Wall clock time and date at job start Tue Mar 31 2020 14:44:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35897 * 117.00151 * 2 1 4 4 C 1.38736 * 120.05272 * 179.97438 * 3 2 1 5 5 C 1.38142 * 119.94083 * 180.02562 * 4 3 2 6 6 C 1.38267 * 120.05879 * 0.02914 * 5 4 3 7 7 C 1.50699 * 119.94639 * 179.97438 * 6 5 4 8 8 C 1.52997 * 109.47078 * 89.99560 * 7 6 5 9 9 C 1.53006 * 109.47127 * 60.00337 * 8 7 6 10 10 C 1.52997 * 109.47232 * 300.00215 * 8 7 6 11 11 C 1.52999 * 109.47317 * 179.97438 * 8 7 6 12 12 N 1.46496 * 109.47487 * 179.97438 * 11 8 7 13 13 S 1.65603 * 120.00029 * 165.00068 * 12 11 8 14 14 O 1.42100 * 106.40218 * 178.53988 * 13 12 11 15 15 O 1.42098 * 106.40402 * 311.46308 * 13 12 11 16 16 C 1.76198 * 107.21808 * 65.00385 * 13 12 11 17 17 H 1.08003 * 120.00117 * 0.02562 * 16 13 12 18 18 C 1.37881 * 120.00174 * 180.02562 * 16 13 12 19 19 N 1.31508 * 119.99893 * 179.97438 * 18 16 13 20 20 Si 1.86798 * 119.99816 * 359.97438 * 18 16 13 21 21 H 1.48501 * 109.47014 * 90.00275 * 20 18 16 22 22 H 1.48495 * 109.47150 * 210.00048 * 20 18 16 23 23 H 1.48495 * 109.47251 * 330.00019 * 20 18 16 24 24 C 1.38268 * 120.11065 * 0.24497 * 6 5 4 25 25 C 1.38150 * 120.05307 * 359.45887 * 24 6 5 26 26 H 1.09001 * 109.46788 * 299.99819 * 1 2 3 27 27 H 1.09007 * 109.47206 * 59.99696 * 1 2 3 28 28 H 1.09002 * 109.47652 * 179.97438 * 1 2 3 29 29 H 1.07999 * 120.02609 * 0.02562 * 4 3 2 30 30 H 1.08003 * 119.97374 * 180.02562 * 5 4 3 31 31 H 1.09002 * 109.46959 * 329.99649 * 7 6 5 32 32 H 1.08996 * 109.47258 * 209.99409 * 7 6 5 33 33 H 1.09001 * 109.47002 * 299.99574 * 9 8 7 34 34 H 1.08993 * 109.46955 * 60.00011 * 9 8 7 35 35 H 1.09000 * 109.47050 * 179.97438 * 9 8 7 36 36 H 1.09000 * 109.47140 * 180.02562 * 10 8 7 37 37 H 1.09001 * 109.47230 * 299.99295 * 10 8 7 38 38 H 1.09001 * 109.47375 * 60.00133 * 10 8 7 39 39 H 1.09001 * 109.47362 * 300.00732 * 11 8 7 40 40 H 1.09002 * 109.46716 * 60.00091 * 11 8 7 41 41 H 0.97000 * 120.00155 * 345.00389 * 12 11 8 42 42 H 0.97000 * 120.00001 * 180.02562 * 19 18 16 43 43 H 1.07999 * 119.97593 * 179.70929 * 24 6 5 44 44 H 1.08006 * 120.02914 * 180.25069 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 3.4314 1.2847 0.0005 5 6 4.0562 2.5167 0.0011 6 6 3.3021 3.6757 0.0017 7 6 3.9863 5.0184 0.0028 8 6 4.2183 5.4737 -1.4392 9 6 2.8739 5.5871 -2.1609 10 6 5.1001 4.4527 -2.1609 11 6 4.9124 6.8372 -1.4381 12 7 5.1352 7.2730 -2.8189 13 16 5.5224 8.8515 -3.1368 14 8 5.7053 8.9444 -4.5429 15 8 4.5873 9.6461 -2.4204 16 6 7.0973 9.1589 -2.4089 17 1 7.6103 8.3703 -1.8785 18 6 7.6748 10.4063 -2.5164 19 7 8.8500 10.6358 -1.9727 20 14 6.7879 11.7701 -3.4345 21 1 5.9262 12.5242 -2.4889 22 1 7.7850 12.6907 -4.0373 23 1 5.9475 11.1797 -4.5069 24 6 1.9212 3.6047 0.0069 25 6 1.2916 2.3751 0.0002 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 4.0208 0.3797 0.0005 30 1 5.1346 2.5748 0.0011 31 1 4.9440 4.9376 0.5170 32 1 3.3581 5.7458 0.5169 33 1 2.3790 4.6159 -2.1618 34 1 2.2459 6.3145 -1.6468 35 1 3.0392 5.9120 -3.1882 36 1 5.2657 4.7773 -3.1881 37 1 6.0579 4.3720 -1.6469 38 1 4.6052 3.4815 -2.1618 39 1 4.2839 7.5645 -0.9241 40 1 5.8701 6.7569 -0.9239 41 1 5.0559 6.6370 -3.5470 42 1 9.2562 11.5135 -2.0481 43 1 1.3344 4.5113 0.0121 44 1 0.2129 2.3201 0.0001 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001193001087.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:44:24 Heat of formation + Delta-G solvation = -131.388450 kcal Electronic energy + Delta-G solvation = -25939.368351 eV Core-core repulsion = 22175.447395 eV Total energy + Delta-G solvation = -3763.920956 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -41.19702 -39.69440 -37.88257 -37.56743 -36.44586 -35.16777 -34.35111 -32.03710 -31.22863 -28.58869 -28.54083 -28.04284 -27.48481 -25.93805 -23.43390 -22.17107 -21.09344 -19.88078 -19.42917 -18.95303 -18.54145 -17.42115 -17.11271 -16.89337 -16.59948 -16.20970 -15.82189 -15.52964 -15.47009 -15.20274 -15.02135 -14.90841 -14.61909 -14.38441 -14.20518 -13.66490 -13.54302 -13.40797 -13.21230 -12.88945 -12.82911 -12.69965 -12.63872 -12.55659 -12.51317 -12.36981 -12.06352 -11.86879 -11.64711 -11.55903 -11.47190 -11.34551 -11.30944 -11.16038 -10.13743 -9.84351 -8.94123 -8.93652 -7.48689 0.20558 0.47160 0.52888 1.06476 1.15712 1.23304 1.90793 2.44388 2.44663 2.64359 2.85972 3.36121 3.70836 3.87250 3.98645 4.01930 4.05971 4.24063 4.31012 4.32883 4.40786 4.50175 4.52872 4.59197 4.65795 4.70928 4.76591 4.82086 4.91987 4.94397 4.96889 5.10069 5.11255 5.20487 5.24732 5.29445 5.41048 5.42790 5.49225 5.51097 5.51562 5.82851 5.91900 6.05111 6.36212 6.51355 6.57167 8.23358 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.034171 B = 0.002573 C = 0.002510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 819.215240 B =10879.059118 C =11152.474668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.339 6.339 3 C 0.105 3.895 4 C -0.165 4.165 5 C -0.077 4.077 6 C -0.110 4.110 7 C -0.067 4.067 8 C -0.055 4.055 9 C -0.145 4.145 10 C -0.146 4.146 11 C 0.125 3.875 12 N -1.106 6.106 13 S 2.700 3.300 14 O -1.033 7.033 15 O -1.030 7.030 16 C -1.034 5.034 17 H 0.108 0.892 18 C 0.107 3.893 19 N -0.855 5.855 20 Si 0.825 3.175 21 H -0.239 1.239 22 H -0.223 1.223 23 H -0.229 1.229 24 C -0.080 4.080 25 C -0.211 4.211 26 H 0.063 0.937 27 H 0.061 0.939 28 H 0.116 0.884 29 H 0.133 0.867 30 H 0.140 0.860 31 H 0.083 0.917 32 H 0.081 0.919 33 H 0.070 0.930 34 H 0.057 0.943 35 H 0.048 0.952 36 H 0.051 0.949 37 H 0.061 0.939 38 H 0.070 0.930 39 H 0.070 0.930 40 H 0.064 0.936 41 H 0.417 0.583 42 H 0.290 0.710 43 H 0.136 0.864 44 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.039 -19.646 5.495 25.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.253 6.253 3 C 0.060 3.940 4 C -0.183 4.183 5 C -0.095 4.095 6 C -0.110 4.110 7 C -0.105 4.105 8 C -0.057 4.057 9 C -0.202 4.202 10 C -0.203 4.203 11 C -0.001 4.001 12 N -0.868 5.868 13 S 2.799 3.201 14 O -1.023 7.023 15 O -1.019 7.019 16 C -1.167 5.167 17 H 0.126 0.874 18 C -0.109 4.109 19 N -0.485 5.485 20 Si 0.642 3.358 21 H -0.163 1.163 22 H -0.145 1.145 23 H -0.152 1.152 24 C -0.098 4.098 25 C -0.229 4.229 26 H 0.081 0.919 27 H 0.080 0.920 28 H 0.134 0.866 29 H 0.151 0.849 30 H 0.158 0.842 31 H 0.101 0.899 32 H 0.100 0.900 33 H 0.089 0.911 34 H 0.077 0.923 35 H 0.068 0.932 36 H 0.070 0.930 37 H 0.080 0.920 38 H 0.089 0.911 39 H 0.089 0.911 40 H 0.082 0.918 41 H 0.253 0.747 42 H 0.101 0.899 43 H 0.153 0.847 44 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -15.324 -18.991 5.211 24.953 hybrid contribution 0.503 0.445 -0.220 0.707 sum -14.821 -18.546 4.992 24.259 Atomic orbital electron populations 1.23290 0.76756 1.05340 1.02070 1.86030 1.23223 1.27182 1.88913 1.19240 0.92747 0.84573 0.97415 1.20603 0.91660 0.99106 1.06976 1.21063 1.00591 0.90719 0.97168 1.19734 0.93663 0.94934 1.02685 1.20583 1.01424 0.93572 0.94909 1.20613 0.95940 0.92833 0.96323 1.21961 0.95907 1.02226 1.00113 1.21975 0.99541 0.98709 1.00079 1.21437 1.00439 0.96993 0.81195 1.54987 1.88289 1.28683 1.14833 1.00411 0.75089 0.72057 0.72522 1.93432 1.88443 1.86144 1.34299 1.93370 1.65056 1.68592 1.74923 1.30986 1.27709 1.06218 1.51738 0.87399 1.25166 0.94372 0.99386 0.92015 1.70013 1.15052 1.24970 1.38473 0.87489 0.82472 0.83500 0.82306 1.16270 1.14500 1.15199 1.21077 0.94144 0.97540 0.97033 1.21410 1.00832 0.92001 1.08701 0.91877 0.92004 0.86552 0.84866 0.84212 0.89878 0.90049 0.91120 0.92350 0.93242 0.93005 0.91957 0.91095 0.91146 0.91807 0.74686 0.89949 0.84654 0.83998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.20 9.81 113.37 1.11 1.31 16 2 O -0.34 -6.19 10.50 -92.39 -0.97 -7.16 16 3 C 0.11 2.02 6.69 22.51 0.15 2.17 16 4 C -0.16 -3.11 9.99 22.37 0.22 -2.88 16 5 C -0.08 -1.39 7.87 22.25 0.18 -1.21 16 6 C -0.11 -2.01 4.00 -19.85 -0.08 -2.09 16 7 C -0.07 -1.28 4.46 29.85 0.13 -1.15 16 8 C -0.06 -1.26 0.56 -52.18 -0.03 -1.29 16 9 C -0.14 -3.20 7.72 71.98 0.56 -2.65 16 10 C -0.15 -3.12 7.71 71.98 0.55 -2.56 16 11 C 0.13 3.86 5.11 86.38 0.44 4.30 16 12 N -1.11 -39.99 5.33 -187.50 -1.00 -40.99 16 13 S 2.70 131.69 4.24 -56.49 -0.24 131.45 16 14 O -1.03 -54.68 16.02 -128.00 -2.05 -56.73 16 15 O -1.03 -53.57 16.30 -128.00 -2.09 -55.66 16 16 C -1.03 -57.50 10.26 67.74 0.69 -56.81 16 17 H 0.11 6.09 8.06 -2.91 -0.02 6.07 16 18 C 0.11 6.15 5.47 84.66 0.46 6.61 16 19 N -0.85 -49.48 13.96 21.45 0.30 -49.19 16 20 Si 0.83 41.26 26.54 68.60 1.82 43.08 16 21 H -0.24 -11.59 7.11 99.48 0.71 -10.88 16 22 H -0.22 -9.87 7.11 99.48 0.71 -9.16 16 23 H -0.23 -11.80 5.61 99.48 0.56 -11.24 16 24 C -0.08 -1.38 7.89 22.26 0.18 -1.21 16 25 C -0.21 -3.56 9.04 22.37 0.20 -3.36 16 26 H 0.06 0.52 7.66 -2.39 -0.02 0.50 16 27 H 0.06 0.53 7.66 -2.38 -0.02 0.51 16 28 H 0.12 0.69 8.14 -2.39 -0.02 0.67 16 29 H 0.13 2.23 8.06 -2.91 -0.02 2.21 16 30 H 0.14 2.12 8.02 -2.91 -0.02 2.10 16 31 H 0.08 1.50 8.08 -2.39 -0.02 1.48 16 32 H 0.08 1.48 8.08 -2.39 -0.02 1.46 16 33 H 0.07 1.37 6.19 -2.39 -0.01 1.36 16 34 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 35 H 0.05 1.17 7.20 -2.39 -0.02 1.15 16 36 H 0.05 1.16 6.60 -2.39 -0.02 1.14 16 37 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 38 H 0.07 1.36 6.17 -2.39 -0.01 1.35 16 39 H 0.07 2.26 7.75 -2.39 -0.02 2.24 16 40 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 41 H 0.42 13.00 6.47 -96.75 -0.63 12.38 16 42 H 0.29 15.16 8.31 -92.71 -0.77 14.39 16 43 H 0.14 2.01 8.04 -2.91 -0.02 1.98 16 44 H 0.14 1.78 6.30 -2.91 -0.02 1.76 16 Total: -1.00 -70.84 360.51 0.78 -70.06 By element: Atomic # 1 Polarization: 25.71 SS G_CDS: 0.23 Total: 25.94 kcal Atomic # 6 Polarization: -65.59 SS G_CDS: 4.77 Total: -60.81 kcal Atomic # 7 Polarization: -89.47 SS G_CDS: -0.70 Total: -90.17 kcal Atomic # 8 Polarization: -114.44 SS G_CDS: -5.11 Total: -119.55 kcal Atomic # 14 Polarization: 41.26 SS G_CDS: 1.82 Total: 43.08 kcal Atomic # 16 Polarization: 131.69 SS G_CDS: -0.24 Total: 131.45 kcal Total: -70.84 0.78 -70.06 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001193001087.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.324 kcal (2) G-P(sol) polarization free energy of solvation -70.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.064 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds