Wall clock time and date at job start Tue Mar 31 2020 14:44:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35905 * 116.99604 * 2 1 4 4 C 1.38745 * 120.05685 * 359.72933 * 3 2 1 5 5 C 1.38130 * 119.94480 * 179.69913 * 4 3 2 6 6 C 1.38291 * 120.05012 * 0.59399 * 5 4 3 7 7 C 1.38246 * 120.11190 * 359.67962 * 6 5 4 8 8 C 1.50703 * 119.97077 * 179.97438 * 7 6 5 9 9 C 1.52997 * 109.46906 * 270.02263 * 8 7 6 10 10 C 1.52999 * 109.47092 * 299.99906 * 9 8 7 11 11 C 1.52999 * 109.47389 * 60.00366 * 9 8 7 12 12 C 1.53008 * 109.46974 * 180.02562 * 9 8 7 13 13 N 1.46495 * 109.47167 * 179.97438 * 12 9 8 14 14 S 1.65601 * 120.00181 * 164.99784 * 13 12 9 15 15 O 1.42102 * 106.40536 * 178.54011 * 14 13 12 16 16 O 1.42107 * 106.40051 * 311.46184 * 14 13 12 17 17 C 1.76202 * 107.21614 * 65.00024 * 14 13 12 18 18 H 1.08003 * 119.99763 * 0.02562 * 17 14 13 19 19 C 1.37875 * 120.00034 * 180.02562 * 17 14 13 20 20 N 1.31515 * 120.00036 * 359.97438 * 19 17 14 21 21 Si 1.86801 * 120.00150 * 179.97438 * 19 17 14 22 22 H 1.48503 * 109.46877 * 90.00065 * 21 19 17 23 23 H 1.48494 * 109.47182 * 209.99713 * 21 19 17 24 24 H 1.48501 * 109.47121 * 330.00148 * 21 19 17 25 25 C 1.38159 * 120.05555 * 0.02562 * 7 6 5 26 26 H 1.08996 * 109.47352 * 299.99771 * 1 2 3 27 27 H 1.08999 * 109.47144 * 59.99795 * 1 2 3 28 28 H 1.08995 * 109.47253 * 179.97438 * 1 2 3 29 29 H 1.07997 * 120.03176 * 359.97124 * 4 3 2 30 30 H 1.07997 * 119.97739 * 180.29791 * 5 4 3 31 31 H 1.08001 * 119.94552 * 179.70178 * 6 5 4 32 32 H 1.09002 * 109.47303 * 30.02167 * 8 7 6 33 33 H 1.09000 * 109.47206 * 150.02292 * 8 7 6 34 34 H 1.08994 * 109.47064 * 60.00515 * 10 9 8 35 35 H 1.09006 * 109.47070 * 180.02562 * 10 9 8 36 36 H 1.09000 * 109.47195 * 300.00078 * 10 9 8 37 37 H 1.08993 * 109.47144 * 59.99586 * 11 9 8 38 38 H 1.09006 * 109.47175 * 179.97438 * 11 9 8 39 39 H 1.08999 * 109.46673 * 299.99423 * 11 9 8 40 40 H 1.09003 * 109.46674 * 299.99730 * 12 9 8 41 41 H 1.08993 * 109.46916 * 59.99804 * 12 9 8 42 42 H 0.97005 * 120.00019 * 345.00526 * 13 12 9 43 43 H 0.96997 * 120.00096 * 179.97438 * 20 19 17 44 44 H 1.08006 * 120.02917 * 180.02562 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2110 0.0000 4 6 1.2914 2.3753 -0.0057 5 6 1.9207 3.6048 0.0006 6 6 3.3018 3.6759 0.0002 7 6 4.0559 2.5172 0.0001 8 6 5.5607 2.5983 -0.0010 9 6 6.0689 2.6257 -1.4438 10 6 5.6263 1.3508 -2.1647 11 6 5.4920 3.8457 -2.1647 12 6 7.5968 2.7074 -1.4450 13 7 8.0834 2.7331 -2.8265 14 16 9.6432 3.1882 -3.1467 15 8 9.8131 3.0768 -4.5531 16 8 9.8640 4.3954 -2.4303 17 6 10.6988 1.9786 -2.4206 18 1 10.2737 1.1396 -1.8897 19 6 12.0676 2.1031 -2.5303 20 7 12.5852 3.1245 -3.1772 21 14 13.1868 0.8212 -1.7599 22 1 13.4554 -0.2574 -2.7448 23 1 14.4678 1.4578 -1.3614 24 1 12.5269 0.2440 -0.5613 25 6 3.4311 1.2849 -0.0001 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 0.2128 2.3203 -0.0106 30 1 1.3339 4.5114 0.0011 31 1 3.7922 4.6381 0.0002 32 1 5.8760 3.5065 0.5126 33 1 5.9718 1.7291 0.5125 34 1 4.5380 1.2922 -2.1640 35 1 5.9888 1.3702 -3.1926 36 1 6.0374 0.4817 -1.6512 37 1 5.8072 4.7539 -1.6511 38 1 5.8544 3.8655 -3.1925 39 1 4.4035 3.7870 -2.1639 40 1 7.9124 3.6155 -0.9312 41 1 8.0074 1.8381 -0.9316 42 1 7.4920 2.4836 -3.5538 43 1 13.5481 3.2123 -3.2540 44 1 4.0206 0.3800 0.0003 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001193001297.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:44:30 Heat of formation + Delta-G solvation = -121.976330 kcal Electronic energy + Delta-G solvation = -25979.687830 eV Core-core repulsion = 22216.175014 eV Total energy + Delta-G solvation = -3763.512816 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.47838 -38.74216 -36.92956 -35.11513 -33.87805 -33.24818 -32.93693 -31.05001 -30.29784 -27.74166 -27.05825 -26.81282 -26.07270 -24.97587 -22.61140 -21.33244 -19.12132 -18.78706 -17.72752 -17.36226 -16.44382 -16.21756 -16.12703 -15.97359 -15.48767 -14.87801 -14.64341 -14.34574 -14.07240 -13.96927 -13.73382 -13.51930 -13.11481 -13.06798 -12.66403 -12.49909 -12.21713 -11.96357 -11.81532 -11.66532 -11.45927 -11.32939 -11.20278 -11.17470 -11.05324 -10.76117 -10.64074 -10.59807 -10.55132 -10.22002 -10.12123 -10.02697 -9.20832 -8.93738 -8.88812 -8.39066 -8.32777 -6.65757 -5.26873 1.17048 1.30973 2.42742 3.03181 3.09357 3.16227 3.22584 3.60326 4.10170 4.56357 4.59739 4.68753 4.79992 4.81227 4.82529 4.85750 4.93535 5.09317 5.13075 5.16830 5.22912 5.34149 5.39715 5.59202 5.67591 5.79744 5.86692 5.88412 5.94678 6.03044 6.04721 6.11663 6.19615 6.23587 6.28777 6.32650 6.45674 6.48045 6.55673 6.62894 6.64946 6.94185 7.19996 7.36720 7.97818 8.04492 8.93705 10.28284 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.022800 B = 0.002741 C = 0.002603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1227.758230 B =10212.514330 C =10755.389796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.319 6.319 3 C 0.124 3.876 4 C -0.217 4.217 5 C -0.082 4.082 6 C -0.150 4.150 7 C -0.027 4.027 8 C -0.076 4.076 9 C -0.064 4.064 10 C -0.145 4.145 11 C -0.144 4.144 12 C 0.138 3.862 13 N -1.135 6.135 14 S 2.717 3.283 15 O -1.009 7.009 16 O -1.008 7.008 17 C -1.019 5.019 18 H 0.101 0.899 19 C 0.132 3.868 20 N -0.846 5.846 21 Si 0.919 3.081 22 H -0.268 1.268 23 H -0.276 1.276 24 H -0.263 1.263 25 C -0.146 4.146 26 H 0.053 0.947 27 H 0.054 0.946 28 H 0.098 0.902 29 H 0.123 0.877 30 H 0.122 0.878 31 H 0.125 0.875 32 H 0.081 0.919 33 H 0.079 0.921 34 H 0.058 0.942 35 H 0.058 0.942 36 H 0.057 0.943 37 H 0.057 0.943 38 H 0.059 0.941 39 H 0.056 0.944 40 H 0.075 0.925 41 H 0.060 0.940 42 H 0.400 0.600 43 H 0.290 0.710 44 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.720 -3.602 8.095 24.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.233 6.233 3 C 0.079 3.921 4 C -0.236 4.236 5 C -0.100 4.100 6 C -0.169 4.169 7 C -0.028 4.028 8 C -0.114 4.114 9 C -0.066 4.066 10 C -0.203 4.203 11 C -0.202 4.202 12 C 0.010 3.990 13 N -0.890 5.890 14 S 2.816 3.184 15 O -1.000 7.000 16 O -0.998 6.998 17 C -1.153 5.153 18 H 0.120 0.880 19 C -0.085 4.085 20 N -0.476 5.476 21 Si 0.744 3.256 22 H -0.193 1.193 23 H -0.201 1.201 24 H -0.187 1.187 25 C -0.165 4.165 26 H 0.072 0.928 27 H 0.073 0.927 28 H 0.116 0.884 29 H 0.141 0.859 30 H 0.140 0.860 31 H 0.143 0.857 32 H 0.099 0.901 33 H 0.098 0.902 34 H 0.077 0.923 35 H 0.077 0.923 36 H 0.076 0.924 37 H 0.076 0.924 38 H 0.078 0.922 39 H 0.075 0.925 40 H 0.093 0.907 41 H 0.078 0.922 42 H 0.232 0.768 43 H 0.100 0.900 44 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -22.123 -2.840 7.693 23.594 hybrid contribution 0.138 -1.204 0.384 1.271 sum -21.986 -4.044 8.078 23.769 Atomic orbital electron populations 1.23021 0.78613 1.03786 1.01225 1.86077 1.21194 1.27135 1.88848 1.19014 0.92343 0.84024 0.96744 1.21166 0.99744 0.92529 1.10131 1.20903 0.94655 0.96821 0.97596 1.21033 0.93551 0.98334 1.03948 1.19647 0.95812 0.91949 0.95352 1.20732 0.90111 1.03749 0.96784 1.20681 0.95048 0.96556 0.94273 1.21965 1.01076 0.96580 1.00643 1.21948 1.00328 0.97000 1.00886 1.21076 0.92256 1.01939 0.83681 1.55969 1.32748 1.87898 1.12433 1.00312 0.70324 0.74608 0.73110 1.93370 1.84767 1.88337 1.33504 1.93352 1.84232 1.47388 1.74828 1.30570 1.04522 1.28367 1.51804 0.88023 1.24740 0.97795 0.95012 0.90970 1.69900 1.15320 1.27483 1.34905 0.86184 0.78873 0.80627 0.79964 1.19289 1.20058 1.18687 1.20350 0.91094 0.98452 1.06593 0.92792 0.92747 0.88373 0.85917 0.86014 0.85699 0.90066 0.90240 0.92348 0.92297 0.92371 0.92361 0.92241 0.92459 0.90699 0.92215 0.76750 0.89974 0.85167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 9.81 101.05 0.99 1.17 16 2 O -0.32 -3.29 10.50 -19.44 -0.20 -3.49 16 3 C 0.12 1.33 6.69 -39.22 -0.26 1.07 16 4 C -0.22 -2.03 9.04 -39.43 -0.36 -2.39 16 5 C -0.08 -0.75 10.04 -39.60 -0.40 -1.14 16 6 C -0.15 -1.50 7.88 -39.56 -0.31 -1.81 16 7 C -0.03 -0.29 4.01 -104.65 -0.42 -0.71 16 8 C -0.08 -0.83 4.46 -27.88 -0.12 -0.95 16 9 C -0.06 -0.82 0.56 -154.51 -0.09 -0.90 16 10 C -0.15 -1.77 7.71 37.16 0.29 -1.49 16 11 C -0.14 -1.82 7.71 37.16 0.29 -1.54 16 12 C 0.14 2.25 5.11 -4.04 -0.02 2.23 16 13 N -1.13 -21.95 5.33 -10.61 -0.06 -22.01 16 14 S 2.72 71.36 5.02 -107.50 -0.54 70.82 16 15 O -1.01 -29.60 18.02 -57.17 -1.03 -30.63 16 16 O -1.01 -29.18 17.49 -57.17 -1.00 -30.18 16 17 C -1.02 -27.88 9.72 30.60 0.30 -27.58 16 18 H 0.10 2.54 7.81 -52.48 -0.41 2.13 16 19 C 0.13 3.71 5.46 -17.82 -0.10 3.61 16 20 N -0.85 -25.03 13.19 55.43 0.73 -24.30 16 21 Si 0.92 20.65 29.54 -169.99 -5.02 15.63 16 22 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 23 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 24 H -0.26 -5.67 7.11 56.52 0.40 -5.27 16 25 C -0.15 -1.61 7.82 -39.44 -0.31 -1.92 16 26 H 0.05 0.28 7.67 -51.93 -0.40 -0.12 16 27 H 0.05 0.29 7.65 -51.93 -0.40 -0.10 16 28 H 0.10 0.43 8.14 -51.93 -0.42 0.00 16 29 H 0.12 0.88 6.30 -52.49 -0.33 0.55 16 30 H 0.12 0.85 8.06 -52.49 -0.42 0.43 16 31 H 0.13 1.12 8.02 -52.49 -0.42 0.70 16 32 H 0.08 0.84 8.09 -51.93 -0.42 0.42 16 33 H 0.08 0.81 8.08 -51.93 -0.42 0.39 16 34 H 0.06 0.67 6.17 -51.93 -0.32 0.35 16 35 H 0.06 0.74 6.60 -51.93 -0.34 0.40 16 36 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.06 0.80 7.20 -51.93 -0.37 0.43 16 39 H 0.06 0.65 6.17 -51.93 -0.32 0.33 16 40 H 0.07 1.29 7.75 -51.93 -0.40 0.88 16 41 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 42 H 0.40 6.86 6.47 -34.47 -0.22 6.63 16 43 H 0.29 7.71 8.31 -40.82 -0.34 7.37 16 44 H 0.13 1.38 8.03 -52.48 -0.42 0.96 16 LS Contribution 367.38 15.07 5.54 5.54 Total: -1.00 -35.83 367.38 -8.56 -44.39 By element: Atomic # 1 Polarization: 13.03 SS G_CDS: -6.45 Total: 6.58 kcal Atomic # 6 Polarization: -31.83 SS G_CDS: -0.52 Total: -32.35 kcal Atomic # 7 Polarization: -46.98 SS G_CDS: 0.67 Total: -46.30 kcal Atomic # 8 Polarization: -62.06 SS G_CDS: -2.23 Total: -64.30 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.63 kcal Atomic # 16 Polarization: 71.36 SS G_CDS: -0.54 Total: 70.82 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -35.83 -8.56 -44.39 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001193001297.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.588 kcal (2) G-P(sol) polarization free energy of solvation -35.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.389 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds