Wall clock time and date at job start Tue Mar 31 2020 14:41:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50704 * 109.47281 * 2 1 4 4 C 1.38290 * 119.94546 * 89.99309 * 3 2 1 5 5 C 1.38117 * 120.05849 * 180.02562 * 4 3 2 6 6 C 1.38759 * 119.94300 * 0.02562 * 5 4 3 7 7 O 1.35897 * 120.05496 * 179.97438 * 6 5 4 8 8 C 1.42894 * 117.00461 * 5.07277 * 7 6 5 9 9 C 1.38713 * 119.88534 * 0.02562 * 6 5 4 10 10 S 1.76205 * 120.02690 * 179.97438 * 9 6 5 11 11 O 1.42093 * 106.40376 * 181.96026 * 10 9 6 12 12 O 1.42100 * 106.39959 * 49.04030 * 10 9 6 13 13 N 1.65598 * 107.21577 * 295.50591 * 10 9 6 14 14 C 1.46501 * 120.00043 * 296.34092 * 13 10 9 15 15 H 1.09001 * 109.46964 * 1.73482 * 14 13 10 16 16 C 1.50694 * 109.47373 * 121.73654 * 14 13 10 17 17 H 1.08003 * 119.99901 * 0.02562 * 16 14 13 18 18 C 1.37880 * 120.00445 * 179.97438 * 16 14 13 19 19 N 1.31515 * 119.99544 * 0.02562 * 18 16 14 20 20 Si 1.86794 * 120.00171 * 180.02562 * 18 16 14 21 21 H 1.48499 * 109.47187 * 90.00272 * 20 18 16 22 22 H 1.48501 * 109.47064 * 210.00140 * 20 18 16 23 23 H 1.48500 * 109.47257 * 330.00046 * 20 18 16 24 24 C 1.53005 * 109.47257 * 241.73865 * 14 13 10 25 25 C 1.52998 * 109.46897 * 65.20177 * 24 14 13 26 26 C 1.38164 * 119.94748 * 0.24815 * 9 6 5 27 27 H 1.08997 * 109.47612 * 300.00324 * 1 2 3 28 28 H 1.09007 * 109.47073 * 60.00343 * 1 2 3 29 29 H 1.08998 * 109.47396 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47612 * 239.99676 * 2 1 3 31 31 H 1.08998 * 109.47145 * 119.99459 * 2 1 3 32 32 H 1.08003 * 119.96810 * 359.97438 * 4 3 2 33 33 H 1.08000 * 120.03416 * 179.97438 * 5 4 3 34 34 H 1.09000 * 109.47253 * 63.65389 * 8 7 6 35 35 H 1.08996 * 109.47687 * 183.66754 * 8 7 6 36 36 H 1.09010 * 109.46671 * 303.66417 * 8 7 6 37 37 H 0.97007 * 120.00422 * 116.34538 * 13 10 9 38 38 H 0.97002 * 119.99871 * 179.97438 * 19 18 16 39 39 H 1.08995 * 109.46851 * 185.20321 * 24 14 13 40 40 H 1.08996 * 109.46797 * 305.20447 * 24 14 13 41 41 H 1.09005 * 109.47046 * 177.67195 * 25 24 14 42 42 H 1.09000 * 109.47682 * 297.67398 * 25 24 14 43 43 H 1.09008 * 109.47238 * 57.67719 * 25 24 14 44 44 H 1.08002 * 119.97370 * 179.74838 * 26 9 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2623 2.0717 1.1983 5 6 2.7222 3.3741 1.2010 6 6 2.9530 4.0296 0.0000 7 8 3.4051 5.3112 0.0000 8 6 3.7274 5.8854 1.2681 9 6 2.7205 3.3748 -1.2006 10 16 3.0117 4.2039 -2.7279 11 8 2.6402 3.2951 -3.7550 12 8 4.3070 4.7801 -2.6310 13 7 1.9435 5.4665 -2.8116 14 6 0.5027 5.2052 -2.8579 15 1 0.3261 4.1313 -2.7971 16 6 -0.1699 5.8914 -1.6970 17 1 0.4171 6.4652 -0.9952 18 6 -1.5348 5.7877 -1.5315 19 7 -2.2496 5.0893 -2.3864 20 14 -2.3685 6.6389 -0.0929 21 1 -2.7717 8.0103 -0.4953 22 1 -3.5718 5.8671 0.3091 23 1 -1.4249 6.7160 1.0512 24 6 -0.0713 5.7429 -4.1703 25 6 0.5162 4.9565 -5.3439 26 6 2.2551 2.0740 -1.1979 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3634 -1.0276 -0.0005 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5137 0.8900 32 1 2.0813 1.5614 2.1328 33 1 2.9013 3.8821 2.1371 34 1 4.5566 5.3370 1.7151 35 1 4.0126 6.9287 1.1327 36 1 2.8586 5.8285 1.9241 37 1 2.2717 6.3792 -2.8301 38 1 -3.2098 5.0160 -2.2698 39 1 -1.1556 5.6319 -4.1651 40 1 0.1857 6.7970 -4.2744 41 1 0.0763 5.3117 -6.2759 42 1 1.5962 5.1008 -5.3738 43 1 0.2946 3.8966 -5.2184 44 1 2.0700 1.5652 -2.1324 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192837227.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:41:46 Heat of formation + Delta-G solvation = -122.991024 kcal Electronic energy + Delta-G solvation = -27703.532672 eV Core-core repulsion = 23939.975856 eV Total energy + Delta-G solvation = -3763.556816 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.26555 -38.97634 -38.18245 -37.55724 -36.82460 -34.54062 -34.11281 -32.41527 -32.18951 -30.05993 -28.51894 -28.11919 -24.84880 -24.66881 -24.21806 -22.20509 -21.85786 -20.35015 -19.44530 -18.85725 -18.14276 -17.69400 -17.55565 -16.97276 -16.71988 -16.19840 -15.69451 -15.54366 -15.43858 -15.10386 -14.83118 -14.67263 -14.43505 -14.22952 -13.61591 -13.50763 -13.44169 -13.26163 -13.06524 -13.05006 -12.99388 -12.94031 -12.75699 -12.62731 -12.61045 -12.11549 -12.06103 -11.87194 -11.82588 -11.77476 -11.53423 -11.48042 -11.24779 -10.47703 -10.37741 -9.93002 -9.21846 -8.07498 -6.21251 -0.39893 -0.08911 0.34007 1.42157 1.43998 1.52200 2.12602 2.25869 2.43499 2.51127 2.87431 3.19572 3.47047 3.77550 3.86678 3.98811 4.20096 4.29816 4.34754 4.37612 4.50581 4.52119 4.55570 4.61988 4.67957 4.70522 4.73817 4.74338 4.93147 5.00600 5.07304 5.09823 5.15905 5.17636 5.37451 5.40630 5.49268 5.52507 5.69887 5.72374 5.82199 6.09074 6.21816 6.23293 6.48878 6.87985 7.47177 8.96129 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.008908 B = 0.006632 C = 0.005849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3142.429815 B = 4220.891537 C = 4786.392683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.074 4.074 3 C -0.147 4.147 4 C -0.023 4.023 5 C -0.228 4.228 6 C 0.211 3.789 7 O -0.330 6.330 8 C 0.015 3.985 9 C -0.716 4.716 10 S 2.707 3.293 11 O -0.990 6.990 12 O -0.993 6.993 13 N -1.093 6.093 14 C 0.290 3.710 15 H 0.018 0.982 16 C -0.532 4.532 17 H 0.061 0.939 18 C 0.022 3.978 19 N -0.911 5.911 20 Si 0.950 3.050 21 H -0.276 1.276 22 H -0.286 1.286 23 H -0.269 1.269 24 C -0.125 4.125 25 C -0.139 4.139 26 C -0.007 4.007 27 H 0.054 0.946 28 H 0.032 0.968 29 H 0.078 0.922 30 H 0.076 0.924 31 H 0.100 0.900 32 H 0.170 0.830 33 H 0.166 0.834 34 H 0.078 0.922 35 H 0.120 0.880 36 H 0.070 0.930 37 H 0.414 0.586 38 H 0.263 0.737 39 H 0.080 0.920 40 H 0.045 0.955 41 H 0.056 0.944 42 H 0.040 0.960 43 H 0.037 0.963 44 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.897 -5.445 9.844 13.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.111 4.111 3 C -0.148 4.148 4 C -0.041 4.041 5 C -0.247 4.247 6 C 0.163 3.837 7 O -0.243 6.243 8 C -0.079 4.079 9 C -0.805 4.805 10 S 2.798 3.202 11 O -0.981 6.981 12 O -0.983 6.983 13 N -0.853 5.853 14 C 0.185 3.815 15 H 0.036 0.964 16 C -0.571 4.571 17 H 0.079 0.921 18 C -0.178 4.178 19 N -0.550 5.550 20 Si 0.776 3.224 21 H -0.202 1.202 22 H -0.212 1.212 23 H -0.194 1.194 24 C -0.165 4.165 25 C -0.197 4.197 26 C -0.026 4.026 27 H 0.073 0.927 28 H 0.052 0.948 29 H 0.097 0.903 30 H 0.095 0.905 31 H 0.119 0.881 32 H 0.187 0.813 33 H 0.183 0.817 34 H 0.097 0.903 35 H 0.138 0.862 36 H 0.088 0.912 37 H 0.248 0.752 38 H 0.073 0.927 39 H 0.098 0.902 40 H 0.063 0.937 41 H 0.075 0.925 42 H 0.060 0.940 43 H 0.056 0.944 44 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 8.308 -5.764 9.024 13.553 hybrid contribution -0.915 0.888 1.188 1.742 sum 7.393 -4.876 10.212 13.517 Atomic orbital electron populations 1.21792 0.95030 1.02484 1.01436 1.20536 0.95788 0.90398 1.04426 1.20246 1.03303 0.98825 0.92417 1.21519 0.90732 0.92972 0.98876 1.21658 1.08326 0.97638 0.97100 1.18506 0.88352 0.83435 0.93434 1.86102 1.78392 1.24008 1.35796 1.23501 1.01391 1.00380 0.82634 1.29984 1.23992 1.08107 1.18466 1.00987 0.72147 0.73049 0.73974 1.93504 1.84119 1.65359 1.55084 1.93485 1.39042 1.77994 1.87823 1.55202 1.18604 1.21025 1.90478 1.18239 0.74410 0.94939 0.93923 0.96414 1.21675 0.92646 1.32279 1.10525 0.92073 1.25581 0.97875 0.95869 0.98514 1.69990 1.06833 1.41163 1.37049 0.85679 0.77986 0.78592 0.80111 1.20194 1.21166 1.19397 1.21806 1.02573 0.97918 0.94219 1.21735 0.99794 0.99724 0.98427 1.20828 0.90621 0.91005 1.00148 0.92659 0.94825 0.90299 0.90491 0.88116 0.81303 0.81667 0.90324 0.86197 0.91181 0.75164 0.92745 0.90182 0.93664 0.92493 0.94044 0.94413 0.84454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.47 9.89 71.98 0.71 -2.76 16 2 C -0.07 -1.60 6.06 29.85 0.18 -1.42 16 3 C -0.15 -4.20 5.14 -19.85 -0.10 -4.30 16 4 C -0.02 -0.57 9.69 22.25 0.22 -0.36 16 5 C -0.23 -6.30 9.07 22.37 0.20 -6.09 16 6 C 0.21 7.50 6.63 22.51 0.15 7.65 16 7 O -0.33 -11.34 9.31 -83.77 -0.78 -12.12 16 8 C 0.01 0.32 9.86 113.37 1.12 1.44 16 9 C -0.72 -28.30 5.87 22.37 0.13 -28.17 16 10 S 2.71 115.69 5.16 -56.49 -0.29 115.39 16 11 O -0.99 -45.47 15.91 -128.00 -2.04 -47.50 16 12 O -0.99 -44.35 17.33 -123.11 -2.13 -46.48 16 13 N -1.09 -47.31 4.87 -172.52 -0.84 -48.15 16 14 C 0.29 14.30 2.26 44.24 0.10 14.40 16 15 H 0.02 0.98 7.73 -2.39 -0.02 0.96 16 16 C -0.53 -27.63 8.84 25.60 0.23 -27.40 16 17 H 0.06 3.13 7.81 -2.91 -0.02 3.11 16 18 C 0.02 1.13 5.29 84.66 0.45 1.58 16 19 N -0.91 -49.95 11.29 21.45 0.24 -49.70 16 20 Si 0.95 41.55 29.54 68.60 2.03 43.58 16 21 H -0.28 -11.85 7.11 99.48 0.71 -11.14 16 22 H -0.29 -12.40 7.11 99.48 0.71 -11.69 16 23 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 24 C -0.13 -5.94 5.45 30.60 0.17 -5.77 16 25 C -0.14 -5.97 9.35 71.98 0.67 -5.29 16 26 C -0.01 -0.24 9.20 22.25 0.20 -0.04 16 27 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 28 H 0.03 0.96 8.14 -2.38 -0.02 0.94 16 29 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 30 H 0.08 1.58 8.09 -2.39 -0.02 1.57 16 31 H 0.10 1.54 8.08 -2.39 -0.02 1.52 16 32 H 0.17 2.69 8.06 -2.91 -0.02 2.66 16 33 H 0.17 3.29 6.28 -2.91 -0.02 3.27 16 34 H 0.08 1.36 8.06 -2.39 -0.02 1.34 16 35 H 0.12 2.19 8.14 -2.39 -0.02 2.17 16 36 H 0.07 1.38 7.21 -2.38 -0.02 1.36 16 37 H 0.41 16.36 8.96 -96.73 -0.87 15.49 16 38 H 0.26 13.77 8.31 -92.71 -0.77 13.00 16 39 H 0.08 4.19 5.95 -2.39 -0.01 4.18 16 40 H 0.04 2.03 8.14 -2.39 -0.02 2.01 16 41 H 0.06 2.12 8.14 -2.38 -0.02 2.10 16 42 H 0.04 1.70 7.52 -2.39 -0.02 1.69 16 43 H 0.04 1.69 8.14 -2.38 -0.02 1.67 16 44 H 0.14 4.92 7.33 -2.91 -0.02 4.89 16 Total: -1.00 -69.19 373.72 0.75 -68.44 By element: Atomic # 1 Polarization: 32.94 SS G_CDS: 0.14 Total: 33.08 kcal Atomic # 6 Polarization: -60.96 SS G_CDS: 4.43 Total: -56.53 kcal Atomic # 7 Polarization: -97.25 SS G_CDS: -0.60 Total: -97.85 kcal Atomic # 8 Polarization: -101.16 SS G_CDS: -4.95 Total: -106.11 kcal Atomic # 14 Polarization: 41.55 SS G_CDS: 2.03 Total: 43.58 kcal Atomic # 16 Polarization: 115.69 SS G_CDS: -0.29 Total: 115.39 kcal Total: -69.19 0.75 -68.44 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192837227.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.550 kcal (2) G-P(sol) polarization free energy of solvation -69.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.441 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds