Wall clock time and date at job start Tue Mar 31 2020 15:07:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47224 * 2 1 4 4 C 1.52999 * 109.47224 * 179.97438 * 3 2 1 5 5 N 1.46496 * 109.47076 * 179.97438 * 4 3 2 6 6 C 1.36939 * 120.00427 * 273.54308 * 5 4 3 7 7 H 1.08005 * 119.99360 * 333.69239 * 6 5 4 8 8 C 1.38803 * 120.00129 * 153.69489 * 6 5 4 9 9 N 1.31618 * 120.00151 * 358.07104 * 8 6 5 10 10 Si 1.86795 * 119.99999 * 178.07187 * 8 6 5 11 11 H 1.48494 * 109.47479 * 89.99869 * 10 8 6 12 12 H 1.48502 * 109.47428 * 209.99964 * 10 8 6 13 13 H 1.48500 * 109.47338 * 329.99870 * 10 8 6 14 14 S 1.65607 * 119.99818 * 93.54294 * 5 4 3 15 15 O 1.42099 * 106.40176 * 149.17166 * 14 5 4 16 16 O 1.42101 * 106.40259 * 16.25166 * 14 5 4 17 17 C 1.76199 * 107.21827 * 262.71544 * 14 5 4 18 18 C 1.38288 * 119.94600 * 17.14417 * 17 14 5 19 19 C 1.38123 * 120.05691 * 180.02562 * 18 17 14 20 20 C 1.38749 * 119.94678 * 359.97438 * 19 18 17 21 21 O 1.35894 * 120.05902 * 180.02562 * 20 19 18 22 22 C 1.42904 * 116.99637 * 0.02562 * 21 20 19 23 23 C 1.38714 * 119.88577 * 0.27206 * 20 19 18 24 24 C 1.38166 * 119.94330 * 359.49590 * 23 20 19 25 25 C 1.50704 * 119.97504 * 180.23203 * 24 23 20 26 26 H 1.09006 * 109.46894 * 59.99946 * 1 2 3 27 27 H 1.09000 * 109.47111 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47099 * 300.00556 * 1 2 3 29 29 H 1.09002 * 109.47151 * 240.00191 * 2 1 3 30 30 H 1.09000 * 109.46905 * 119.99606 * 2 1 3 31 31 H 1.08998 * 109.47537 * 59.99712 * 3 2 1 32 32 H 1.09006 * 109.47229 * 299.99849 * 3 2 1 33 33 H 1.09002 * 109.47151 * 60.00191 * 4 3 2 34 34 H 1.09000 * 109.46905 * 299.99606 * 4 3 2 35 35 H 0.97007 * 120.00013 * 179.97438 * 9 8 6 36 36 H 1.08007 * 119.96955 * 0.02562 * 18 17 14 37 37 H 1.08005 * 120.02463 * 179.97438 * 19 18 17 38 38 H 1.09007 * 109.46898 * 180.02562 * 22 21 20 39 39 H 1.08992 * 109.47070 * 299.99310 * 22 21 20 40 40 H 1.09000 * 109.47260 * 60.00148 * 22 21 20 41 41 H 1.08003 * 120.03093 * 179.72365 * 23 20 19 42 42 H 1.09003 * 109.47154 * 273.53547 * 25 24 23 43 43 H 1.09000 * 109.46721 * 33.53280 * 25 24 23 44 44 H 1.09001 * 109.47619 * 153.53071 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 7 4.0583 2.8237 0.0000 6 6 4.2180 3.4930 -1.1839 7 1 4.4047 2.9427 -2.0943 8 6 4.1398 4.8785 -1.2139 9 7 3.8746 5.5468 -0.1114 10 14 4.4110 5.7947 -2.8190 11 1 3.1135 5.9543 -3.5233 12 1 4.9872 7.1334 -2.5336 13 1 5.3481 5.0251 -3.6761 14 16 4.4173 3.5756 1.4312 15 8 5.4657 4.4929 1.1506 16 8 4.5233 2.5492 2.4082 17 6 3.0147 4.5443 1.8776 18 6 1.7898 4.2999 1.2841 19 6 0.6890 5.0582 1.6319 20 6 0.8127 6.0655 2.5780 21 8 -0.2689 6.8126 2.9222 22 6 -1.5032 6.5059 2.2705 23 6 2.0436 6.3121 3.1681 24 6 3.1407 5.5476 2.8203 25 6 4.4772 5.8114 3.4648 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5139 0.8899 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.6767 1.9564 0.8899 32 1 1.6767 1.9564 -0.8900 33 1 3.9337 0.9285 -0.8891 34 1 3.9329 0.9288 0.8909 35 1 3.8204 6.5151 -0.1323 36 1 1.6939 3.5154 0.5480 37 1 -0.2673 4.8671 1.1677 38 1 -2.2828 7.1747 2.6354 39 1 -1.3880 6.6360 1.1945 40 1 -1.7802 5.4736 2.4842 41 1 2.1436 7.0985 3.9015 42 1 5.0017 6.5884 2.9086 43 1 4.3260 6.1398 4.4931 44 1 5.0703 4.8969 3.4589 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001198935041.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:07:04 Heat of formation + Delta-G solvation = -69.500963 kcal Electronic energy + Delta-G solvation = -28148.080785 eV Core-core repulsion = 24386.843472 eV Total energy + Delta-G solvation = -3761.237313 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 1.75 seconds Orbital eigenvalues (eV) -39.55898 -37.13399 -36.51812 -35.82257 -34.29432 -33.91662 -31.83181 -31.47197 -30.02202 -28.06100 -27.19330 -26.08648 -24.66369 -22.38733 -22.29100 -21.15402 -20.27297 -18.91063 -17.29454 -17.23556 -16.22270 -15.88417 -15.61148 -15.42431 -15.06807 -14.56989 -14.08012 -13.92118 -13.65865 -13.45988 -13.33243 -12.95208 -12.69164 -12.63218 -12.51752 -12.11381 -11.85152 -11.73521 -11.66846 -11.56086 -11.41775 -11.09538 -11.04608 -10.83449 -10.74324 -10.61612 -10.45428 -10.39171 -10.25980 -10.07891 -9.95300 -9.64832 -9.47188 -9.08066 -8.08884 -7.93948 -7.67461 -6.14922 -3.92105 1.93545 2.10260 2.12076 3.24357 3.30887 3.35210 3.60895 4.17216 4.33362 4.60257 5.02297 5.15351 5.19948 5.29375 5.29688 5.34729 5.40592 5.44058 5.54196 5.57497 5.73347 5.76338 5.79998 6.03687 6.05579 6.08621 6.12321 6.17202 6.21423 6.33837 6.39835 6.45113 6.47389 6.50069 6.66244 6.69134 6.85278 6.87576 6.98862 7.12882 7.28421 7.41496 7.58991 7.91648 8.38984 8.98733 9.42989 10.75549 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.008847 B = 0.007183 C = 0.005891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3164.025054 B = 3897.286571 C = 4752.020822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.122 4.122 3 C -0.151 4.151 4 C 0.118 3.882 5 N -0.872 5.872 6 C -0.299 4.299 7 H 0.091 0.909 8 C 0.018 3.982 9 N -0.890 5.890 10 Si 0.944 3.056 11 H -0.284 1.284 12 H -0.284 1.284 13 H -0.274 1.274 14 S 2.722 3.278 15 O -0.940 6.940 16 O -1.028 7.028 17 C -0.558 4.558 18 C 0.000 4.000 19 C -0.228 4.228 20 C 0.131 3.869 21 O -0.325 6.325 22 C 0.031 3.969 23 C -0.168 4.168 24 C 0.021 3.979 25 C -0.122 4.122 26 H 0.052 0.948 27 H 0.048 0.952 28 H 0.052 0.948 29 H 0.060 0.940 30 H 0.061 0.939 31 H 0.063 0.937 32 H 0.073 0.927 33 H 0.069 0.931 34 H 0.072 0.928 35 H 0.285 0.715 36 H 0.140 0.860 37 H 0.116 0.884 38 H 0.092 0.908 39 H 0.052 0.948 40 H 0.051 0.949 41 H 0.120 0.880 42 H 0.090 0.910 43 H 0.067 0.933 44 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.167 -2.799 2.270 8.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.161 4.161 3 C -0.190 4.190 4 C -0.009 4.009 5 N -0.703 5.703 6 C -0.429 4.429 7 H 0.109 0.891 8 C -0.184 4.184 9 N -0.534 5.534 10 Si 0.772 3.228 11 H -0.211 1.211 12 H -0.210 1.210 13 H -0.199 1.199 14 S 2.811 3.189 15 O -0.930 6.930 16 O -1.018 7.018 17 C -0.644 4.644 18 C -0.019 4.019 19 C -0.248 4.248 20 C 0.087 3.913 21 O -0.239 6.239 22 C -0.065 4.065 23 C -0.188 4.188 24 C 0.019 3.981 25 C -0.179 4.179 26 H 0.071 0.929 27 H 0.067 0.933 28 H 0.071 0.929 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.082 0.918 32 H 0.091 0.909 33 H 0.087 0.913 34 H 0.091 0.909 35 H 0.098 0.902 36 H 0.158 0.842 37 H 0.134 0.866 38 H 0.110 0.890 39 H 0.071 0.929 40 H 0.070 0.930 41 H 0.138 0.862 42 H 0.109 0.891 43 H 0.085 0.915 44 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -7.387 -2.509 2.894 8.321 hybrid contribution -1.061 0.950 -1.250 1.895 sum -8.448 -1.560 1.644 8.747 Atomic orbital electron populations 1.21775 0.96440 1.00917 1.01728 1.21487 0.95369 0.97399 1.01827 1.22399 0.97891 0.96129 1.02597 1.21257 0.92520 0.85006 1.02126 1.53079 1.77878 1.18941 1.20361 1.18966 1.47862 0.89007 0.87042 0.89119 1.25223 0.97268 0.96791 0.99090 1.68873 1.49255 1.09950 1.25286 0.85627 0.77804 0.78845 0.80497 1.21065 1.20981 1.19928 1.00889 0.74614 0.71988 0.71363 1.93481 1.52969 1.63367 1.83134 1.93452 1.87435 1.59342 1.61523 1.30461 1.16879 1.13191 1.03902 1.20827 0.90444 0.96608 0.94014 1.21040 0.99991 1.00707 1.03038 1.18899 0.86721 0.91043 0.94679 1.85993 1.16894 1.57201 1.63827 1.22936 0.84443 1.01355 0.97716 1.19999 0.90295 1.03468 1.04998 1.18879 0.94134 0.92064 0.93043 1.20966 0.93723 1.03151 1.00075 0.92883 0.93273 0.92903 0.92079 0.92052 0.91847 0.90853 0.91293 0.90937 0.90157 0.84249 0.86589 0.88952 0.92898 0.92988 0.86159 0.89110 0.91458 0.92550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 41. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.79 9.91 37.16 0.37 -1.42 16 2 C -0.12 -1.65 5.93 -26.73 -0.16 -1.81 16 3 C -0.15 -2.54 4.04 -26.73 -0.11 -2.65 16 4 C 0.12 2.29 5.59 -4.04 -0.02 2.27 16 5 N -0.87 -20.39 2.17 -59.91 -0.13 -20.52 16 6 C -0.30 -7.35 9.48 -15.06 -0.14 -7.49 16 7 H 0.09 2.13 7.83 -52.48 -0.41 1.72 16 8 C 0.02 0.45 4.90 -17.43 -0.09 0.36 16 9 N -0.89 -23.00 6.21 55.49 0.34 -22.65 16 10 Si 0.94 20.79 29.55 -169.99 -5.02 15.77 16 11 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 12 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 13 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 14 S 2.72 67.63 3.65 -107.50 -0.39 67.24 16 15 O -0.94 -25.80 13.36 -57.17 -0.76 -26.56 16 16 O -1.03 -26.07 16.39 -57.17 -0.94 -27.01 16 17 C -0.56 -12.86 3.35 -39.56 -0.13 -12.99 16 18 C 0.00 0.00 8.04 -39.61 -0.32 -0.32 16 19 C -0.23 -4.38 9.04 -39.43 -0.36 -4.74 16 20 C 0.13 2.52 6.69 -39.22 -0.26 2.26 16 21 O -0.33 -5.47 10.50 -19.41 -0.20 -5.67 16 22 C 0.03 0.38 9.81 101.05 0.99 1.37 16 23 C -0.17 -3.32 9.66 -39.43 -0.38 -3.70 16 24 C 0.02 0.46 5.79 -104.64 -0.61 -0.15 16 25 C -0.12 -2.40 8.85 36.01 0.32 -2.08 16 26 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 29 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 30 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.06 1.11 5.77 -51.93 -0.30 0.81 16 32 H 0.07 1.26 8.01 -51.93 -0.42 0.85 16 33 H 0.07 1.22 8.07 -51.93 -0.42 0.80 16 34 H 0.07 1.39 6.91 -51.93 -0.36 1.03 16 35 H 0.29 7.39 8.31 -40.82 -0.34 7.05 16 36 H 0.14 2.88 3.72 -52.48 -0.20 2.68 16 37 H 0.12 1.88 6.30 -52.48 -0.33 1.55 16 38 H 0.09 0.86 8.14 -51.92 -0.42 0.43 16 39 H 0.05 0.63 7.66 -51.93 -0.40 0.24 16 40 H 0.05 0.58 7.66 -51.93 -0.40 0.18 16 41 H 0.12 2.08 8.06 -52.48 -0.42 1.66 16 42 H 0.09 1.79 8.14 -51.93 -0.42 1.37 16 43 H 0.07 1.06 8.11 -51.93 -0.42 0.64 16 44 H 0.06 1.17 6.20 -51.93 -0.32 0.85 16 LS Contribution 353.84 15.07 5.33 5.33 Total: -1.00 -30.26 353.84 -9.16 -39.42 By element: Atomic # 1 Polarization: 12.24 SS G_CDS: -6.49 Total: 5.75 kcal Atomic # 6 Polarization: -30.19 SS G_CDS: -0.89 Total: -31.08 kcal Atomic # 7 Polarization: -43.39 SS G_CDS: 0.21 Total: -43.18 kcal Atomic # 8 Polarization: -57.33 SS G_CDS: -1.90 Total: -59.24 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.77 kcal Atomic # 16 Polarization: 67.63 SS G_CDS: -0.39 Total: 67.24 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -30.26 -9.16 -39.42 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001198935041.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.084 kcal (2) G-P(sol) polarization free energy of solvation -30.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.417 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.75 seconds