Wall clock time and date at job start Tue Mar 31 2020 15:49:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53010 * 109.46996 * 2 1 4 4 N 1.46500 * 109.47184 * 180.02562 * 3 2 1 5 5 C 1.46498 * 119.99971 * 275.00224 * 4 3 2 6 6 C 1.50698 * 109.46604 * 274.99787 * 5 4 3 7 7 H 1.07993 * 120.00500 * 0.02562 * 6 5 4 8 8 C 1.37885 * 119.99943 * 179.97438 * 6 5 4 9 9 N 1.31517 * 119.99762 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 120.00251 * 179.97438 * 8 6 5 11 11 H 1.48496 * 109.46916 * 89.99976 * 10 8 6 12 12 H 1.48490 * 109.46994 * 210.00211 * 10 8 6 13 13 H 1.48506 * 109.46937 * 330.00402 * 10 8 6 14 14 S 1.65602 * 119.99644 * 94.99599 * 4 3 2 15 15 O 1.42090 * 104.28164 * 333.93001 * 14 4 3 16 16 O 1.42101 * 104.27267 * 206.06861 * 14 4 3 17 17 C 1.81402 * 104.44482 * 90.00336 * 14 4 3 18 18 C 1.50703 * 109.46920 * 179.97438 * 17 14 4 19 19 C 1.38291 * 119.97179 * 270.02243 * 18 17 14 20 20 C 1.38246 * 120.11138 * 180.02562 * 19 18 17 21 21 C 1.38169 * 120.05567 * 359.67999 * 20 19 18 22 22 C 1.38709 * 119.93966 * 0.57015 * 21 20 19 23 23 O 1.35905 * 120.05570 * 179.72312 * 22 21 20 24 24 C 1.42901 * 116.99604 * 359.72908 * 23 22 21 25 25 C 1.38119 * 119.97324 * 89.99986 * 18 17 14 26 26 H 1.08993 * 109.47456 * 60.00033 * 1 2 3 27 27 H 1.08997 * 109.46824 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47130 * 299.99869 * 1 2 3 29 29 H 1.09002 * 109.47130 * 240.00131 * 2 1 3 30 30 H 1.09002 * 109.47556 * 119.99782 * 2 1 3 31 31 H 1.09002 * 109.47074 * 60.00097 * 3 2 1 32 32 H 1.09002 * 109.46790 * 300.00251 * 3 2 1 33 33 H 1.08994 * 109.47240 * 34.99851 * 5 4 3 34 34 H 1.09005 * 109.47171 * 155.00003 * 5 4 3 35 35 H 0.96994 * 119.99980 * 180.02562 * 9 8 6 36 36 H 1.09001 * 109.47142 * 60.00242 * 17 14 4 37 37 H 1.08994 * 109.47337 * 299.99444 * 17 14 4 38 38 H 1.08002 * 119.94189 * 359.97438 * 19 18 17 39 39 H 1.07998 * 119.97048 * 179.97438 * 20 19 18 40 40 H 1.07997 * 120.02712 * 180.29728 * 21 20 19 41 41 H 1.08995 * 109.47253 * 179.97438 * 24 23 22 42 42 H 1.08996 * 109.47352 * 299.99771 * 24 23 22 43 43 H 1.08999 * 109.47144 * 59.99795 * 24 23 22 44 44 H 1.08006 * 120.02943 * 0.02562 * 25 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5050 1.4426 -0.0006 5 6 4.2380 1.3319 1.2629 6 6 4.3821 2.6985 1.8814 7 1 3.9687 3.5630 1.3834 8 6 5.0409 2.8451 3.0838 9 7 5.5440 1.7923 3.6906 10 14 5.2203 4.5392 3.8502 11 1 4.0598 4.8065 4.7373 12 1 6.4735 4.5928 4.6448 13 1 5.2699 5.5650 2.7775 14 16 4.3323 1.5678 -1.4297 15 8 3.4359 1.0454 -2.4005 16 8 5.5789 0.9375 -1.1692 17 6 4.5585 3.3520 -1.6669 18 6 5.3090 3.5969 -2.9506 19 6 6.6906 3.6565 -2.9425 20 6 7.3820 3.8815 -4.1183 21 6 6.6941 4.0409 -5.3059 22 6 5.3081 3.9867 -5.3158 23 8 4.6289 4.1487 -6.4817 24 6 5.4061 4.3773 -7.6589 25 6 4.6165 3.7611 -4.1343 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 1.6766 1.9564 0.8900 32 1 1.6766 1.9564 -0.8900 33 1 3.6910 0.6805 1.9444 34 1 5.2263 0.9124 1.0741 35 1 6.0071 1.8953 4.5366 36 1 5.1262 3.7606 -0.8309 37 1 3.5843 3.8382 -1.7168 38 1 7.2303 3.5278 -2.0159 39 1 8.4609 3.9280 -4.1093 40 1 7.2349 4.2118 -6.2250 41 1 4.7426 4.4888 -8.5164 42 1 5.9953 5.2858 -7.5345 43 1 6.0733 3.5313 -7.8237 44 1 3.5374 3.7145 -4.1401 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001197367038.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:49:39 Heat of formation + Delta-G solvation = -93.769472 kcal Electronic energy + Delta-G solvation = -26347.768853 eV Core-core repulsion = 22585.479178 eV Total energy + Delta-G solvation = -3762.289675 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.22156 -37.73996 -36.61542 -36.30321 -35.27958 -33.17313 -32.69322 -31.79604 -30.58165 -27.69885 -27.41699 -26.90356 -25.01286 -22.68654 -22.51148 -21.36362 -20.94471 -18.33678 -17.85144 -16.96456 -16.47894 -16.41952 -16.06006 -15.92350 -15.71041 -15.58429 -14.67866 -14.44702 -14.16515 -13.97467 -13.63119 -13.40689 -13.25551 -12.82704 -12.52841 -12.33848 -12.16335 -12.11234 -11.74683 -11.68204 -11.62586 -11.49573 -11.35848 -11.29427 -11.11750 -10.98326 -10.96066 -10.80850 -10.59376 -10.45099 -10.26696 -9.96285 -9.77170 -8.84463 -8.52793 -8.28236 -7.98479 -6.14426 -4.22498 0.68260 1.35369 1.41853 3.08963 3.22592 3.29414 3.30750 3.38072 3.68792 4.29476 4.35745 4.60938 4.65315 4.71561 4.92110 4.93336 4.96570 5.18136 5.21609 5.25461 5.33003 5.34787 5.41527 5.44695 5.59139 5.64478 5.73519 5.78849 6.03430 6.16771 6.18257 6.19557 6.25139 6.37394 6.38628 6.52789 6.64277 6.72849 6.74760 7.27299 7.35301 7.41199 7.64043 7.82149 8.11074 8.82318 9.44228 10.93232 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.011524 B = 0.004284 C = 0.003439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2429.063415 B = 6533.641741 C = 8139.688147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.145 4.145 3 C 0.132 3.868 4 N -0.984 5.984 5 C 0.242 3.758 6 C -0.549 4.549 7 H 0.062 0.938 8 C 0.066 3.934 9 N -0.886 5.886 10 Si 0.893 3.107 11 H -0.279 1.279 12 H -0.285 1.285 13 H -0.273 1.273 14 S 2.610 3.390 15 O -0.968 6.968 16 O -0.949 6.949 17 C -0.596 4.596 18 C -0.041 4.041 19 C -0.141 4.141 20 C -0.078 4.078 21 C -0.208 4.208 22 C 0.125 3.875 23 O -0.316 6.316 24 C 0.027 3.973 25 C -0.141 4.141 26 H 0.052 0.948 27 H 0.051 0.949 28 H 0.054 0.946 29 H 0.065 0.935 30 H 0.068 0.932 31 H 0.081 0.919 32 H 0.064 0.936 33 H 0.041 0.959 34 H 0.055 0.945 35 H 0.265 0.735 36 H 0.155 0.845 37 H 0.136 0.864 38 H 0.137 0.863 39 H 0.130 0.870 40 H 0.129 0.871 41 H 0.099 0.901 42 H 0.054 0.946 43 H 0.055 0.945 44 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.975 4.561 -16.127 16.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.184 4.184 3 C 0.006 3.994 4 N -0.822 5.822 5 C 0.120 3.880 6 C -0.588 4.588 7 H 0.080 0.920 8 C -0.138 4.138 9 N -0.524 5.524 10 Si 0.720 3.280 11 H -0.205 1.205 12 H -0.210 1.210 13 H -0.198 1.198 14 S 2.702 3.298 15 O -0.959 6.959 16 O -0.939 6.939 17 C -0.721 4.721 18 C -0.043 4.043 19 C -0.160 4.160 20 C -0.096 4.096 21 C -0.227 4.227 22 C 0.080 3.920 23 O -0.230 6.230 24 C -0.068 4.068 25 C -0.161 4.161 26 H 0.071 0.929 27 H 0.070 0.930 28 H 0.073 0.927 29 H 0.084 0.916 30 H 0.086 0.914 31 H 0.099 0.901 32 H 0.082 0.918 33 H 0.059 0.941 34 H 0.073 0.927 35 H 0.075 0.925 36 H 0.173 0.827 37 H 0.154 0.846 38 H 0.155 0.845 39 H 0.148 0.852 40 H 0.147 0.853 41 H 0.117 0.883 42 H 0.073 0.927 43 H 0.074 0.926 44 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -1.800 3.790 -16.501 17.026 hybrid contribution 0.294 1.783 0.764 1.962 sum -1.506 5.573 -15.737 16.762 Atomic orbital electron populations 1.21684 0.95890 1.01323 1.01552 1.21969 0.95401 0.98220 1.02814 1.21120 0.79732 0.96412 1.02151 1.57461 1.13745 1.87212 1.23738 1.19252 0.92509 0.97354 0.78858 1.21592 1.36937 0.93788 1.06504 0.91998 1.24956 0.95072 0.96878 0.96845 1.69932 1.36457 1.29025 1.16976 0.86589 0.77728 0.84209 0.79465 1.20516 1.21020 1.19784 1.05010 0.74339 0.77040 0.73442 1.93526 1.64922 1.76274 1.61152 1.93561 1.44532 1.71718 1.84097 1.29902 1.09215 1.30245 1.02731 1.18890 0.93622 0.99739 0.92042 1.21221 0.93310 1.01988 0.99525 1.20947 1.00033 0.97045 0.91572 1.21270 0.92931 1.08804 0.99683 1.18894 0.90519 0.96600 0.85964 1.86078 1.35696 1.86740 1.14480 1.23051 0.97145 1.00742 0.85854 1.20376 1.00804 1.05292 0.89630 0.92874 0.92993 0.92708 0.91589 0.91363 0.90102 0.91809 0.94090 0.92727 0.92494 0.82740 0.84586 0.84525 0.85163 0.85302 0.88278 0.92700 0.92593 0.84503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.90 9.91 37.16 0.37 -1.53 16 2 C -0.14 -2.35 6.26 -26.73 -0.17 -2.52 16 3 C 0.13 2.29 5.26 -4.04 -0.02 2.27 16 4 N -0.98 -20.07 2.70 -115.66 -0.31 -20.38 16 5 C 0.24 5.92 5.41 -5.20 -0.03 5.89 16 6 C -0.55 -14.03 9.38 -34.44 -0.32 -14.35 16 7 H 0.06 1.49 7.81 -52.49 -0.41 1.08 16 8 C 0.07 1.76 5.46 -17.82 -0.10 1.66 16 9 N -0.89 -24.96 13.29 55.43 0.74 -24.22 16 10 Si 0.89 20.30 29.54 -169.99 -5.02 15.27 16 11 H -0.28 -6.29 7.11 56.52 0.40 -5.88 16 12 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 13 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 14 S 2.61 51.61 5.35 -107.50 -0.58 51.04 16 15 O -0.97 -19.72 16.75 -57.54 -0.96 -20.68 16 16 O -0.95 -21.90 16.53 -57.54 -0.95 -22.85 16 17 C -0.60 -9.79 6.30 36.01 0.23 -9.56 16 18 C -0.04 -0.66 5.14 -104.64 -0.54 -1.20 16 19 C -0.14 -2.13 9.70 -39.56 -0.38 -2.51 16 20 C -0.08 -0.98 10.04 -39.60 -0.40 -1.38 16 21 C -0.21 -2.49 9.04 -39.43 -0.36 -2.85 16 22 C 0.13 1.72 6.69 -39.22 -0.26 1.46 16 23 O -0.32 -3.93 10.50 -19.44 -0.20 -4.13 16 24 C 0.03 0.21 9.81 101.05 0.99 1.20 16 25 C -0.14 -2.14 9.64 -39.43 -0.38 -2.52 16 26 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 27 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 29 H 0.07 1.13 7.90 -51.93 -0.41 0.72 16 30 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 31 H 0.08 1.38 8.11 -51.93 -0.42 0.96 16 32 H 0.06 0.97 7.61 -51.93 -0.39 0.57 16 33 H 0.04 1.04 8.11 -51.93 -0.42 0.62 16 34 H 0.05 1.47 6.82 -51.93 -0.35 1.12 16 35 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 36 H 0.15 2.57 8.08 -51.92 -0.42 2.15 16 37 H 0.14 1.88 8.08 -51.93 -0.42 1.46 16 38 H 0.14 1.98 8.06 -52.49 -0.42 1.56 16 39 H 0.13 1.25 8.06 -52.49 -0.42 0.83 16 40 H 0.13 1.14 6.30 -52.49 -0.33 0.81 16 41 H 0.10 0.55 8.14 -51.93 -0.42 0.12 16 42 H 0.05 0.35 7.67 -51.93 -0.40 -0.04 16 43 H 0.06 0.38 7.65 -51.93 -0.40 -0.02 16 44 H 0.14 1.92 8.06 -52.48 -0.42 1.50 16 LS Contribution 381.35 15.07 5.75 5.75 Total: -1.00 -32.39 381.35 -9.81 -42.20 By element: Atomic # 1 Polarization: 10.84 SS G_CDS: -6.89 Total: 3.95 kcal Atomic # 6 Polarization: -24.57 SS G_CDS: -1.37 Total: -25.94 kcal Atomic # 7 Polarization: -45.03 SS G_CDS: 0.42 Total: -44.60 kcal Atomic # 8 Polarization: -45.55 SS G_CDS: -2.12 Total: -47.67 kcal Atomic # 14 Polarization: 20.30 SS G_CDS: -5.02 Total: 15.27 kcal Atomic # 16 Polarization: 51.61 SS G_CDS: -0.58 Total: 51.04 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -32.39 -9.81 -42.20 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001197367038.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.569 kcal (2) G-P(sol) polarization free energy of solvation -32.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.201 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds