Wall clock time and date at job start Tue Mar 31 2020 15:49:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53010 * 109.46996 * 2 1 4 4 N 1.46500 * 109.47184 * 180.02562 * 3 2 1 5 5 C 1.46498 * 119.99971 * 275.00224 * 4 3 2 6 6 C 1.50698 * 109.46604 * 274.99787 * 5 4 3 7 7 H 1.07993 * 120.00500 * 0.02562 * 6 5 4 8 8 C 1.37885 * 119.99943 * 179.97438 * 6 5 4 9 9 N 1.31517 * 119.99762 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 120.00251 * 179.97438 * 8 6 5 11 11 H 1.48496 * 109.46916 * 89.99976 * 10 8 6 12 12 H 1.48490 * 109.46994 * 210.00211 * 10 8 6 13 13 H 1.48506 * 109.46937 * 330.00402 * 10 8 6 14 14 S 1.65602 * 119.99644 * 94.99599 * 4 3 2 15 15 O 1.42090 * 104.28164 * 333.93001 * 14 4 3 16 16 O 1.42101 * 104.27267 * 206.06861 * 14 4 3 17 17 C 1.81402 * 104.44482 * 90.00336 * 14 4 3 18 18 C 1.50703 * 109.46920 * 179.97438 * 17 14 4 19 19 C 1.38291 * 119.97179 * 270.02243 * 18 17 14 20 20 C 1.38246 * 120.11138 * 180.02562 * 19 18 17 21 21 C 1.38169 * 120.05567 * 359.67999 * 20 19 18 22 22 C 1.38709 * 119.93966 * 0.57015 * 21 20 19 23 23 O 1.35905 * 120.05570 * 179.72312 * 22 21 20 24 24 C 1.42901 * 116.99604 * 359.72908 * 23 22 21 25 25 C 1.38119 * 119.97324 * 89.99986 * 18 17 14 26 26 H 1.08993 * 109.47456 * 60.00033 * 1 2 3 27 27 H 1.08997 * 109.46824 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47130 * 299.99869 * 1 2 3 29 29 H 1.09002 * 109.47130 * 240.00131 * 2 1 3 30 30 H 1.09002 * 109.47556 * 119.99782 * 2 1 3 31 31 H 1.09002 * 109.47074 * 60.00097 * 3 2 1 32 32 H 1.09002 * 109.46790 * 300.00251 * 3 2 1 33 33 H 1.08994 * 109.47240 * 34.99851 * 5 4 3 34 34 H 1.09005 * 109.47171 * 155.00003 * 5 4 3 35 35 H 0.96994 * 119.99980 * 180.02562 * 9 8 6 36 36 H 1.09001 * 109.47142 * 60.00242 * 17 14 4 37 37 H 1.08994 * 109.47337 * 299.99444 * 17 14 4 38 38 H 1.08002 * 119.94189 * 359.97438 * 19 18 17 39 39 H 1.07998 * 119.97048 * 179.97438 * 20 19 18 40 40 H 1.07997 * 120.02712 * 180.29728 * 21 20 19 41 41 H 1.08995 * 109.47253 * 179.97438 * 24 23 22 42 42 H 1.08996 * 109.47352 * 299.99771 * 24 23 22 43 43 H 1.08999 * 109.47144 * 59.99795 * 24 23 22 44 44 H 1.08006 * 120.02943 * 0.02562 * 25 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5050 1.4426 -0.0006 5 6 4.2380 1.3319 1.2629 6 6 4.3821 2.6985 1.8814 7 1 3.9687 3.5630 1.3834 8 6 5.0409 2.8451 3.0838 9 7 5.5440 1.7923 3.6906 10 14 5.2203 4.5392 3.8502 11 1 4.0598 4.8065 4.7373 12 1 6.4735 4.5928 4.6448 13 1 5.2699 5.5650 2.7775 14 16 4.3323 1.5678 -1.4297 15 8 3.4359 1.0454 -2.4005 16 8 5.5789 0.9375 -1.1692 17 6 4.5585 3.3520 -1.6669 18 6 5.3090 3.5969 -2.9506 19 6 6.6906 3.6565 -2.9425 20 6 7.3820 3.8815 -4.1183 21 6 6.6941 4.0409 -5.3059 22 6 5.3081 3.9867 -5.3158 23 8 4.6289 4.1487 -6.4817 24 6 5.4061 4.3773 -7.6589 25 6 4.6165 3.7611 -4.1343 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 1.6766 1.9564 0.8900 32 1 1.6766 1.9564 -0.8900 33 1 3.6910 0.6805 1.9444 34 1 5.2263 0.9124 1.0741 35 1 6.0071 1.8953 4.5366 36 1 5.1262 3.7606 -0.8309 37 1 3.5843 3.8382 -1.7168 38 1 7.2303 3.5278 -2.0159 39 1 8.4609 3.9280 -4.1093 40 1 7.2349 4.2118 -6.2250 41 1 4.7426 4.4888 -8.5164 42 1 5.9953 5.2858 -7.5345 43 1 6.0733 3.5313 -7.8237 44 1 3.5374 3.7145 -4.1401 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001197367038.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:49:38 Heat of formation + Delta-G solvation = -114.456879 kcal Electronic energy + Delta-G solvation = -26348.665926 eV Core-core repulsion = 22585.479178 eV Total energy + Delta-G solvation = -3763.186748 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.18129 -38.70896 -38.22682 -37.92648 -36.93891 -34.96848 -33.82157 -33.38744 -31.56087 -29.23131 -28.66534 -27.82086 -26.53019 -24.37419 -23.65269 -22.44941 -22.28460 -19.83960 -18.99198 -18.55896 -18.40738 -17.53472 -17.27928 -17.18339 -16.99170 -16.64616 -16.39579 -15.78687 -15.30962 -15.28956 -14.87663 -14.77372 -14.40586 -14.19289 -13.81163 -13.78357 -13.56168 -13.34704 -13.16834 -13.11309 -12.97598 -12.92615 -12.79031 -12.72075 -12.49044 -12.38984 -12.28516 -12.18045 -11.98216 -11.89154 -11.79342 -11.59743 -11.39295 -10.57470 -10.02658 -9.64307 -9.27032 -8.16497 -6.32013 -0.80149 0.24983 0.34800 1.44727 1.45401 1.55317 1.77448 2.27682 2.42592 2.61873 2.87866 3.14804 3.18926 3.38392 3.75266 3.92310 3.94525 4.06733 4.19075 4.22512 4.29337 4.33443 4.41790 4.45521 4.50538 4.56273 4.58767 4.75016 4.80871 4.93249 4.94533 5.02249 5.17647 5.21293 5.29597 5.33247 5.33475 5.44010 5.47027 5.54944 5.64003 5.76526 5.94368 6.09499 6.37934 6.81179 7.39048 8.91597 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.011524 B = 0.004284 C = 0.003439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2429.063415 B = 6533.641741 C = 8139.688147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.146 4.146 3 C 0.123 3.877 4 N -0.990 5.990 5 C 0.258 3.742 6 C -0.552 4.552 7 H 0.078 0.922 8 C 0.011 3.989 9 N -0.928 5.928 10 Si 0.960 3.040 11 H -0.272 1.272 12 H -0.287 1.287 13 H -0.259 1.259 14 S 2.607 3.393 15 O -0.979 6.979 16 O -0.993 6.993 17 C -0.572 4.572 18 C -0.065 4.065 19 C -0.165 4.165 20 C -0.076 4.076 21 C -0.198 4.198 22 C 0.119 3.881 23 O -0.333 6.333 24 C 0.015 3.985 25 C -0.160 4.160 26 H 0.066 0.934 27 H 0.063 0.937 28 H 0.063 0.937 29 H 0.052 0.948 30 H 0.050 0.950 31 H 0.084 0.916 32 H 0.089 0.911 33 H 0.020 0.980 34 H 0.020 0.980 35 H 0.266 0.734 36 H 0.152 0.848 37 H 0.164 0.836 38 H 0.131 0.869 39 H 0.162 0.838 40 H 0.166 0.834 41 H 0.120 0.880 42 H 0.070 0.930 43 H 0.066 0.934 44 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.357 7.021 -18.155 19.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.186 4.186 3 C -0.003 4.003 4 N -0.827 5.827 5 C 0.135 3.865 6 C -0.591 4.591 7 H 0.096 0.904 8 C -0.189 4.189 9 N -0.567 5.567 10 Si 0.784 3.216 11 H -0.198 1.198 12 H -0.213 1.213 13 H -0.183 1.183 14 S 2.704 3.296 15 O -0.970 6.970 16 O -0.983 6.983 17 C -0.701 4.701 18 C -0.067 4.067 19 C -0.184 4.184 20 C -0.093 4.093 21 C -0.217 4.217 22 C 0.074 3.926 23 O -0.247 6.247 24 C -0.079 4.079 25 C -0.180 4.180 26 H 0.085 0.915 27 H 0.082 0.918 28 H 0.082 0.918 29 H 0.070 0.930 30 H 0.069 0.931 31 H 0.102 0.898 32 H 0.108 0.892 33 H 0.038 0.962 34 H 0.038 0.962 35 H 0.075 0.925 36 H 0.170 0.830 37 H 0.182 0.818 38 H 0.149 0.851 39 H 0.179 0.821 40 H 0.183 0.817 41 H 0.138 0.862 42 H 0.089 0.911 43 H 0.085 0.915 44 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -2.221 6.204 -18.543 19.679 hybrid contribution 0.439 1.030 1.187 1.632 sum -1.783 7.234 -17.356 18.887 Atomic orbital electron populations 1.21651 0.92925 1.02565 1.02665 1.21972 0.98029 0.97291 1.01287 1.21415 0.77941 0.97413 1.03504 1.57335 1.15014 1.88110 1.22286 1.18759 0.90994 0.96676 0.80092 1.21941 1.36261 0.94440 1.06448 0.90430 1.25851 0.94825 1.00635 0.97539 1.70076 1.37662 1.31425 1.17527 0.85530 0.77554 0.79726 0.78768 1.19788 1.21266 1.18289 1.04892 0.73248 0.78560 0.72885 1.93498 1.64815 1.77686 1.60952 1.93501 1.46205 1.74105 1.84526 1.29592 1.11111 1.25877 1.03530 1.18909 0.94137 1.01785 0.91886 1.21417 0.93294 1.03112 1.00618 1.21330 1.01646 0.95578 0.90789 1.21684 0.92424 1.06748 1.00863 1.19047 0.91294 0.96093 0.86196 1.86064 1.37039 1.86508 1.15095 1.23426 0.97941 1.01922 0.84649 1.20518 1.01231 1.06059 0.90174 0.91526 0.91773 0.91778 0.92963 0.93102 0.89777 0.89234 0.96195 0.96167 0.92507 0.82985 0.81783 0.85084 0.82064 0.81707 0.86174 0.91108 0.91501 0.84206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.44 9.91 71.98 0.71 -2.73 16 2 C -0.15 -4.82 6.26 30.60 0.19 -4.63 16 3 C 0.12 4.24 5.26 86.38 0.45 4.69 16 4 N -0.99 -41.51 2.70 -519.83 -1.40 -42.92 16 5 C 0.26 13.20 5.41 85.63 0.46 13.67 16 6 C -0.55 -28.53 9.38 25.60 0.24 -28.29 16 7 H 0.08 3.67 7.81 -2.91 -0.02 3.65 16 8 C 0.01 0.60 5.46 84.66 0.46 1.07 16 9 N -0.93 -53.75 13.29 21.45 0.28 -53.46 16 10 Si 0.96 41.43 29.54 68.60 2.03 43.45 16 11 H -0.27 -11.40 7.11 99.48 0.71 -10.70 16 12 H -0.29 -12.41 7.11 99.48 0.71 -11.70 16 13 H -0.26 -10.50 7.11 99.48 0.71 -9.80 16 14 S 2.61 105.70 5.35 -56.49 -0.30 105.39 16 15 O -0.98 -40.35 16.75 -127.65 -2.14 -42.49 16 16 O -0.99 -48.26 16.53 -127.65 -2.11 -50.37 16 17 C -0.57 -18.56 6.30 71.24 0.45 -18.11 16 18 C -0.07 -2.05 5.14 -19.88 -0.10 -2.15 16 19 C -0.16 -4.86 9.70 22.28 0.22 -4.64 16 20 C -0.08 -1.73 10.04 22.26 0.22 -1.51 16 21 C -0.20 -4.16 9.04 22.37 0.20 -3.95 16 22 C 0.12 3.04 6.69 22.51 0.15 3.19 16 23 O -0.33 -7.49 10.50 -92.48 -0.97 -8.46 16 24 C 0.01 0.18 9.81 113.37 1.11 1.29 16 25 C -0.16 -4.68 9.64 22.37 0.22 -4.47 16 26 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 27 H 0.06 1.41 8.14 -2.39 -0.02 1.40 16 28 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 29 H 0.05 1.84 7.90 -2.39 -0.02 1.82 16 30 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 31 H 0.08 2.84 8.11 -2.39 -0.02 2.82 16 32 H 0.09 2.61 7.61 -2.39 -0.02 2.59 16 33 H 0.02 1.08 8.11 -2.39 -0.02 1.06 16 34 H 0.02 1.17 6.82 -2.38 -0.02 1.15 16 35 H 0.27 14.55 8.31 -92.71 -0.77 13.78 16 36 H 0.15 5.04 8.08 -2.39 -0.02 5.02 16 37 H 0.16 4.28 8.08 -2.39 -0.02 4.26 16 38 H 0.13 3.87 8.06 -2.91 -0.02 3.85 16 39 H 0.16 2.58 8.06 -2.91 -0.02 2.55 16 40 H 0.17 2.17 6.30 -2.91 -0.02 2.15 16 41 H 0.12 0.92 8.14 -2.39 -0.02 0.90 16 42 H 0.07 0.64 7.67 -2.39 -0.02 0.62 16 43 H 0.07 0.67 7.65 -2.39 -0.02 0.65 16 44 H 0.14 3.82 8.06 -2.91 -0.02 3.80 16 Total: -1.00 -72.24 381.35 1.35 -70.89 By element: Atomic # 1 Polarization: 23.57 SS G_CDS: 0.97 Total: 24.54 kcal Atomic # 6 Polarization: -51.58 SS G_CDS: 4.99 Total: -46.58 kcal Atomic # 7 Polarization: -95.26 SS G_CDS: -1.12 Total: -96.38 kcal Atomic # 8 Polarization: -96.10 SS G_CDS: -5.22 Total: -101.32 kcal Atomic # 14 Polarization: 41.43 SS G_CDS: 2.03 Total: 43.45 kcal Atomic # 16 Polarization: 105.70 SS G_CDS: -0.30 Total: 105.39 kcal Total: -72.24 1.35 -70.89 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001197367038.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.566 kcal (2) G-P(sol) polarization free energy of solvation -72.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.891 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds