Wall clock time and date at job start Tue Mar 31 2020 14:44:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35905 * 116.99604 * 2 1 4 4 C 1.38745 * 120.05685 * 359.72933 * 3 2 1 5 5 C 1.38130 * 119.94480 * 179.69913 * 4 3 2 6 6 C 1.38291 * 120.05012 * 0.59399 * 5 4 3 7 7 C 1.38246 * 120.11190 * 359.67962 * 6 5 4 8 8 C 1.50703 * 119.97077 * 179.97438 * 7 6 5 9 9 C 1.52997 * 109.46906 * 270.02263 * 8 7 6 10 10 C 1.52999 * 109.47092 * 299.99906 * 9 8 7 11 11 C 1.52999 * 109.47389 * 60.00366 * 9 8 7 12 12 C 1.53008 * 109.46974 * 180.02562 * 9 8 7 13 13 N 1.46495 * 109.47167 * 179.97438 * 12 9 8 14 14 S 1.65601 * 120.00181 * 164.99784 * 13 12 9 15 15 O 1.42102 * 106.40536 * 178.54011 * 14 13 12 16 16 O 1.42107 * 106.40051 * 311.46184 * 14 13 12 17 17 C 1.76202 * 107.21614 * 65.00024 * 14 13 12 18 18 H 1.08003 * 119.99763 * 0.02562 * 17 14 13 19 19 C 1.37875 * 120.00034 * 180.02562 * 17 14 13 20 20 N 1.31515 * 120.00036 * 359.97438 * 19 17 14 21 21 Si 1.86801 * 120.00150 * 179.97438 * 19 17 14 22 22 H 1.48503 * 109.46877 * 90.00065 * 21 19 17 23 23 H 1.48494 * 109.47182 * 209.99713 * 21 19 17 24 24 H 1.48501 * 109.47121 * 330.00148 * 21 19 17 25 25 C 1.38159 * 120.05555 * 0.02562 * 7 6 5 26 26 H 1.08996 * 109.47352 * 299.99771 * 1 2 3 27 27 H 1.08999 * 109.47144 * 59.99795 * 1 2 3 28 28 H 1.08995 * 109.47253 * 179.97438 * 1 2 3 29 29 H 1.07997 * 120.03176 * 359.97124 * 4 3 2 30 30 H 1.07997 * 119.97739 * 180.29791 * 5 4 3 31 31 H 1.08001 * 119.94552 * 179.70178 * 6 5 4 32 32 H 1.09002 * 109.47303 * 30.02167 * 8 7 6 33 33 H 1.09000 * 109.47206 * 150.02292 * 8 7 6 34 34 H 1.08994 * 109.47064 * 60.00515 * 10 9 8 35 35 H 1.09006 * 109.47070 * 180.02562 * 10 9 8 36 36 H 1.09000 * 109.47195 * 300.00078 * 10 9 8 37 37 H 1.08993 * 109.47144 * 59.99586 * 11 9 8 38 38 H 1.09006 * 109.47175 * 179.97438 * 11 9 8 39 39 H 1.08999 * 109.46673 * 299.99423 * 11 9 8 40 40 H 1.09003 * 109.46674 * 299.99730 * 12 9 8 41 41 H 1.08993 * 109.46916 * 59.99804 * 12 9 8 42 42 H 0.97005 * 120.00019 * 345.00526 * 13 12 9 43 43 H 0.96997 * 120.00096 * 179.97438 * 20 19 17 44 44 H 1.08006 * 120.02917 * 180.02562 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2110 0.0000 4 6 1.2914 2.3753 -0.0057 5 6 1.9207 3.6048 0.0006 6 6 3.3018 3.6759 0.0002 7 6 4.0559 2.5172 0.0001 8 6 5.5607 2.5983 -0.0010 9 6 6.0689 2.6257 -1.4438 10 6 5.6263 1.3508 -2.1647 11 6 5.4920 3.8457 -2.1647 12 6 7.5968 2.7074 -1.4450 13 7 8.0834 2.7331 -2.8265 14 16 9.6432 3.1882 -3.1467 15 8 9.8131 3.0768 -4.5531 16 8 9.8640 4.3954 -2.4303 17 6 10.6988 1.9786 -2.4206 18 1 10.2737 1.1396 -1.8897 19 6 12.0676 2.1031 -2.5303 20 7 12.5852 3.1245 -3.1772 21 14 13.1868 0.8212 -1.7599 22 1 13.4554 -0.2574 -2.7448 23 1 14.4678 1.4578 -1.3614 24 1 12.5269 0.2440 -0.5613 25 6 3.4311 1.2849 -0.0001 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 0.2128 2.3203 -0.0106 30 1 1.3339 4.5114 0.0011 31 1 3.7922 4.6381 0.0002 32 1 5.8760 3.5065 0.5126 33 1 5.9718 1.7291 0.5125 34 1 4.5380 1.2922 -2.1640 35 1 5.9888 1.3702 -3.1926 36 1 6.0374 0.4817 -1.6512 37 1 5.8072 4.7539 -1.6511 38 1 5.8544 3.8655 -3.1925 39 1 4.4035 3.7870 -2.1639 40 1 7.9124 3.6155 -0.9312 41 1 8.0074 1.8381 -0.9316 42 1 7.4920 2.4836 -3.5538 43 1 13.5481 3.2123 -3.2540 44 1 4.0206 0.3800 0.0003 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001193001297.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:44:29 Heat of formation + Delta-G solvation = -147.679607 kcal Electronic energy + Delta-G solvation = -25980.802407 eV Core-core repulsion = 22216.175014 eV Total energy + Delta-G solvation = -3764.627394 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.22069 -39.64357 -37.86717 -37.30721 -36.08566 -35.17613 -34.38621 -31.91011 -31.12392 -28.42623 -28.22189 -28.01271 -27.66526 -26.19272 -23.34305 -22.11847 -21.02793 -19.95219 -19.32326 -18.45692 -18.15335 -17.20509 -17.12726 -16.84801 -16.63671 -16.59618 -16.01891 -15.59392 -15.50979 -15.20035 -14.96589 -14.55382 -14.29326 -13.98249 -13.91603 -13.64167 -13.39947 -13.22270 -12.99661 -12.84899 -12.71295 -12.57579 -12.54097 -12.45600 -12.35839 -12.30765 -12.28494 -12.03003 -11.78520 -11.60968 -11.57735 -11.29961 -11.22629 -10.95500 -10.08720 -9.65320 -9.05979 -8.72380 -7.44428 0.37937 0.47296 0.56851 1.36004 1.36161 1.52200 2.23053 2.42932 2.61033 2.84744 3.08616 3.65730 3.77677 3.90237 3.98292 4.03043 4.08234 4.28792 4.34626 4.41219 4.46965 4.51974 4.53533 4.59696 4.64902 4.72848 4.75276 4.81582 4.90713 4.95666 4.96757 5.07355 5.12054 5.18392 5.22399 5.29953 5.37297 5.41093 5.49177 5.51522 5.57412 5.78752 5.91378 5.94263 6.45229 6.52761 6.81865 8.23798 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.022800 B = 0.002741 C = 0.002603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1227.758230 B =10212.514330 C =10755.389796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.340 6.340 3 C 0.111 3.889 4 C -0.218 4.218 5 C -0.083 4.083 6 C -0.159 4.159 7 C -0.033 4.033 8 C -0.072 4.072 9 C -0.054 4.054 10 C -0.144 4.144 11 C -0.145 4.145 12 C 0.128 3.872 13 N -1.117 6.117 14 S 2.723 3.277 15 O -1.048 7.048 16 O -1.043 7.043 17 C -1.038 5.038 18 H 0.121 0.879 19 C 0.069 3.931 20 N -0.895 5.895 21 Si 0.990 3.010 22 H -0.257 1.257 23 H -0.264 1.264 24 H -0.246 1.246 25 C -0.161 4.161 26 H 0.064 0.936 27 H 0.062 0.938 28 H 0.115 0.885 29 H 0.144 0.856 30 H 0.145 0.855 31 H 0.133 0.867 32 H 0.086 0.914 33 H 0.085 0.915 34 H 0.066 0.934 35 H 0.051 0.949 36 H 0.062 0.938 37 H 0.056 0.944 38 H 0.046 0.954 39 H 0.072 0.928 40 H 0.064 0.936 41 H 0.069 0.931 42 H 0.412 0.588 43 H 0.298 0.702 44 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.236 -4.873 9.476 26.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.254 6.254 3 C 0.066 3.934 4 C -0.236 4.236 5 C -0.101 4.101 6 C -0.177 4.177 7 C -0.033 4.033 8 C -0.110 4.110 9 C -0.056 4.056 10 C -0.201 4.201 11 C -0.202 4.202 12 C 0.002 3.998 13 N -0.878 5.878 14 S 2.823 3.177 15 O -1.039 7.039 16 O -1.033 7.033 17 C -1.171 5.171 18 H 0.139 0.861 19 C -0.144 4.144 20 N -0.527 5.527 21 Si 0.808 3.192 22 H -0.181 1.181 23 H -0.189 1.189 24 H -0.169 1.169 25 C -0.179 4.179 26 H 0.083 0.917 27 H 0.081 0.919 28 H 0.133 0.867 29 H 0.162 0.838 30 H 0.163 0.837 31 H 0.151 0.849 32 H 0.104 0.896 33 H 0.104 0.896 34 H 0.085 0.915 35 H 0.070 0.930 36 H 0.081 0.919 37 H 0.075 0.925 38 H 0.065 0.935 39 H 0.091 0.909 40 H 0.083 0.917 41 H 0.087 0.913 42 H 0.247 0.753 43 H 0.108 0.892 44 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -23.670 -4.103 9.063 25.676 hybrid contribution 0.451 -0.799 -0.034 0.918 sum -23.220 -4.902 9.029 25.391 Atomic orbital electron populations 1.23291 0.76692 1.05316 1.02128 1.86047 1.23288 1.27199 1.88857 1.19197 0.92512 0.84730 0.96998 1.21445 1.00882 0.92111 1.09194 1.21210 0.94558 0.97725 0.96616 1.21219 0.94150 0.98422 1.03958 1.19577 0.95373 0.92221 0.96173 1.20681 0.90651 1.04389 0.95289 1.20585 0.92157 0.96942 0.95899 1.21957 1.01651 0.96390 1.00110 1.21962 1.01290 0.96941 1.00026 1.21370 0.95009 1.01887 0.81545 1.55337 1.30553 1.87482 1.14411 0.99771 0.71583 0.74299 0.72025 1.93306 1.86118 1.88728 1.35722 1.93300 1.85519 1.49284 1.75178 1.30916 1.05283 1.28987 1.51912 0.86096 1.26011 0.99820 0.97332 0.91217 1.69997 1.16291 1.29793 1.36621 0.85136 0.76852 0.77610 0.79608 1.18135 1.18871 1.16900 1.20432 0.91622 0.98507 1.07364 0.91732 0.91901 0.86700 0.83842 0.83740 0.84931 0.89551 0.89595 0.91486 0.93010 0.91876 0.92458 0.93509 0.90938 0.91727 0.91297 0.75277 0.89225 0.85449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 9.81 113.37 1.11 1.32 16 2 O -0.34 -6.54 10.50 -92.48 -0.97 -7.51 16 3 C 0.11 2.21 6.69 22.50 0.15 2.36 16 4 C -0.22 -3.57 9.04 22.37 0.20 -3.37 16 5 C -0.08 -1.32 10.04 22.26 0.22 -1.09 16 6 C -0.16 -2.87 7.88 22.28 0.18 -2.69 16 7 C -0.03 -0.66 4.01 -19.88 -0.08 -0.74 16 8 C -0.07 -1.48 4.46 29.85 0.13 -1.35 16 9 C -0.05 -1.33 0.56 -52.18 -0.03 -1.36 16 10 C -0.14 -3.33 7.71 71.98 0.55 -2.78 16 11 C -0.14 -3.54 7.71 71.98 0.56 -2.98 16 12 C 0.13 4.13 5.11 86.38 0.44 4.57 16 13 N -1.12 -43.37 5.33 -187.49 -1.00 -44.37 16 14 S 2.72 145.90 5.02 -56.49 -0.28 145.62 16 15 O -1.05 -63.20 18.02 -128.00 -2.31 -65.50 16 16 O -1.04 -62.04 17.49 -128.00 -2.24 -64.28 16 17 C -1.04 -56.72 9.72 67.73 0.66 -56.06 16 18 H 0.12 5.91 7.81 -2.91 -0.02 5.88 16 19 C 0.07 3.83 5.46 84.65 0.46 4.29 16 20 N -0.90 -53.81 13.19 21.45 0.28 -53.53 16 21 Si 0.99 41.36 29.54 68.60 2.03 43.39 16 22 H -0.26 -10.22 7.11 99.48 0.71 -9.51 16 23 H -0.26 -10.46 7.11 99.48 0.71 -9.76 16 24 H -0.25 -9.51 7.11 99.48 0.71 -8.81 16 25 C -0.16 -3.35 7.82 22.36 0.17 -3.17 16 26 H 0.06 0.52 7.67 -2.39 -0.02 0.51 16 27 H 0.06 0.54 7.65 -2.39 -0.02 0.52 16 28 H 0.11 0.76 8.14 -2.39 -0.02 0.74 16 29 H 0.14 1.65 6.30 -2.91 -0.02 1.63 16 30 H 0.14 1.57 8.06 -2.91 -0.02 1.54 16 31 H 0.13 2.12 8.02 -2.91 -0.02 2.10 16 32 H 0.09 1.67 8.09 -2.39 -0.02 1.65 16 33 H 0.09 1.64 8.08 -2.39 -0.02 1.62 16 34 H 0.07 1.45 6.17 -2.39 -0.01 1.44 16 35 H 0.05 1.26 6.60 -2.38 -0.02 1.24 16 36 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 37 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 38 H 0.05 1.24 7.20 -2.38 -0.02 1.22 16 39 H 0.07 1.54 6.17 -2.39 -0.01 1.53 16 40 H 0.06 2.23 7.75 -2.39 -0.02 2.21 16 41 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 42 H 0.41 14.14 6.47 -96.74 -0.63 13.51 16 43 H 0.30 16.08 8.31 -92.71 -0.77 15.31 16 44 H 0.13 2.62 8.03 -2.91 -0.02 2.59 16 Total: -1.00 -77.88 367.38 0.62 -77.25 By element: Atomic # 1 Polarization: 31.61 SS G_CDS: 0.38 Total: 31.99 kcal Atomic # 6 Polarization: -67.78 SS G_CDS: 4.74 Total: -63.05 kcal Atomic # 7 Polarization: -97.18 SS G_CDS: -0.72 Total: -97.90 kcal Atomic # 8 Polarization: -131.78 SS G_CDS: -5.52 Total: -137.30 kcal Atomic # 14 Polarization: 41.36 SS G_CDS: 2.03 Total: 43.39 kcal Atomic # 16 Polarization: 145.90 SS G_CDS: -0.28 Total: 145.62 kcal Total: -77.88 0.62 -77.25 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001193001297.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.429 kcal (2) G-P(sol) polarization free energy of solvation -77.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.251 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds