Wall clock time and date at job start Tue Mar 31 2020 14:41:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50704 * 109.47281 * 2 1 4 4 C 1.38290 * 119.94546 * 89.99309 * 3 2 1 5 5 C 1.38117 * 120.05849 * 180.02562 * 4 3 2 6 6 C 1.38759 * 119.94300 * 0.02562 * 5 4 3 7 7 O 1.35897 * 120.05496 * 179.97438 * 6 5 4 8 8 C 1.42894 * 117.00461 * 5.07277 * 7 6 5 9 9 C 1.38713 * 119.88534 * 0.02562 * 6 5 4 10 10 S 1.76205 * 120.02690 * 179.97438 * 9 6 5 11 11 O 1.42093 * 106.40376 * 181.96026 * 10 9 6 12 12 O 1.42100 * 106.39959 * 49.04030 * 10 9 6 13 13 N 1.65598 * 107.21577 * 295.50591 * 10 9 6 14 14 C 1.46501 * 120.00043 * 296.34092 * 13 10 9 15 15 H 1.09001 * 109.46964 * 1.73482 * 14 13 10 16 16 C 1.50694 * 109.47373 * 121.73654 * 14 13 10 17 17 H 1.08003 * 119.99901 * 0.02562 * 16 14 13 18 18 C 1.37880 * 120.00445 * 179.97438 * 16 14 13 19 19 N 1.31515 * 119.99544 * 0.02562 * 18 16 14 20 20 Si 1.86794 * 120.00171 * 180.02562 * 18 16 14 21 21 H 1.48499 * 109.47187 * 90.00272 * 20 18 16 22 22 H 1.48501 * 109.47064 * 210.00140 * 20 18 16 23 23 H 1.48500 * 109.47257 * 330.00046 * 20 18 16 24 24 C 1.53005 * 109.47257 * 241.73865 * 14 13 10 25 25 C 1.52998 * 109.46897 * 65.20177 * 24 14 13 26 26 C 1.38164 * 119.94748 * 0.24815 * 9 6 5 27 27 H 1.08997 * 109.47612 * 300.00324 * 1 2 3 28 28 H 1.09007 * 109.47073 * 60.00343 * 1 2 3 29 29 H 1.08998 * 109.47396 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47612 * 239.99676 * 2 1 3 31 31 H 1.08998 * 109.47145 * 119.99459 * 2 1 3 32 32 H 1.08003 * 119.96810 * 359.97438 * 4 3 2 33 33 H 1.08000 * 120.03416 * 179.97438 * 5 4 3 34 34 H 1.09000 * 109.47253 * 63.65389 * 8 7 6 35 35 H 1.08996 * 109.47687 * 183.66754 * 8 7 6 36 36 H 1.09010 * 109.46671 * 303.66417 * 8 7 6 37 37 H 0.97007 * 120.00422 * 116.34538 * 13 10 9 38 38 H 0.97002 * 119.99871 * 179.97438 * 19 18 16 39 39 H 1.08995 * 109.46851 * 185.20321 * 24 14 13 40 40 H 1.08996 * 109.46797 * 305.20447 * 24 14 13 41 41 H 1.09005 * 109.47046 * 177.67195 * 25 24 14 42 42 H 1.09000 * 109.47682 * 297.67398 * 25 24 14 43 43 H 1.09008 * 109.47238 * 57.67719 * 25 24 14 44 44 H 1.08002 * 119.97370 * 179.74838 * 26 9 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2623 2.0717 1.1983 5 6 2.7222 3.3741 1.2010 6 6 2.9530 4.0296 0.0000 7 8 3.4051 5.3112 0.0000 8 6 3.7274 5.8854 1.2681 9 6 2.7205 3.3748 -1.2006 10 16 3.0117 4.2039 -2.7279 11 8 2.6402 3.2951 -3.7550 12 8 4.3070 4.7801 -2.6310 13 7 1.9435 5.4665 -2.8116 14 6 0.5027 5.2052 -2.8579 15 1 0.3261 4.1313 -2.7971 16 6 -0.1699 5.8914 -1.6970 17 1 0.4171 6.4652 -0.9952 18 6 -1.5348 5.7877 -1.5315 19 7 -2.2496 5.0893 -2.3864 20 14 -2.3685 6.6389 -0.0929 21 1 -2.7717 8.0103 -0.4953 22 1 -3.5718 5.8671 0.3091 23 1 -1.4249 6.7160 1.0512 24 6 -0.0713 5.7429 -4.1703 25 6 0.5162 4.9565 -5.3439 26 6 2.2551 2.0740 -1.1979 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3634 -1.0276 -0.0005 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5137 0.8900 32 1 2.0813 1.5614 2.1328 33 1 2.9013 3.8821 2.1371 34 1 4.5566 5.3370 1.7151 35 1 4.0126 6.9287 1.1327 36 1 2.8586 5.8285 1.9241 37 1 2.2717 6.3792 -2.8301 38 1 -3.2098 5.0160 -2.2698 39 1 -1.1556 5.6319 -4.1651 40 1 0.1857 6.7970 -4.2744 41 1 0.0763 5.3117 -6.2759 42 1 1.5962 5.1008 -5.3738 43 1 0.2946 3.8966 -5.2184 44 1 2.0700 1.5652 -2.1324 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192837227.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:41:47 Heat of formation + Delta-G solvation = -102.592014 kcal Electronic energy + Delta-G solvation = -27702.648104 eV Core-core repulsion = 23939.975856 eV Total energy + Delta-G solvation = -3762.672249 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.07170 -37.78712 -36.48915 -35.73645 -35.12631 -33.47411 -32.15686 -31.18925 -30.42042 -28.95065 -27.12553 -26.56216 -23.57739 -23.02662 -22.90814 -21.03094 -20.01517 -18.79337 -18.12946 -17.10256 -16.58052 -16.27580 -16.08338 -15.58090 -15.12587 -14.57096 -14.47607 -14.39224 -14.02682 -13.68647 -13.35943 -13.14532 -13.00326 -12.84647 -12.54022 -12.10831 -11.89153 -11.65196 -11.60923 -11.59116 -11.33776 -11.28962 -11.18583 -11.04648 -10.87822 -10.84530 -10.80006 -10.76576 -10.35739 -10.10245 -9.88433 -9.62638 -9.40221 -9.13075 -8.47191 -8.13170 -8.00278 -6.08640 -4.16032 1.05517 1.32598 1.56297 3.23017 3.30406 3.31252 3.32300 3.61694 3.91330 4.36775 4.44993 4.77092 4.81600 5.00437 5.17562 5.20207 5.21010 5.23077 5.28436 5.48879 5.53370 5.58962 5.65586 5.79781 5.86364 5.96525 6.14669 6.23399 6.30143 6.33360 6.39575 6.42843 6.49018 6.64551 6.74442 6.86452 6.99531 7.18735 7.32941 7.38328 7.67954 7.73741 7.97554 8.09515 8.34269 8.88012 9.49663 10.95816 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.008908 B = 0.006632 C = 0.005849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3142.429815 B = 4220.891537 C = 4786.392683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.076 4.076 3 C -0.145 4.145 4 C -0.030 4.030 5 C -0.228 4.228 6 C 0.231 3.769 7 O -0.303 6.303 8 C 0.029 3.971 9 C -0.689 4.689 10 S 2.698 3.302 11 O -0.968 6.968 12 O -0.978 6.978 13 N -1.094 6.094 14 C 0.282 3.718 15 H 0.045 0.955 16 C -0.523 4.523 17 H 0.063 0.937 18 C 0.065 3.935 19 N -0.886 5.886 20 Si 0.893 3.107 21 H -0.280 1.280 22 H -0.286 1.286 23 H -0.276 1.276 24 C -0.127 4.127 25 C -0.146 4.146 26 C 0.020 3.980 27 H 0.054 0.946 28 H 0.063 0.937 29 H 0.054 0.946 30 H 0.072 0.928 31 H 0.067 0.933 32 H 0.126 0.874 33 H 0.132 0.868 34 H 0.056 0.944 35 H 0.104 0.896 36 H 0.059 0.941 37 H 0.408 0.592 38 H 0.263 0.737 39 H 0.102 0.898 40 H 0.037 0.963 41 H 0.032 0.968 42 H 0.036 0.964 43 H 0.051 0.949 44 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.734 -5.106 7.165 11.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.114 4.114 3 C -0.146 4.146 4 C -0.048 4.048 5 C -0.247 4.247 6 C 0.183 3.817 7 O -0.214 6.214 8 C -0.066 4.066 9 C -0.775 4.775 10 S 2.785 3.215 11 O -0.958 6.958 12 O -0.968 6.968 13 N -0.855 5.855 14 C 0.177 3.823 15 H 0.063 0.937 16 C -0.562 4.562 17 H 0.081 0.919 18 C -0.137 4.137 19 N -0.524 5.524 20 Si 0.721 3.279 21 H -0.206 1.206 22 H -0.212 1.212 23 H -0.201 1.201 24 C -0.167 4.167 25 C -0.203 4.203 26 C 0.000 4.000 27 H 0.074 0.926 28 H 0.082 0.918 29 H 0.074 0.926 30 H 0.090 0.910 31 H 0.086 0.914 32 H 0.144 0.856 33 H 0.150 0.850 34 H 0.074 0.926 35 H 0.122 0.878 36 H 0.078 0.922 37 H 0.241 0.759 38 H 0.073 0.927 39 H 0.121 0.879 40 H 0.056 0.944 41 H 0.051 0.949 42 H 0.055 0.945 43 H 0.070 0.930 44 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 8.122 -5.459 6.377 11.680 hybrid contribution -0.900 0.815 1.951 2.298 sum 7.222 -4.644 8.328 11.961 Atomic orbital electron populations 1.21799 0.94614 1.01408 1.02987 1.20447 0.96337 0.92062 1.02527 1.19833 1.04413 0.97386 0.92973 1.20963 0.92872 0.93328 0.97648 1.21203 1.09481 0.97148 0.96906 1.18230 0.87732 0.82821 0.92884 1.86143 1.78328 1.24112 1.32840 1.23116 1.00085 0.99353 0.84071 1.30290 1.21080 1.07133 1.18984 1.01575 0.72706 0.73514 0.73658 1.93547 1.83958 1.65047 1.53250 1.93520 1.38430 1.77547 1.87282 1.55390 1.19730 1.20344 1.89997 1.18530 0.73127 0.96738 0.93877 0.93687 1.21461 0.92311 1.32381 1.10079 0.91925 1.24894 0.97287 0.95253 0.96295 1.69864 1.06708 1.40182 1.35691 0.86592 0.79016 0.79596 0.82739 1.20609 1.21231 1.20123 1.21902 1.03952 0.97244 0.93611 1.21816 0.99520 1.00886 0.98114 1.20674 0.89280 0.91053 0.98952 0.92648 0.91775 0.92648 0.90960 0.91404 0.85626 0.85041 0.92581 0.87803 0.92245 0.75907 0.92711 0.87942 0.94371 0.94936 0.94455 0.93013 0.83703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.86 9.89 37.15 0.37 -1.50 16 2 C -0.08 -0.91 6.06 -27.88 -0.17 -1.08 16 3 C -0.14 -2.18 5.14 -104.60 -0.54 -2.72 16 4 C -0.03 -0.42 9.69 -39.61 -0.38 -0.80 16 5 C -0.23 -3.45 9.07 -39.43 -0.36 -3.80 16 6 C 0.23 4.19 6.63 -39.21 -0.26 3.93 16 7 O -0.30 -5.28 9.31 -28.43 -0.26 -5.55 16 8 C 0.03 0.35 9.86 101.05 1.00 1.34 16 9 C -0.69 -13.34 5.87 -39.43 -0.23 -13.57 16 10 S 2.70 55.60 5.16 -107.50 -0.55 55.05 16 11 O -0.97 -21.20 15.91 -57.17 -0.91 -22.11 16 12 O -0.98 -21.26 17.33 -62.29 -1.08 -22.34 16 13 N -1.09 -23.00 4.87 -5.88 -0.03 -23.03 16 14 C 0.28 6.74 2.26 -69.08 -0.16 6.58 16 15 H 0.05 1.17 7.73 -51.93 -0.40 0.77 16 16 C -0.52 -13.43 8.84 -34.44 -0.30 -13.73 16 17 H 0.06 1.60 7.81 -52.48 -0.41 1.19 16 18 C 0.07 1.70 5.29 -17.82 -0.09 1.61 16 19 N -0.89 -23.89 11.29 55.43 0.63 -23.27 16 20 Si 0.89 20.44 29.54 -169.99 -5.02 15.42 16 21 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 22 H -0.29 -6.57 7.11 56.52 0.40 -6.16 16 23 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 24 C -0.13 -2.95 5.45 -26.73 -0.15 -3.10 16 25 C -0.15 -3.08 9.35 37.16 0.35 -2.73 16 26 C 0.02 0.34 9.20 -39.61 -0.36 -0.02 16 27 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.06 0.91 8.14 -51.92 -0.42 0.49 16 29 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 30 H 0.07 0.80 8.09 -51.93 -0.42 0.38 16 31 H 0.07 0.67 8.08 -51.93 -0.42 0.25 16 32 H 0.13 1.34 8.06 -52.48 -0.42 0.92 16 33 H 0.13 1.57 6.28 -52.49 -0.33 1.24 16 34 H 0.06 0.56 8.06 -51.93 -0.42 0.14 16 35 H 0.10 1.05 8.14 -51.93 -0.42 0.62 16 36 H 0.06 0.66 7.21 -51.92 -0.37 0.29 16 37 H 0.41 7.84 8.96 -34.48 -0.31 7.53 16 38 H 0.26 6.80 8.31 -40.82 -0.34 6.46 16 39 H 0.10 2.61 5.95 -51.93 -0.31 2.31 16 40 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 41 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.04 0.76 7.52 -51.93 -0.39 0.37 16 43 H 0.05 1.13 8.14 -51.92 -0.42 0.70 16 44 H 0.15 2.43 7.33 -52.49 -0.38 2.04 16 LS Contribution 373.72 15.07 5.63 5.63 Total: -1.00 -31.49 373.72 -9.58 -41.07 By element: Atomic # 1 Polarization: 15.40 SS G_CDS: -6.68 Total: 8.72 kcal Atomic # 6 Polarization: -28.30 SS G_CDS: -1.29 Total: -29.59 kcal Atomic # 7 Polarization: -46.90 SS G_CDS: 0.60 Total: -46.30 kcal Atomic # 8 Polarization: -47.74 SS G_CDS: -2.25 Total: -49.99 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -5.02 Total: 15.42 kcal Atomic # 16 Polarization: 55.60 SS G_CDS: -0.55 Total: 55.05 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -31.49 -9.58 -41.07 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192837227.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.523 kcal (2) G-P(sol) polarization free energy of solvation -31.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.069 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds