Wall clock time and date at job start Tue Mar 31 2020 14:41:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50698 * 109.47094 * 2 1 4 4 C 1.38291 * 119.94480 * 89.99924 * 3 2 1 5 5 C 1.38113 * 120.05464 * 180.02562 * 4 3 2 6 6 C 1.38756 * 119.94744 * 0.02562 * 5 4 3 7 7 O 1.35900 * 120.05458 * 179.97438 * 6 5 4 8 8 C 1.42901 * 117.00274 * 0.02562 * 7 6 5 9 9 C 1.38705 * 119.88741 * 0.02562 * 6 5 4 10 10 S 1.76199 * 120.02957 * 179.97438 * 9 6 5 11 11 O 1.42103 * 106.40461 * 181.11962 * 10 9 6 12 12 O 1.42105 * 106.40201 * 48.19975 * 10 9 6 13 13 N 1.65598 * 107.21827 * 294.66131 * 10 9 6 14 14 C 1.46498 * 119.99842 * 294.35937 * 13 10 9 15 15 H 1.09004 * 109.47444 * 25.63544 * 14 13 10 16 16 C 1.50699 * 109.47177 * 265.63093 * 14 13 10 17 17 H 1.07998 * 120.00298 * 0.02562 * 16 14 13 18 18 C 1.37885 * 120.00239 * 179.97438 * 16 14 13 19 19 N 1.31517 * 119.99561 * 0.02562 * 18 16 14 20 20 Si 1.86789 * 120.00097 * 179.97438 * 18 16 14 21 21 H 1.48501 * 109.47144 * 60.00502 * 20 18 16 22 22 H 1.48499 * 109.47328 * 180.02562 * 20 18 16 23 23 H 1.48501 * 109.47540 * 300.00552 * 20 18 16 24 24 C 1.53000 * 109.47223 * 145.63096 * 14 13 10 25 25 C 1.53002 * 109.47275 * 295.31929 * 24 14 13 26 26 C 1.38163 * 119.94600 * 0.24700 * 9 6 5 27 27 H 1.09007 * 109.46906 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.46857 * 299.99588 * 1 2 3 29 29 H 1.08997 * 109.47076 * 60.00144 * 1 2 3 30 30 H 1.08995 * 109.47157 * 240.00045 * 2 1 3 31 31 H 1.08998 * 109.47318 * 120.00339 * 2 1 3 32 32 H 1.08000 * 119.97169 * 359.97438 * 4 3 2 33 33 H 1.08006 * 120.02878 * 179.97438 * 5 4 3 34 34 H 1.08991 * 109.47497 * 300.00312 * 8 7 6 35 35 H 1.09005 * 109.46605 * 60.00384 * 8 7 6 36 36 H 1.09000 * 109.46731 * 179.97438 * 8 7 6 37 37 H 0.96996 * 120.00493 * 114.35883 * 13 10 9 38 38 H 0.97003 * 119.99808 * 179.97438 * 19 18 16 39 39 H 1.09005 * 109.47419 * 175.31544 * 24 14 13 40 40 H 1.09002 * 109.46987 * 55.32005 * 24 14 13 41 41 H 1.09003 * 109.46797 * 295.68561 * 25 24 14 42 42 H 1.08997 * 109.47043 * 175.68517 * 25 24 14 43 43 H 1.08996 * 109.46989 * 55.68396 * 25 24 14 44 44 H 1.08001 * 119.97737 * 179.74938 * 26 9 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2624 2.0716 1.1983 5 6 2.7223 3.3739 1.2009 6 6 2.9530 4.0295 0.0000 7 8 3.4050 5.3112 0.0000 8 6 3.6218 5.9226 1.2733 9 6 2.7204 3.3749 -1.2006 10 16 3.0114 4.2041 -2.7278 11 8 2.6585 3.2881 -3.7553 12 8 4.2986 4.7970 -2.6236 13 7 1.9277 5.4527 -2.8220 14 6 0.4934 5.1717 -2.9213 15 1 0.2821 4.1986 -2.4779 16 6 0.0824 5.1631 -4.3711 17 1 0.8162 5.3480 -5.1415 18 6 -1.2305 4.9182 -4.7141 19 7 -2.1241 4.6925 -3.7759 20 14 -1.7400 4.9082 -6.5111 21 1 -0.9783 3.8595 -7.2358 22 1 -3.1939 4.6233 -6.6119 23 1 -1.4530 6.2344 -7.1145 24 6 -0.2910 6.2530 -2.1752 25 6 0.0394 6.1848 -0.6829 26 6 2.2550 2.0740 -1.1979 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.8934 -0.5138 -0.8899 31 1 1.8934 -0.5139 0.8899 32 1 2.0816 1.5614 2.1328 33 1 2.9015 3.8820 2.1371 34 1 2.6857 5.9422 1.8311 35 1 4.3643 5.3502 1.8294 36 1 3.9815 6.9416 1.1304 37 1 2.2426 6.3701 -2.8113 38 1 -3.0478 4.5206 -4.0172 39 1 -1.3594 6.0911 -2.3186 40 1 -0.0169 7.2339 -2.5636 41 1 -0.3044 5.2330 -0.2778 42 1 -0.4593 7.0025 -0.1626 43 1 1.1173 6.2701 -0.5452 44 1 2.0699 1.5652 -2.1324 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192837228.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:41:50 Heat of formation + Delta-G solvation = -122.581857 kcal Electronic energy + Delta-G solvation = -27674.344674 eV Core-core repulsion = 23910.805600 eV Total energy + Delta-G solvation = -3763.539073 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.29734 -38.98464 -38.11818 -37.61495 -36.78100 -34.55047 -34.12170 -32.40464 -32.20452 -30.06993 -28.50312 -28.10186 -24.87314 -24.66695 -24.22681 -22.19931 -21.88649 -20.30837 -19.42100 -18.68911 -18.33888 -17.66408 -17.54123 -16.96870 -16.78241 -16.22368 -15.67642 -15.54227 -15.40368 -15.08953 -14.85568 -14.61804 -14.42233 -14.23154 -13.62315 -13.58203 -13.34786 -13.28128 -13.05648 -12.99573 -12.94703 -12.91239 -12.71290 -12.68826 -12.60100 -12.07283 -12.04389 -11.89073 -11.84211 -11.71992 -11.56156 -11.49864 -11.30464 -10.44757 -10.38709 -9.97679 -9.24005 -8.08497 -6.20889 -0.40637 -0.11542 0.31730 1.42047 1.44612 1.51811 2.13771 2.26624 2.45787 2.51122 2.90043 3.17404 3.47769 3.77369 3.88340 3.99085 4.19572 4.30545 4.38147 4.42523 4.48317 4.51956 4.55335 4.61894 4.68672 4.71695 4.74778 4.76496 4.88868 5.00288 5.06947 5.10427 5.15380 5.18146 5.34702 5.40041 5.43227 5.52254 5.69313 5.70774 5.81756 6.02859 6.23030 6.30715 6.49453 6.84841 7.46722 8.93646 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.011529 B = 0.005599 C = 0.004859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2428.023288 B = 4999.733496 C = 5760.817110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.077 4.077 3 C -0.144 4.144 4 C -0.019 4.019 5 C -0.222 4.222 6 C 0.213 3.787 7 O -0.329 6.329 8 C 0.012 3.988 9 C -0.715 4.715 10 S 2.702 3.298 11 O -0.997 6.997 12 O -0.993 6.993 13 N -1.093 6.093 14 C 0.293 3.707 15 H 0.015 0.985 16 C -0.543 4.543 17 H 0.048 0.952 18 C 0.022 3.978 19 N -0.909 5.909 20 Si 0.946 3.054 21 H -0.282 1.282 22 H -0.276 1.276 23 H -0.269 1.269 24 C -0.118 4.118 25 C -0.137 4.137 26 C -0.009 4.009 27 H 0.075 0.925 28 H 0.061 0.939 29 H 0.031 0.969 30 H 0.070 0.930 31 H 0.103 0.897 32 H 0.173 0.827 33 H 0.172 0.828 34 H 0.076 0.924 35 H 0.077 0.923 36 H 0.120 0.880 37 H 0.414 0.586 38 H 0.264 0.736 39 H 0.077 0.923 40 H 0.044 0.956 41 H 0.032 0.968 42 H 0.057 0.943 43 H 0.058 0.942 44 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.018 -3.366 17.022 18.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.114 4.114 3 C -0.145 4.145 4 C -0.037 4.037 5 C -0.241 4.241 6 C 0.164 3.836 7 O -0.242 6.242 8 C -0.082 4.082 9 C -0.806 4.806 10 S 2.794 3.206 11 O -0.987 6.987 12 O -0.983 6.983 13 N -0.854 5.854 14 C 0.188 3.812 15 H 0.033 0.967 16 C -0.582 4.582 17 H 0.066 0.934 18 C -0.177 4.177 19 N -0.548 5.548 20 Si 0.772 3.228 21 H -0.208 1.208 22 H -0.201 1.201 23 H -0.194 1.194 24 C -0.158 4.158 25 C -0.195 4.195 26 C -0.028 4.028 27 H 0.094 0.906 28 H 0.080 0.920 29 H 0.050 0.950 30 H 0.089 0.911 31 H 0.121 0.879 32 H 0.190 0.810 33 H 0.189 0.811 34 H 0.095 0.905 35 H 0.096 0.904 36 H 0.138 0.862 37 H 0.248 0.752 38 H 0.074 0.926 39 H 0.096 0.904 40 H 0.063 0.937 41 H 0.052 0.948 42 H 0.076 0.924 43 H 0.077 0.923 44 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 7.433 -3.655 16.256 18.244 hybrid contribution -0.646 0.291 -0.695 0.992 sum 6.788 -3.364 15.561 17.307 Atomic orbital electron populations 1.21794 0.94860 1.02516 1.01558 1.20551 0.95978 0.90623 1.04268 1.20222 1.03292 0.98637 0.92383 1.21545 0.90479 0.93029 0.98637 1.21682 1.07921 0.97421 0.97082 1.18445 0.88389 0.83717 0.93041 1.86137 1.79070 1.23414 1.35572 1.23553 1.02729 0.99510 0.82361 1.29897 1.24275 1.08155 1.18229 1.01084 0.72217 0.73121 0.74178 1.93520 1.84240 1.65412 1.55571 1.93482 1.39382 1.77584 1.87883 1.55188 1.19136 1.20690 1.90381 1.18184 0.74618 0.94280 0.94121 0.96715 1.21823 0.94302 1.48563 0.93517 0.93416 1.25519 0.96488 0.94734 1.01006 1.69935 1.02896 1.48732 1.33271 0.85807 0.77177 0.78669 0.81194 1.20831 1.20126 1.19400 1.21675 1.02631 0.97577 0.93956 1.21727 1.01276 1.00236 0.96232 1.20806 0.90756 0.91182 1.00062 0.90560 0.91965 0.95016 0.91116 0.87900 0.81002 0.81055 0.90515 0.90420 0.86173 0.75171 0.92629 0.90421 0.93714 0.94844 0.92360 0.92302 0.85358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.25 9.89 71.98 0.71 -2.54 16 2 C -0.08 -1.58 6.06 29.85 0.18 -1.40 16 3 C -0.14 -3.81 5.14 -19.85 -0.10 -3.91 16 4 C -0.02 -0.40 9.69 22.25 0.22 -0.18 16 5 C -0.22 -5.00 9.04 22.36 0.20 -4.80 16 6 C 0.21 6.57 6.63 22.51 0.15 6.72 16 7 O -0.33 -9.58 8.52 -82.76 -0.71 -10.29 16 8 C 0.01 0.20 9.81 113.37 1.11 1.31 16 9 C -0.72 -26.82 5.79 22.36 0.13 -26.69 16 10 S 2.70 119.21 5.24 -56.49 -0.30 118.91 16 11 O -1.00 -51.33 16.72 -128.00 -2.14 -53.47 16 12 O -0.99 -44.98 17.28 -122.82 -2.12 -47.11 16 13 N -1.09 -47.73 4.83 -172.52 -0.83 -48.56 16 14 C 0.29 14.60 2.15 44.25 0.10 14.70 16 15 H 0.02 0.82 7.89 -2.38 -0.02 0.80 16 16 C -0.54 -30.71 8.84 25.60 0.23 -30.48 16 17 H 0.05 2.77 7.81 -2.91 -0.02 2.75 16 18 C 0.02 1.25 5.29 84.66 0.45 1.70 16 19 N -0.91 -51.06 11.30 21.45 0.24 -50.82 16 20 Si 0.95 44.87 29.54 68.60 2.03 46.89 16 21 H -0.28 -13.68 7.11 99.48 0.71 -12.97 16 22 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 23 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 24 C -0.12 -5.32 5.37 30.59 0.16 -5.15 16 25 C -0.14 -4.94 9.85 71.98 0.71 -4.23 16 26 C -0.01 -0.30 9.20 22.26 0.20 -0.10 16 27 H 0.08 1.33 8.14 -2.38 -0.02 1.31 16 28 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 29 H 0.03 0.88 8.14 -2.39 -0.02 0.86 16 30 H 0.07 1.49 8.09 -2.39 -0.02 1.47 16 31 H 0.10 1.43 8.08 -2.39 -0.02 1.41 16 32 H 0.17 2.05 8.06 -2.91 -0.02 2.03 16 33 H 0.17 2.43 6.30 -2.91 -0.02 2.41 16 34 H 0.08 1.02 7.66 -2.39 -0.02 1.00 16 35 H 0.08 0.98 7.66 -2.38 -0.02 0.96 16 36 H 0.12 1.61 8.14 -2.39 -0.02 1.59 16 37 H 0.41 16.09 8.83 -96.75 -0.85 15.24 16 38 H 0.26 14.13 8.31 -92.71 -0.77 13.36 16 39 H 0.08 3.94 5.96 -2.38 -0.01 3.92 16 40 H 0.04 1.92 8.14 -2.39 -0.02 1.90 16 41 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 42 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 43 H 0.06 1.94 6.86 -2.39 -0.02 1.92 16 44 H 0.13 4.82 7.33 -2.91 -0.02 4.80 16 Total: -1.00 -74.71 373.33 0.77 -73.94 By element: Atomic # 1 Polarization: 25.41 SS G_CDS: 0.15 Total: 25.56 kcal Atomic # 6 Polarization: -59.50 SS G_CDS: 4.45 Total: -55.05 kcal Atomic # 7 Polarization: -98.79 SS G_CDS: -0.59 Total: -99.38 kcal Atomic # 8 Polarization: -105.90 SS G_CDS: -4.97 Total: -110.87 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 2.03 Total: 46.89 kcal Atomic # 16 Polarization: 119.21 SS G_CDS: -0.30 Total: 118.91 kcal Total: -74.71 0.77 -73.94 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192837228.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.645 kcal (2) G-P(sol) polarization free energy of solvation -74.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.937 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds