Wall clock time and date at job start Tue Mar 31 2020 14:44:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35897 * 117.00151 * 2 1 4 4 C 1.38736 * 120.05272 * 179.97438 * 3 2 1 5 5 C 1.38142 * 119.94083 * 180.02562 * 4 3 2 6 6 C 1.38267 * 120.05879 * 0.02914 * 5 4 3 7 7 C 1.50699 * 119.94639 * 179.97438 * 6 5 4 8 8 C 1.52997 * 109.47078 * 89.99560 * 7 6 5 9 9 C 1.53006 * 109.47127 * 60.00337 * 8 7 6 10 10 C 1.52997 * 109.47232 * 300.00215 * 8 7 6 11 11 C 1.52999 * 109.47317 * 179.97438 * 8 7 6 12 12 N 1.46496 * 109.47487 * 179.97438 * 11 8 7 13 13 S 1.65603 * 120.00029 * 165.00068 * 12 11 8 14 14 O 1.42100 * 106.40218 * 178.53988 * 13 12 11 15 15 O 1.42098 * 106.40402 * 311.46308 * 13 12 11 16 16 C 1.76198 * 107.21808 * 65.00385 * 13 12 11 17 17 H 1.08003 * 120.00117 * 0.02562 * 16 13 12 18 18 C 1.37881 * 120.00174 * 180.02562 * 16 13 12 19 19 N 1.31508 * 119.99893 * 179.97438 * 18 16 13 20 20 Si 1.86798 * 119.99816 * 359.97438 * 18 16 13 21 21 H 1.48501 * 109.47014 * 90.00275 * 20 18 16 22 22 H 1.48495 * 109.47150 * 210.00048 * 20 18 16 23 23 H 1.48495 * 109.47251 * 330.00019 * 20 18 16 24 24 C 1.38268 * 120.11065 * 0.24497 * 6 5 4 25 25 C 1.38150 * 120.05307 * 359.45887 * 24 6 5 26 26 H 1.09001 * 109.46788 * 299.99819 * 1 2 3 27 27 H 1.09007 * 109.47206 * 59.99696 * 1 2 3 28 28 H 1.09002 * 109.47652 * 179.97438 * 1 2 3 29 29 H 1.07999 * 120.02609 * 0.02562 * 4 3 2 30 30 H 1.08003 * 119.97374 * 180.02562 * 5 4 3 31 31 H 1.09002 * 109.46959 * 329.99649 * 7 6 5 32 32 H 1.08996 * 109.47258 * 209.99409 * 7 6 5 33 33 H 1.09001 * 109.47002 * 299.99574 * 9 8 7 34 34 H 1.08993 * 109.46955 * 60.00011 * 9 8 7 35 35 H 1.09000 * 109.47050 * 179.97438 * 9 8 7 36 36 H 1.09000 * 109.47140 * 180.02562 * 10 8 7 37 37 H 1.09001 * 109.47230 * 299.99295 * 10 8 7 38 38 H 1.09001 * 109.47375 * 60.00133 * 10 8 7 39 39 H 1.09001 * 109.47362 * 300.00732 * 11 8 7 40 40 H 1.09002 * 109.46716 * 60.00091 * 11 8 7 41 41 H 0.97000 * 120.00155 * 345.00389 * 12 11 8 42 42 H 0.97000 * 120.00001 * 180.02562 * 19 18 16 43 43 H 1.07999 * 119.97593 * 179.70929 * 24 6 5 44 44 H 1.08006 * 120.02914 * 180.25069 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 3.4314 1.2847 0.0005 5 6 4.0562 2.5167 0.0011 6 6 3.3021 3.6757 0.0017 7 6 3.9863 5.0184 0.0028 8 6 4.2183 5.4737 -1.4392 9 6 2.8739 5.5871 -2.1609 10 6 5.1001 4.4527 -2.1609 11 6 4.9124 6.8372 -1.4381 12 7 5.1352 7.2730 -2.8189 13 16 5.5224 8.8515 -3.1368 14 8 5.7053 8.9444 -4.5429 15 8 4.5873 9.6461 -2.4204 16 6 7.0973 9.1589 -2.4089 17 1 7.6103 8.3703 -1.8785 18 6 7.6748 10.4063 -2.5164 19 7 8.8500 10.6358 -1.9727 20 14 6.7879 11.7701 -3.4345 21 1 5.9262 12.5242 -2.4889 22 1 7.7850 12.6907 -4.0373 23 1 5.9475 11.1797 -4.5069 24 6 1.9212 3.6047 0.0069 25 6 1.2916 2.3751 0.0002 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 4.0208 0.3797 0.0005 30 1 5.1346 2.5748 0.0011 31 1 4.9440 4.9376 0.5170 32 1 3.3581 5.7458 0.5169 33 1 2.3790 4.6159 -2.1618 34 1 2.2459 6.3145 -1.6468 35 1 3.0392 5.9120 -3.1882 36 1 5.2657 4.7773 -3.1881 37 1 6.0579 4.3720 -1.6469 38 1 4.6052 3.4815 -2.1618 39 1 4.2839 7.5645 -0.9241 40 1 5.8701 6.7569 -0.9239 41 1 5.0559 6.6370 -3.5470 42 1 9.2562 11.5135 -2.0481 43 1 1.3344 4.5113 0.0121 44 1 0.2129 2.3201 0.0001 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001193001087.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:44:26 Heat of formation + Delta-G solvation = -107.715232 kcal Electronic energy + Delta-G solvation = -25938.341804 eV Core-core repulsion = 22175.447395 eV Total energy + Delta-G solvation = -3762.894408 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.47904 -38.83344 -36.93344 -35.55317 -34.37904 -33.14633 -32.95652 -31.32809 -30.35393 -27.97414 -27.13723 -26.61820 -26.33057 -24.84694 -22.73012 -21.39574 -19.21215 -18.79979 -18.23952 -17.47157 -16.64154 -16.44036 -16.03255 -15.94888 -15.31901 -14.91190 -14.70266 -14.36331 -14.17293 -13.97512 -13.74569 -13.59171 -13.35567 -13.16490 -12.89694 -12.71658 -12.46687 -12.26405 -11.76262 -11.73236 -11.59734 -11.55310 -11.36643 -11.29051 -10.92518 -10.86264 -10.63791 -10.62560 -10.56518 -10.45119 -10.31802 -9.79042 -9.18663 -9.17306 -9.12719 -8.49520 -8.20249 -6.77906 -5.30844 1.18322 1.26279 2.14505 3.02233 3.09204 3.19711 3.29209 3.58469 3.97630 4.40271 4.56300 4.61743 4.65863 4.69643 4.78744 4.81292 4.93608 5.00326 5.11641 5.14072 5.22608 5.25328 5.38829 5.46306 5.56031 5.64953 5.80612 5.82742 5.90151 5.94828 5.99301 6.06915 6.10805 6.16279 6.19706 6.27132 6.28204 6.41321 6.43949 6.59125 6.60631 6.71914 7.16913 7.50413 7.80403 8.23922 8.73731 10.34486 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.034171 B = 0.002573 C = 0.002510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 819.215240 B =10879.059118 C =11152.474668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.321 6.321 3 C 0.116 3.884 4 C -0.152 4.152 5 C -0.075 4.075 6 C -0.103 4.103 7 C -0.071 4.071 8 C -0.065 4.065 9 C -0.144 4.144 10 C -0.145 4.145 11 C 0.136 3.864 12 N -1.122 6.122 13 S 2.677 3.323 14 O -1.011 7.011 15 O -1.013 7.013 16 C -1.014 5.014 17 H 0.121 0.879 18 C 0.152 3.848 19 N -0.825 5.825 20 Si 0.803 3.197 21 H -0.247 1.247 22 H -0.256 1.256 23 H -0.220 1.220 24 C -0.075 4.075 25 C -0.208 4.208 26 H 0.054 0.946 27 H 0.054 0.946 28 H 0.098 0.902 29 H 0.127 0.873 30 H 0.130 0.870 31 H 0.077 0.923 32 H 0.076 0.924 33 H 0.056 0.944 34 H 0.056 0.944 35 H 0.057 0.943 36 H 0.057 0.943 37 H 0.058 0.942 38 H 0.058 0.942 39 H 0.076 0.924 40 H 0.064 0.936 41 H 0.404 0.596 42 H 0.280 0.720 43 H 0.125 0.875 44 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.711 -18.827 5.436 23.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.235 6.235 3 C 0.071 3.929 4 C -0.170 4.170 5 C -0.093 4.093 6 C -0.103 4.103 7 C -0.108 4.108 8 C -0.066 4.066 9 C -0.201 4.201 10 C -0.203 4.203 11 C 0.009 3.991 12 N -0.879 5.879 13 S 2.778 3.222 14 O -1.002 7.002 15 O -1.003 7.003 16 C -1.148 5.148 17 H 0.139 0.861 18 C -0.067 4.067 19 N -0.454 5.454 20 Si 0.623 3.377 21 H -0.171 1.171 22 H -0.180 1.180 23 H -0.142 1.142 24 C -0.093 4.093 25 C -0.227 4.227 26 H 0.073 0.927 27 H 0.073 0.927 28 H 0.116 0.884 29 H 0.145 0.855 30 H 0.148 0.852 31 H 0.096 0.904 32 H 0.095 0.905 33 H 0.075 0.925 34 H 0.076 0.924 35 H 0.076 0.924 36 H 0.076 0.924 37 H 0.077 0.923 38 H 0.077 0.923 39 H 0.094 0.906 40 H 0.082 0.918 41 H 0.237 0.763 42 H 0.090 0.910 43 H 0.143 0.857 44 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -14.019 -18.179 5.151 23.528 hybrid contribution 0.136 0.333 -0.259 0.443 sum -13.883 -17.846 4.893 23.134 Atomic orbital electron populations 1.23027 0.78564 1.03756 1.01340 1.86053 1.21250 1.27218 1.88965 1.19026 0.92404 0.84025 0.97418 1.20409 0.91295 0.98664 1.06664 1.20926 1.00000 0.90885 0.97485 1.19763 0.93391 0.95282 1.01859 1.20630 1.00856 0.93111 0.96253 1.20691 0.96135 0.95016 0.94788 1.21943 0.96004 1.01423 1.00759 1.21961 0.99346 0.98388 1.00572 1.21154 0.99943 0.94927 0.83101 1.55474 1.89057 1.30441 1.12961 1.01260 0.76495 0.70794 0.73609 1.93471 1.88393 1.84993 1.33299 1.93397 1.65364 1.66867 1.74647 1.30478 1.26013 1.06502 1.51855 0.86112 1.24436 0.93615 0.97441 0.91205 1.69990 1.14186 1.23747 1.37471 0.87850 0.82273 0.84594 0.83016 1.17074 1.18030 1.14230 1.20893 0.94131 0.96951 0.97325 1.21200 0.99836 0.92412 1.09207 0.92729 0.92694 0.88408 0.85458 0.85202 0.90400 0.90509 0.92481 0.92446 0.92355 0.92395 0.92256 0.92288 0.90590 0.91780 0.76315 0.90977 0.85691 0.85764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 22. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 9.81 101.05 0.99 1.16 16 2 O -0.32 -3.15 10.50 -19.42 -0.20 -3.35 16 3 C 0.12 1.20 6.69 -39.22 -0.26 0.93 16 4 C -0.15 -1.52 9.99 -39.43 -0.39 -1.92 16 5 C -0.07 -0.73 7.87 -39.61 -0.31 -1.04 16 6 C -0.10 -1.03 4.00 -104.60 -0.42 -1.45 16 7 C -0.07 -0.74 4.46 -27.88 -0.12 -0.86 16 8 C -0.06 -0.79 0.56 -154.51 -0.09 -0.88 16 9 C -0.14 -1.72 7.72 37.16 0.29 -1.43 16 10 C -0.15 -1.67 7.71 37.16 0.29 -1.39 16 11 C 0.14 2.15 5.11 -4.04 -0.02 2.13 16 12 N -1.12 -20.73 5.33 -10.62 -0.06 -20.78 16 13 S 2.68 65.84 4.24 -107.50 -0.46 65.38 16 14 O -1.01 -27.04 16.02 -57.17 -0.92 -27.96 16 15 O -1.01 -26.66 16.30 -57.17 -0.93 -27.59 16 16 C -1.01 -28.02 10.26 30.60 0.31 -27.70 16 17 H 0.12 3.35 8.06 -52.48 -0.42 2.93 16 18 C 0.15 4.38 5.47 -17.82 -0.10 4.28 16 19 N -0.82 -23.83 13.96 55.43 0.77 -23.06 16 20 Si 0.80 20.69 26.54 -169.99 -4.51 16.18 16 21 H -0.25 -6.22 7.11 56.52 0.40 -5.82 16 22 H -0.26 -6.08 7.11 56.52 0.40 -5.68 16 23 H -0.22 -5.79 5.61 56.52 0.32 -5.47 16 24 C -0.07 -0.73 7.89 -39.60 -0.31 -1.04 16 25 C -0.21 -1.96 9.04 -39.43 -0.36 -2.31 16 26 H 0.05 0.28 7.66 -51.93 -0.40 -0.12 16 27 H 0.05 0.29 7.66 -51.93 -0.40 -0.11 16 28 H 0.10 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.13 1.12 8.06 -52.49 -0.42 0.70 16 30 H 0.13 1.10 8.02 -52.48 -0.42 0.67 16 31 H 0.08 0.77 8.08 -51.93 -0.42 0.35 16 32 H 0.08 0.77 8.08 -51.93 -0.42 0.35 16 33 H 0.06 0.62 6.19 -51.93 -0.32 0.30 16 34 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 35 H 0.06 0.74 7.20 -51.93 -0.37 0.36 16 36 H 0.06 0.69 6.60 -51.93 -0.34 0.35 16 37 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.06 0.62 6.17 -51.93 -0.32 0.30 16 39 H 0.08 1.25 7.75 -51.93 -0.40 0.84 16 40 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 41 H 0.40 6.52 6.47 -34.47 -0.22 6.29 16 42 H 0.28 7.35 8.31 -40.82 -0.34 7.01 16 43 H 0.13 1.07 8.04 -52.49 -0.42 0.65 16 44 H 0.12 0.92 6.30 -52.48 -0.33 0.59 16 LS Contribution 360.51 15.07 5.43 5.43 Total: -1.00 -33.79 360.51 -7.92 -41.72 By element: Atomic # 1 Polarization: 12.11 SS G_CDS: -6.55 Total: 5.56 kcal Atomic # 6 Polarization: -31.02 SS G_CDS: -0.51 Total: -31.53 kcal Atomic # 7 Polarization: -44.56 SS G_CDS: 0.72 Total: -43.84 kcal Atomic # 8 Polarization: -56.85 SS G_CDS: -2.05 Total: -58.90 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -4.51 Total: 16.18 kcal Atomic # 16 Polarization: 65.84 SS G_CDS: -0.46 Total: 65.38 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -33.79 -7.92 -41.72 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001193001087.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.997 kcal (2) G-P(sol) polarization free energy of solvation -33.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.718 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds