.97438 * 19 17 16 21 21 Si 1.86803 * 119.99967 * 359.97438 * 19 17 16 22 22 H 1.48500 * 109.46986 * 89.99908 * 21 19 17 23 23 H 1.48493 * 109.47165 * 210.00277 * 21 19 17 24 24 H 1.48496 * 109.46962 * 330.00217 * 21 19 17 25 25 C 1.38160 * 119.94354 * 0.24196 * 9 6 5 26 26 H 1.09001 * 109.46879 * 60.00431 * 1 2 3 27 27 H 1.09005 * 109.46818 * 179.97438 * 1 2 3 28 28 H 1.08993 * 109.47471 * 300.00349 * 1 2 3 29 29 H 1.08993 * 109.47304 * 240.00179 * 2 1 3 30 30 H 1.09001 * 109.46879 * 119.99568 * 2 1 3 31 31 H 1.08006 * 119.96773 * 359.97233 * 4 3 2 32 32 H 1.08000 * 120.02669 * 179.97438 * 5 4 3 33 33 H 1.09001 * 109.47102 * 299.99713 * 8 7 6 34 34 H 1.09001 * 109.47097 * 60.00135 * 8 7 6 35 35 H 1.09007 * 109.46738 * 179.97438 * 8 7 6 36 36 H 1.08996 * 109.47764 * 215.00207 * 14 13 10 37 37 H 1.09003 * 109.47361 * 335.00581 * 14 13 10 38 38 H 1.09003 * 109.46581 * 60.00015 * 15 14 13 39 39 H 1.08994 * 109.47597 * 179.97438 * 15 14 13 40 40 H 1.09005 * 109.47081 * 300.00493 * 15 14 13 41 41 H 1.09001 * 109.47378 * 214.99601 * 16 13 10 42 42 H 1.09002 * 109.46925 * 335.00342 * 16 13 10 43 43 H 0.96995 * 120.00625 * 179.97438 * 20 19 17 44 44 H 1.07998 * 119.96919 * 179.74521 * 25 9 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2624 2.0717 1.1983 5 6 2.7232 3.3738 1.2010 6 6 2.9557 4.0286 0.0001 7 8 3.4086 5.3099 0.0001 8 6 3.6244 5.9217 1.2734 9 6 2.7241 3.3736 -1.2005 10 16 3.0176 4.2020 -2.7278 11 8 2.6578 3.2887 -3.7552 12 8 4.3084 4.7874 -2.6252 13 7 1.9410 5.4569 -2.8195 14 6 2.3026 6.7727 -2.2865 15 6 2.8563 7.6454 -3.4146 16 6 0.6270 5.2513 -3.4337 17 6 -0.3844 4.9350 -2.3622 18 1 -0.0788 4.8910 -1.3272 19 6 -1.6996 4.7006 -2.7032 20 7 -2.5821 4.4240 -1.7682 21 14 -2.2281 4.7759 -4.4933 22 1 -2.0886 3.4311 -5.1075 23 1 -3.6453 5.2120 -4.5731 24 1 -1.3703 5.7444 -5.2223 25 6 2.2579 2.0730 -1.1979 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 1.8934 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 2.0815 1.5613 2.1329 32 1 2.9023 3.8817 2.1371 33 1 2.6875 5.9423 1.8300 34 1 4.3657 5.3490 1.8307 35 1 3.9850 6.9404 1.1305 36 1 1.4189 7.2475 -1.8602 37 1 3.0610 6.6553 -1.5124 38 1 2.0979 7.7628 -4.1887 39 1 3.1249 8.6245 -3.0182 40 1 3.7401 7.1706 -3.8409 41 1 0.3266 6.1568 -3.9609 42 1 0.6812 4.4215 -4.1385 43 1 -3.5074 4.2595 -2.0080 44 1 2.0736 1.5641 -2.1324 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192793502.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:41:32 Heat of formation + Delta-G solvation = -111.404019 kcal Electronic energy + Delta-G solvation = -27840.258805 eV Core-core repulsion = 24077.204439 eV Total energy + Delta-G solvation = -3763.054366 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.29196 -39.02949 -38.15586 -37.72592 -36.87461 -34.66172 -34.54689 -32.40308 -31.79044 -30.09223 -28.91441 -28.11826 -24.78270 -24.57351 -24.16292 -23.10343 -22.17537 -19.84875 -19.37873 -19.00074 -18.54687 -17.74169 -17.60964 -17.02853 -16.71532 -16.18908 -15.70985 -15.61176 -15.52839 -15.22828 -14.72531 -14.58654 -14.43716 -14.21833 -14.14619 -13.69314 -13.61870 -13.52858 -13.29412 -13.10416 -13.04080 -12.94792 -12.77549 -12.76057 -12.58588 -12.19905 -12.08147 -12.05941 -11.90378 -11.85341 -11.68703 -11.52140 -11.46858 -10.75786 -10.38803 -9.74090 -9.22222 -8.27081 -6.30523 -0.48841 -0.09864 0.32775 1.36281 1.39436 1.47237 2.00444 2.15893 2.35347 2.47501 2.79058 3.07198 3.36621 3.74885 3.80732 3.97352 4.03003 4.18073 4.28063 4.36797 4.40607 4.48168 4.49292 4.51444 4.55101 4.68042 4.71898 4.72955 4.76695 4.91509 4.97151 5.01003 5.04440 5.06503 5.12286 5.16493 5.39148 5.41973 5.46122 5.49311 5.51441 5.69921 5.84515 6.20523 6.33330 6.72503 7.32659 8.88306 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.009297 B = 0.007395 C = 0.005275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3010.851175 B = 3785.615732 C = 5306.995073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.074 4.074 3 C -0.147 4.147 4 C -0.026 4.026 5 C -0.225 4.225 6 C 0.207 3.793 7 O -0.329 6.329 8 C 0.012 3.988 9 C -0.714 4.714 10 S 2.701 3.299 11 O -0.997 6.997 12 O -0.974 6.974 13 N -0.977 5.977 14 C 0.115 3.885 15 C -0.167 4.167 16 C 0.220 3.780 17 C -0.531 4.531 18 H 0.045 0.955 19 C 0.024 3.976 20 N -0.936 5.936 21 Si 0.921 3.079 22 H -0.272 1.272 23 H -0.278 1.278 24 H -0.241 1.241 25 C -0.006 4.006 26 H 0.027 0.973 27 H 0.079 0.921 28 H 0.052 0.948 29 H 0.076 0.924 30 H 0.103 0.897 31 H 0.169 0.831 32 H 0.169 0.831 33 H 0.067 0.933 34 H 0.079 0.921 35 H 0.127 0.873 36 H 0.074 0.926 37 H 0.095 0.905 38 H 0.055 0.945 39 H 0.092 0.908 40 H 0.049 0.951 41 H 0.052 0.948 42 H 0.034 0.966 43 H 0.266 0.734 44 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.100 -1.060 8.089 13.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.111 4.111 3 C -0.148 4.148 4 C -0.044 4.044 5 C -0.244 4.244 6 C 0.159 3.841 7 O -0.242 6.242 8 C -0.082 4.082 9 C -0.803 4.803 10 S 2.794 3.206 11 O -0.988 6.988 12 O -0.964 6.964 13 N -0.815 5.815 14 C -0.009 4.009 15 C -0.226 4.226 16 C 0.096 3.904 17 C -0.571 4.571 18 H 0.063 0.937 19 C -0.175 4.175 20 N -0.575 5.575 21 Si 0.745 3.255 22 H -0.197 1.197 23 H -0.203 1.203 24 H -0.165 1.165 25 C -0.025 4.025 26 H 0.046 0.954 27 H 0.098 0.902 28 H 0.071 0.929 29 H 0.095 0.905 30 H 0.121 0.879 31 H 0.186 0.814 32 H 0.186 0.814 33 H 0.086 0.914 34 H 0.097 0.903 35 H 0.145 0.855 36 H 0.093 0.907 37 H 0.113 0.887 38 H 0.074 0.926 39 H 0.111 0.889 40 H 0.068 0.932 41 H 0.070 0.930 42 H 0.052 0.948 43 H 0.075 0.925 44 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 11.590 -1.133 7.332 13.762 hybrid contribution -1.234 -0.156 0.058 1.245 sum 10.356 -1.289 7.390 12.788 Atomic orbital electron populations 1.21769 0.95272 1.02323 1.01205 1.20536 0.95521 0.90574 1.04437 1.20248 1.03157 0.98865 0.92541 1.21521 0.90903 0.93242 0.98697 1.21650 1.08093 0.97456 0.97203 1.18453 0.88715 0.83774 0.93204 1.86071 1.79347 1.23306 1.35447 1.23544 1.02400 0.99769 0.82441 1.30021 1.23474 1.08107 1.18726 1.01275 0.72881 0.72576 0.73898 1.93459 1.84525 1.64807 1.56024 1.93494 1.37952 1.77445 1.87546 1.57064 1.28906 1.22364 1.73163 1.21464 1.00817 0.81832 0.96822 1.22215 1.00729 1.00521 0.99108 1.19381 0.79814 0.97976 0.93280 1.21560 0.93332 1.47797 0.94367 0.93691 1.25604 0.96547 0.94145 1.01238 1.70014 1.03511 1.49245 1.34778 0.86100 0.78385 0.79897 0.81148 1.19743 1.20317 1.16465 1.20759 0.90489 0.91317 0.99929 0.95390 0.90202 0.92865 0.90548 0.87877 0.81387 0.81360 0.91402 0.90284 0.85493 0.90714 0.88725 0.92605 0.88895 0.93204 0.92992 0.94774 0.92494 0.85063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.05 9.89 71.98 0.71 -3.34 16 2 C -0.07 -1.80 6.06 29.85 0.18 -1.62 16 3 C -0.15 -4.59 5.13 -19.85 -0.10 -4.69 16 4 C -0.03 -0.68 9.69 22.25 0.22 -0.47 16 5 C -0.23 -6.29 9.04 22.36 0.20 -6.09 16 6 C 0.21 7.27 6.63 22.51 0.15 7.42 16 7 O -0.33 -10.40 6.48 -83.21 -0.54 -10.94 16 8 C 0.01 0.23 9.81 113.37 1.11 1.34 16 9 C -0.71 -29.11 5.92 22.36 0.13 -28.97 16 10 S 2.70 118.20 5.25 -56.49 -0.30 117.90 16 11 O -1.00 -48.24 15.52 -128.00 -1.99 -50.23 16 12 O -0.97 -42.33 16.27 -122.93 -2.00 -44.33 16 13 N -0.98 -42.24 2.77 -519.84 -1.44 -43.67 16 14 C 0.12 4.14 5.86 86.38 0.51 4.64 16 15 C -0.17 -5.03 10.24 71.98 0.74 -4.30 16 16 C 0.22 10.68 4.50 85.63 0.39 11.06 16 17 C -0.53 -29.67 9.94 25.60 0.25 -29.41 16 18 H 0.04 2.76 8.06 -2.91 -0.02 2.74 16 19 C 0.02 1.35 5.47 84.66 0.46 1.81 16 20 N -0.94 -56.45 13.96 21.45 0.30 -56.15 16 21 Si 0.92 43.26 27.47 68.60 1.88 45.15 16 22 H -0.27 -12.74 7.11 99.48 0.71 -12.03 16 23 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 24 H -0.24 -10.42 6.54 99.48 0.65 -9.77 16 25 C -0.01 -0.21 9.20 22.25 0.20 -0.01 16 26 H 0.03 0.95 8.14 -2.39 -0.02 0.93 16 27 H 0.08 1.73 8.14 -2.38 -0.02 1.71 16 28 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 29 H 0.08 1.78 8.09 -2.39 -0.02 1.76 16 30 H 0.10 1.81 8.08 -2.39 -0.02 1.79 16 31 H 0.17 2.98 8.06 -2.91 -0.02 2.96 16 32 H 0.17 3.29 6.30 -2.91 -0.02 3.27 16 33 H 0.07 1.22 7.66 -2.39 -0.02 1.20 16 34 H 0.08 1.18 7.66 -2.39 -0.02 1.17 16 35 H 0.13 1.84 8.14 -2.38 -0.02 1.82 16 36 H 0.07 2.70 8.11 -2.39 -0.02 2.68 16 37 H 0.09 3.18 4.85 -2.39 -0.01 3.17 16 38 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 39 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 40 H 0.05 1.56 8.14 -2.38 -0.02 1.54 16 41 H 0.05 2.37 7.17 -2.39 -0.02 2.36 16 42 H 0.03 1.72 6.34 -2.39 -0.02 1.71 16 43 H 0.27 15.07 8.31 -92.71 -0.77 14.30 16 44 H 0.13 5.18 7.33 -2.91 -0.02 5.16 16 Total: -1.00 -75.14 368.87 2.01 -73.13 By element: Atomic # 1 Polarization: 20.83 SS G_CDS: 0.93 Total: 21.76 kcal Atomic # 6 Polarization: -57.77 SS G_CDS: 5.15 Total: -52.62 kcal Atomic # 7 Polarization: -98.69 SS G_CDS: -1.14 Total: -99.83 kcal Atomic # 8 Polarization: -100.97 SS G_CDS: -4.53 Total: -105.50 kcal Atomic # 14 Polarization: 43.26 SS G_CDS: 1.88 Total: 45.15 kcal Atomic # 16 Polarization: 118.20 SS G_CDS: -0.30 Total: 117.90 kcal Total: -75.14 2.01 -73.13 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192793502.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.275 kcal (2) G-P(sol) polarization free energy of solvation -75.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.129 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds