Wall clock time and date at job start Tue Mar 31 2020 15:07:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47224 * 2 1 4 4 C 1.52999 * 109.47224 * 179.97438 * 3 2 1 5 5 N 1.46496 * 109.47076 * 179.97438 * 4 3 2 6 6 C 1.36939 * 120.00427 * 273.54308 * 5 4 3 7 7 H 1.08005 * 119.99360 * 333.69239 * 6 5 4 8 8 C 1.38803 * 120.00129 * 153.69489 * 6 5 4 9 9 N 1.31618 * 120.00151 * 358.07104 * 8 6 5 10 10 Si 1.86795 * 119.99999 * 178.07187 * 8 6 5 11 11 H 1.48494 * 109.47479 * 89.99869 * 10 8 6 12 12 H 1.48502 * 109.47428 * 209.99964 * 10 8 6 13 13 H 1.48500 * 109.47338 * 329.99870 * 10 8 6 14 14 S 1.65607 * 119.99818 * 93.54294 * 5 4 3 15 15 O 1.42099 * 106.40176 * 149.17166 * 14 5 4 16 16 O 1.42101 * 106.40259 * 16.25166 * 14 5 4 17 17 C 1.76199 * 107.21827 * 262.71544 * 14 5 4 18 18 C 1.38288 * 119.94600 * 17.14417 * 17 14 5 19 19 C 1.38123 * 120.05691 * 180.02562 * 18 17 14 20 20 C 1.38749 * 119.94678 * 359.97438 * 19 18 17 21 21 O 1.35894 * 120.05902 * 180.02562 * 20 19 18 22 22 C 1.42904 * 116.99637 * 0.02562 * 21 20 19 23 23 C 1.38714 * 119.88577 * 0.27206 * 20 19 18 24 24 C 1.38166 * 119.94330 * 359.49590 * 23 20 19 25 25 C 1.50704 * 119.97504 * 180.23203 * 24 23 20 26 26 H 1.09006 * 109.46894 * 59.99946 * 1 2 3 27 27 H 1.09000 * 109.47111 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47099 * 300.00556 * 1 2 3 29 29 H 1.09002 * 109.47151 * 240.00191 * 2 1 3 30 30 H 1.09000 * 109.46905 * 119.99606 * 2 1 3 31 31 H 1.08998 * 109.47537 * 59.99712 * 3 2 1 32 32 H 1.09006 * 109.47229 * 299.99849 * 3 2 1 33 33 H 1.09002 * 109.47151 * 60.00191 * 4 3 2 34 34 H 1.09000 * 109.46905 * 299.99606 * 4 3 2 35 35 H 0.97007 * 120.00013 * 179.97438 * 9 8 6 36 36 H 1.08007 * 119.96955 * 0.02562 * 18 17 14 37 37 H 1.08005 * 120.02463 * 179.97438 * 19 18 17 38 38 H 1.09007 * 109.46898 * 180.02562 * 22 21 20 39 39 H 1.08992 * 109.47070 * 299.99310 * 22 21 20 40 40 H 1.09000 * 109.47260 * 60.00148 * 22 21 20 41 41 H 1.08003 * 120.03093 * 179.72365 * 23 20 19 42 42 H 1.09003 * 109.47154 * 273.53547 * 25 24 23 43 43 H 1.09000 * 109.46721 * 33.53280 * 25 24 23 44 44 H 1.09001 * 109.47619 * 153.53071 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 7 4.0583 2.8237 0.0000 6 6 4.2180 3.4930 -1.1839 7 1 4.4047 2.9427 -2.0943 8 6 4.1398 4.8785 -1.2139 9 7 3.8746 5.5468 -0.1114 10 14 4.4110 5.7947 -2.8190 11 1 3.1135 5.9543 -3.5233 12 1 4.9872 7.1334 -2.5336 13 1 5.3481 5.0251 -3.6761 14 16 4.4173 3.5756 1.4312 15 8 5.4657 4.4929 1.1506 16 8 4.5233 2.5492 2.4082 17 6 3.0147 4.5443 1.8776 18 6 1.7898 4.2999 1.2841 19 6 0.6890 5.0582 1.6319 20 6 0.8127 6.0655 2.5780 21 8 -0.2689 6.8126 2.9222 22 6 -1.5032 6.5059 2.2705 23 6 2.0436 6.3121 3.1681 24 6 3.1407 5.5476 2.8203 25 6 4.4772 5.8114 3.4648 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5139 0.8899 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.6767 1.9564 0.8899 32 1 1.6767 1.9564 -0.8900 33 1 3.9337 0.9285 -0.8891 34 1 3.9329 0.9288 0.8909 35 1 3.8204 6.5151 -0.1323 36 1 1.6939 3.5154 0.5480 37 1 -0.2673 4.8671 1.1677 38 1 -2.2828 7.1747 2.6354 39 1 -1.3880 6.6360 1.1945 40 1 -1.7802 5.4736 2.4842 41 1 2.1436 7.0985 3.9015 42 1 5.0017 6.5884 2.9086 43 1 4.3260 6.1398 4.4931 44 1 5.0703 4.8969 3.4589 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001198935041.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:07:02 Heat of formation + Delta-G solvation = -87.300615 kcal Electronic energy + Delta-G solvation = -28148.852636 eV Core-core repulsion = 24386.843472 eV Total energy + Delta-G solvation = -3762.009164 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 1.76 seconds Orbital eigenvalues (eV) -40.97591 -38.58067 -38.08757 -37.75596 -36.23516 -35.35579 -33.40247 -33.18231 -31.48288 -29.46902 -28.47857 -27.46854 -26.38873 -23.92076 -23.74888 -22.51704 -21.65029 -20.75358 -19.04245 -18.63720 -17.93814 -17.62725 -17.16590 -16.63143 -16.54580 -16.14275 -15.83402 -15.38838 -15.19228 -14.91893 -14.76828 -14.50179 -14.20204 -14.09886 -13.87203 -13.62693 -13.43694 -13.20040 -13.01447 -12.96429 -12.93274 -12.74059 -12.62354 -12.49137 -12.28621 -12.14602 -12.01323 -11.92322 -11.71951 -11.62004 -11.46429 -11.24967 -11.18098 -10.86533 -9.74700 -9.57817 -9.32882 -7.97651 -5.82799 0.20261 0.41562 0.54611 1.49149 1.53245 1.61517 2.35919 2.39541 2.70974 2.85287 3.15711 3.40349 3.87956 3.95015 4.07776 4.16090 4.20117 4.29111 4.32996 4.38789 4.38882 4.47638 4.52094 4.57928 4.69372 4.73998 4.77303 4.86565 4.88429 4.96366 4.97308 5.06945 5.15297 5.18590 5.31162 5.36536 5.42047 5.44960 5.53148 5.55580 5.65144 5.66131 5.89618 6.46250 6.51061 7.15399 7.53218 8.83899 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.008847 B = 0.007183 C = 0.005891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3164.025054 B = 3897.286571 C = 4752.020822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.119 4.119 3 C -0.143 4.143 4 C 0.110 3.890 5 N -0.880 5.880 6 C -0.305 4.305 7 H 0.099 0.901 8 C -0.026 4.026 9 N -0.896 5.896 10 Si 0.993 3.007 11 H -0.273 1.273 12 H -0.297 1.297 13 H -0.268 1.268 14 S 2.714 3.286 15 O -0.981 6.981 16 O -1.049 7.049 17 C -0.577 4.577 18 C -0.012 4.012 19 C -0.230 4.230 20 C 0.138 3.862 21 O -0.331 6.331 22 C 0.019 3.981 23 C -0.176 4.176 24 C 0.004 3.996 25 C -0.124 4.124 26 H 0.055 0.945 27 H 0.068 0.932 28 H 0.049 0.951 29 H 0.074 0.926 30 H 0.063 0.937 31 H 0.052 0.948 32 H 0.069 0.931 33 H 0.085 0.915 34 H 0.067 0.933 35 H 0.276 0.724 36 H 0.142 0.858 37 H 0.146 0.854 38 H 0.125 0.875 39 H 0.056 0.944 40 H 0.064 0.936 41 H 0.144 0.856 42 H 0.083 0.917 43 H 0.105 0.895 44 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.706 -2.747 1.816 11.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.158 4.158 3 C -0.182 4.182 4 C -0.016 4.016 5 N -0.712 5.712 6 C -0.436 4.436 7 H 0.117 0.883 8 C -0.226 4.226 9 N -0.541 5.541 10 Si 0.819 3.181 11 H -0.198 1.198 12 H -0.224 1.224 13 H -0.192 1.192 14 S 2.809 3.191 15 O -0.970 6.970 16 O -1.039 7.039 17 C -0.667 4.667 18 C -0.031 4.031 19 C -0.249 4.249 20 C 0.093 3.907 21 O -0.245 6.245 22 C -0.076 4.076 23 C -0.196 4.196 24 C 0.002 3.998 25 C -0.180 4.180 26 H 0.074 0.926 27 H 0.087 0.913 28 H 0.068 0.932 29 H 0.093 0.907 30 H 0.082 0.918 31 H 0.071 0.929 32 H 0.087 0.913 33 H 0.103 0.897 34 H 0.086 0.914 35 H 0.088 0.912 36 H 0.160 0.840 37 H 0.164 0.836 38 H 0.144 0.856 39 H 0.074 0.926 40 H 0.083 0.917 41 H 0.162 0.838 42 H 0.102 0.898 43 H 0.124 0.876 44 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -9.917 -2.512 2.449 10.519 hybrid contribution -0.361 0.952 -1.064 1.473 sum -10.277 -1.560 1.385 10.487 Atomic orbital electron populations 1.21758 0.94913 1.02245 1.01735 1.21481 0.96686 0.94952 1.02646 1.22288 0.95716 0.98409 1.01818 1.21496 0.94510 0.82987 1.02623 1.52965 1.78414 1.20383 1.19423 1.19223 1.47650 0.89338 0.87357 0.88335 1.25954 0.97552 0.97633 1.01457 1.69104 1.49462 1.09210 1.26287 0.84878 0.78099 0.77100 0.77992 1.19847 1.22368 1.19238 1.00843 0.74884 0.71721 0.71618 1.93419 1.55518 1.64353 1.83735 1.93402 1.88017 1.60024 1.62424 1.30053 1.16472 1.14257 1.05877 1.20984 0.90642 0.97252 0.94174 1.21324 1.00568 1.00104 1.02924 1.19020 0.87430 0.90574 0.93709 1.86001 1.17609 1.56668 1.64189 1.23333 0.83078 1.03214 0.97938 1.20254 0.90142 1.03658 1.05502 1.19160 0.95378 0.92162 0.93100 1.21012 0.92816 1.01983 1.02233 0.92606 0.91294 0.93212 0.90739 0.91807 0.92929 0.91282 0.89713 0.91449 0.91222 0.84046 0.83597 0.85648 0.92564 0.91712 0.83833 0.89848 0.87615 0.94602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 39. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.17 9.91 71.98 0.71 -2.46 16 2 C -0.12 -3.00 5.93 30.59 0.18 -2.82 16 3 C -0.14 -4.72 4.04 30.59 0.12 -4.60 16 4 C 0.11 4.28 5.59 86.38 0.48 4.76 16 5 N -0.88 -41.89 2.17 -343.46 -0.75 -42.64 16 6 C -0.30 -15.09 9.48 84.03 0.80 -14.30 16 7 H 0.10 4.60 7.83 -2.91 -0.02 4.58 16 8 C -0.03 -1.33 4.90 84.86 0.42 -0.92 16 9 N -0.90 -47.13 6.21 21.65 0.13 -47.00 16 10 Si 0.99 42.47 29.55 68.60 2.03 44.50 16 11 H -0.27 -11.06 7.11 99.48 0.71 -10.36 16 12 H -0.30 -13.24 7.11 99.48 0.71 -12.53 16 13 H -0.27 -11.04 7.11 99.48 0.71 -10.34 16 14 S 2.71 139.49 3.65 -56.49 -0.21 139.28 16 15 O -0.98 -56.19 13.36 -128.00 -1.71 -57.90 16 16 O -1.05 -55.35 16.39 -128.00 -2.10 -57.45 16 17 C -0.58 -27.00 3.35 22.28 0.07 -26.92 16 18 C -0.01 -0.49 8.04 22.25 0.18 -0.31 16 19 C -0.23 -8.43 9.04 22.36 0.20 -8.22 16 20 C 0.14 5.03 6.69 22.51 0.15 5.18 16 21 O -0.33 -10.12 10.50 -92.36 -0.97 -11.09 16 22 C 0.02 0.39 9.81 113.37 1.11 1.50 16 23 C -0.18 -6.73 9.66 22.37 0.22 -6.52 16 24 C 0.00 0.19 5.79 -19.88 -0.12 0.07 16 25 C -0.12 -4.95 8.85 71.24 0.63 -4.31 16 26 H 0.05 1.15 8.14 -2.38 -0.02 1.13 16 27 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 28 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 29 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 30 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 31 H 0.05 1.84 5.77 -2.39 -0.01 1.83 16 32 H 0.07 2.32 8.01 -2.38 -0.02 2.30 16 33 H 0.08 2.95 8.07 -2.39 -0.02 2.93 16 34 H 0.07 2.65 6.91 -2.39 -0.02 2.63 16 35 H 0.28 14.59 8.31 -92.70 -0.77 13.81 16 36 H 0.14 5.84 3.72 -2.91 -0.01 5.83 16 37 H 0.15 4.32 6.30 -2.91 -0.02 4.30 16 38 H 0.13 1.79 8.14 -2.38 -0.02 1.77 16 39 H 0.06 1.15 7.66 -2.39 -0.02 1.13 16 40 H 0.06 1.20 7.66 -2.39 -0.02 1.18 16 41 H 0.14 4.67 8.06 -2.91 -0.02 4.64 16 42 H 0.08 3.40 8.14 -2.39 -0.02 3.38 16 43 H 0.11 3.25 8.11 -2.39 -0.02 3.23 16 44 H 0.03 1.54 6.20 -2.39 -0.01 1.53 16 Total: -1.00 -66.34 353.84 2.59 -63.74 By element: Atomic # 1 Polarization: 27.42 SS G_CDS: 1.00 Total: 28.42 kcal Atomic # 6 Polarization: -65.03 SS G_CDS: 5.16 Total: -59.86 kcal Atomic # 7 Polarization: -89.02 SS G_CDS: -0.61 Total: -89.63 kcal Atomic # 8 Polarization: -121.67 SS G_CDS: -4.78 Total: -126.44 kcal Atomic # 14 Polarization: 42.47 SS G_CDS: 2.03 Total: 44.50 kcal Atomic # 16 Polarization: 139.49 SS G_CDS: -0.21 Total: 139.28 kcal Total: -66.34 2.59 -63.74 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001198935041.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.559 kcal (2) G-P(sol) polarization free energy of solvation -66.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.741 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.76 seconds