Wall clock time and date at job start Tue Mar 31 2020 14:41:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50698 * 109.47094 * 2 1 4 4 C 1.38291 * 119.94480 * 89.99924 * 3 2 1 5 5 C 1.38113 * 120.05464 * 180.02562 * 4 3 2 6 6 C 1.38756 * 119.94744 * 0.02562 * 5 4 3 7 7 O 1.35900 * 120.05458 * 179.97438 * 6 5 4 8 8 C 1.42901 * 117.00274 * 0.02562 * 7 6 5 9 9 C 1.38705 * 119.88741 * 0.02562 * 6 5 4 10 10 S 1.76199 * 120.02957 * 179.97438 * 9 6 5 11 11 O 1.42103 * 106.40461 * 181.11962 * 10 9 6 12 12 O 1.42105 * 106.40201 * 48.19975 * 10 9 6 13 13 N 1.65598 * 107.21827 * 294.66131 * 10 9 6 14 14 C 1.46498 * 119.99842 * 294.35937 * 13 10 9 15 15 H 1.09004 * 109.47444 * 25.63544 * 14 13 10 16 16 C 1.50699 * 109.47177 * 265.63093 * 14 13 10 17 17 H 1.07998 * 120.00298 * 0.02562 * 16 14 13 18 18 C 1.37885 * 120.00239 * 179.97438 * 16 14 13 19 19 N 1.31517 * 119.99561 * 0.02562 * 18 16 14 20 20 Si 1.86789 * 120.00097 * 179.97438 * 18 16 14 21 21 H 1.48501 * 109.47144 * 60.00502 * 20 18 16 22 22 H 1.48499 * 109.47328 * 180.02562 * 20 18 16 23 23 H 1.48501 * 109.47540 * 300.00552 * 20 18 16 24 24 C 1.53000 * 109.47223 * 145.63096 * 14 13 10 25 25 C 1.53002 * 109.47275 * 295.31929 * 24 14 13 26 26 C 1.38163 * 119.94600 * 0.24700 * 9 6 5 27 27 H 1.09007 * 109.46906 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.46857 * 299.99588 * 1 2 3 29 29 H 1.08997 * 109.47076 * 60.00144 * 1 2 3 30 30 H 1.08995 * 109.47157 * 240.00045 * 2 1 3 31 31 H 1.08998 * 109.47318 * 120.00339 * 2 1 3 32 32 H 1.08000 * 119.97169 * 359.97438 * 4 3 2 33 33 H 1.08006 * 120.02878 * 179.97438 * 5 4 3 34 34 H 1.08991 * 109.47497 * 300.00312 * 8 7 6 35 35 H 1.09005 * 109.46605 * 60.00384 * 8 7 6 36 36 H 1.09000 * 109.46731 * 179.97438 * 8 7 6 37 37 H 0.96996 * 120.00493 * 114.35883 * 13 10 9 38 38 H 0.97003 * 119.99808 * 179.97438 * 19 18 16 39 39 H 1.09005 * 109.47419 * 175.31544 * 24 14 13 40 40 H 1.09002 * 109.46987 * 55.32005 * 24 14 13 41 41 H 1.09003 * 109.46797 * 295.68561 * 25 24 14 42 42 H 1.08997 * 109.47043 * 175.68517 * 25 24 14 43 43 H 1.08996 * 109.46989 * 55.68396 * 25 24 14 44 44 H 1.08001 * 119.97737 * 179.74938 * 26 9 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2624 2.0716 1.1983 5 6 2.7223 3.3739 1.2009 6 6 2.9530 4.0295 0.0000 7 8 3.4050 5.3112 0.0000 8 6 3.6218 5.9226 1.2733 9 6 2.7204 3.3749 -1.2006 10 16 3.0114 4.2041 -2.7278 11 8 2.6585 3.2881 -3.7553 12 8 4.2986 4.7970 -2.6236 13 7 1.9277 5.4527 -2.8220 14 6 0.4934 5.1717 -2.9213 15 1 0.2821 4.1986 -2.4779 16 6 0.0824 5.1631 -4.3711 17 1 0.8162 5.3480 -5.1415 18 6 -1.2305 4.9182 -4.7141 19 7 -2.1241 4.6925 -3.7759 20 14 -1.7400 4.9082 -6.5111 21 1 -0.9783 3.8595 -7.2358 22 1 -3.1939 4.6233 -6.6119 23 1 -1.4530 6.2344 -7.1145 24 6 -0.2910 6.2530 -2.1752 25 6 0.0394 6.1848 -0.6829 26 6 2.2550 2.0740 -1.1979 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.8934 -0.5138 -0.8899 31 1 1.8934 -0.5139 0.8899 32 1 2.0816 1.5614 2.1328 33 1 2.9015 3.8820 2.1371 34 1 2.6857 5.9422 1.8311 35 1 4.3643 5.3502 1.8294 36 1 3.9815 6.9416 1.1304 37 1 2.2426 6.3701 -2.8113 38 1 -3.0478 4.5206 -4.0172 39 1 -1.3594 6.0911 -2.3186 40 1 -0.0169 7.2339 -2.5636 41 1 -0.3044 5.2330 -0.2778 42 1 -0.4593 7.0025 -0.1626 43 1 1.1173 6.2701 -0.5452 44 1 2.0699 1.5652 -2.1324 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192837228.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:41:51 Heat of formation + Delta-G solvation = -100.424669 kcal Electronic energy + Delta-G solvation = -27673.383866 eV Core-core repulsion = 23910.805600 eV Total energy + Delta-G solvation = -3762.578266 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.21435 -37.90467 -36.38048 -35.79671 -35.02168 -33.55886 -32.08639 -31.28041 -30.52688 -29.05926 -27.24227 -26.53541 -23.66711 -23.10396 -22.95784 -21.10854 -20.10121 -18.78980 -18.18335 -16.86769 -16.70680 -16.44537 -15.97875 -15.78180 -15.15054 -14.61697 -14.51884 -14.39182 -14.10470 -13.69772 -13.39801 -13.21788 -13.03690 -12.88993 -12.65379 -12.19178 -11.96758 -11.80935 -11.68612 -11.52102 -11.27236 -11.16080 -11.12338 -11.10060 -10.94342 -10.90627 -10.85228 -10.71257 -10.26951 -10.12714 -9.76241 -9.73842 -9.60592 -9.22575 -8.36106 -8.16319 -8.10728 -6.00234 -4.05904 0.96448 1.31586 1.43406 3.16989 3.37485 3.40193 3.46132 3.52245 3.96761 4.44898 4.52175 4.69390 4.70481 4.88868 5.06952 5.08970 5.13826 5.22289 5.29414 5.41501 5.43296 5.52602 5.60265 5.72080 5.78578 5.91758 6.07280 6.13685 6.15661 6.19121 6.23858 6.32599 6.38576 6.55487 6.60089 6.75633 6.85540 6.99436 7.18652 7.24469 7.66159 7.71360 7.97821 8.21209 8.32442 8.97023 9.59500 11.04151 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.011529 B = 0.005599 C = 0.004859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2428.023288 B = 4999.733496 C = 5760.817110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.078 4.078 3 C -0.143 4.143 4 C -0.031 4.031 5 C -0.230 4.230 6 C 0.223 3.777 7 O -0.304 6.304 8 C 0.027 3.973 9 C -0.694 4.694 10 S 2.696 3.304 11 O -0.952 6.952 12 O -0.978 6.978 13 N -1.096 6.096 14 C 0.284 3.716 15 H 0.040 0.960 16 C -0.517 4.517 17 H 0.063 0.937 18 C 0.063 3.937 19 N -0.894 5.894 20 Si 0.896 3.104 21 H -0.275 1.275 22 H -0.288 1.288 23 H -0.277 1.277 24 C -0.124 4.124 25 C -0.149 4.149 26 C 0.021 3.979 27 H 0.056 0.944 28 H 0.053 0.947 29 H 0.064 0.936 30 H 0.073 0.927 31 H 0.068 0.932 32 H 0.127 0.873 33 H 0.132 0.868 34 H 0.059 0.941 35 H 0.057 0.943 36 H 0.104 0.896 37 H 0.405 0.595 38 H 0.262 0.738 39 H 0.104 0.896 40 H 0.040 0.960 41 H 0.040 0.960 42 H 0.033 0.967 43 H 0.044 0.956 44 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.967 -3.260 13.691 15.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.115 4.115 3 C -0.144 4.144 4 C -0.050 4.050 5 C -0.249 4.249 6 C 0.175 3.825 7 O -0.216 6.216 8 C -0.067 4.067 9 C -0.779 4.779 10 S 2.782 3.218 11 O -0.942 6.942 12 O -0.968 6.968 13 N -0.856 5.856 14 C 0.179 3.821 15 H 0.057 0.943 16 C -0.557 4.557 17 H 0.082 0.918 18 C -0.139 4.139 19 N -0.533 5.533 20 Si 0.723 3.277 21 H -0.200 1.200 22 H -0.214 1.214 23 H -0.203 1.203 24 C -0.164 4.164 25 C -0.207 4.207 26 C 0.002 3.998 27 H 0.075 0.925 28 H 0.073 0.927 29 H 0.083 0.917 30 H 0.092 0.908 31 H 0.087 0.913 32 H 0.144 0.856 33 H 0.150 0.850 34 H 0.077 0.923 35 H 0.075 0.925 36 H 0.123 0.877 37 H 0.239 0.761 38 H 0.072 0.928 39 H 0.123 0.877 40 H 0.059 0.941 41 H 0.059 0.941 42 H 0.052 0.948 43 H 0.063 0.937 44 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 7.367 -3.600 12.967 15.342 hybrid contribution -0.678 0.286 0.221 0.769 sum 6.689 -3.314 13.188 15.155 Atomic orbital electron populations 1.21803 0.94573 1.01603 1.02851 1.20466 0.96372 0.92004 1.02690 1.19887 1.04177 0.97423 0.92925 1.20984 0.92987 0.93296 0.97685 1.21208 1.09637 0.97202 0.96841 1.18270 0.88306 0.83053 0.92896 1.86165 1.79268 1.23735 1.32412 1.23131 1.01073 0.98689 0.83855 1.30520 1.20670 1.07420 1.19306 1.01766 0.72712 0.73662 0.73612 1.93586 1.83781 1.64481 1.52398 1.93520 1.38837 1.77199 1.87237 1.55434 1.20358 1.20042 1.89802 1.18486 0.73100 0.94738 0.95732 0.94269 1.21518 0.94170 1.47995 0.91991 0.91842 1.24885 0.96422 0.94943 0.97604 1.69839 1.02775 1.48683 1.32046 0.86591 0.77159 0.78710 0.85207 1.19990 1.21363 1.20280 1.21846 1.04801 0.98329 0.91410 1.21863 1.00101 0.99675 0.99043 1.20777 0.88820 0.91039 0.99156 0.92529 0.92739 0.91706 0.90804 0.91340 0.85556 0.85031 0.92259 0.92488 0.87731 0.76135 0.92796 0.87749 0.94103 0.94101 0.94823 0.93712 0.83387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.74 9.89 37.16 0.37 -1.38 16 2 C -0.08 -0.88 6.06 -27.88 -0.17 -1.05 16 3 C -0.14 -2.00 5.14 -104.60 -0.54 -2.54 16 4 C -0.03 -0.39 9.69 -39.61 -0.38 -0.77 16 5 C -0.23 -3.03 9.04 -39.44 -0.36 -3.39 16 6 C 0.22 3.61 6.63 -39.22 -0.26 3.35 16 7 O -0.30 -4.68 8.52 -29.53 -0.25 -4.93 16 8 C 0.03 0.28 9.81 101.05 0.99 1.27 16 9 C -0.69 -12.75 5.79 -39.44 -0.23 -12.97 16 10 S 2.70 56.56 5.24 -107.50 -0.56 56.00 16 11 O -0.95 -22.79 16.72 -57.17 -0.96 -23.75 16 12 O -0.98 -21.38 17.28 -62.59 -1.08 -22.46 16 13 N -1.10 -23.02 4.83 -5.88 -0.03 -23.05 16 14 C 0.28 6.80 2.15 -69.08 -0.15 6.66 16 15 H 0.04 1.01 7.89 -51.93 -0.41 0.61 16 16 C -0.52 -14.07 8.84 -34.44 -0.30 -14.37 16 17 H 0.06 1.76 7.81 -52.49 -0.41 1.35 16 18 C 0.06 1.71 5.29 -17.82 -0.09 1.62 16 19 N -0.89 -24.57 11.30 55.43 0.63 -23.94 16 20 Si 0.90 21.48 29.54 -169.99 -5.02 16.46 16 21 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 22 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 23 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 24 C -0.12 -2.75 5.37 -26.73 -0.14 -2.90 16 25 C -0.15 -2.78 9.85 37.16 0.37 -2.42 16 26 C 0.02 0.36 9.20 -39.60 -0.36 0.00 16 27 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 29 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.07 0.80 8.09 -51.93 -0.42 0.38 16 31 H 0.07 0.63 8.08 -51.93 -0.42 0.21 16 32 H 0.13 1.17 8.06 -52.49 -0.42 0.75 16 33 H 0.13 1.32 6.30 -52.48 -0.33 0.98 16 34 H 0.06 0.52 7.66 -51.93 -0.40 0.13 16 35 H 0.06 0.48 7.66 -51.93 -0.40 0.08 16 36 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.41 7.65 8.83 -34.47 -0.30 7.34 16 38 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 39 H 0.10 2.60 5.96 -51.93 -0.31 2.29 16 40 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 41 H 0.04 0.78 8.14 -51.93 -0.42 0.35 16 42 H 0.03 0.56 8.14 -51.93 -0.42 0.13 16 43 H 0.04 0.77 6.86 -51.93 -0.36 0.41 16 44 H 0.15 2.52 7.33 -52.49 -0.38 2.13 16 LS Contribution 373.33 15.07 5.63 5.63 Total: -1.00 -32.80 373.33 -9.57 -42.37 By element: Atomic # 1 Polarization: 13.23 SS G_CDS: -6.66 Total: 6.58 kcal Atomic # 6 Polarization: -27.63 SS G_CDS: -1.26 Total: -28.90 kcal Atomic # 7 Polarization: -47.59 SS G_CDS: 0.60 Total: -46.99 kcal Atomic # 8 Polarization: -48.85 SS G_CDS: -2.29 Total: -51.14 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Atomic # 16 Polarization: 56.56 SS G_CDS: -0.56 Total: 56.00 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -32.80 -9.57 -42.37 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192837228.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.054 kcal (2) G-P(sol) polarization free energy of solvation -32.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.371 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds