Wall clock time and date at job start Tue Mar 31 2020 14:29:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52994 * 110.50980 * 2 1 4 4 O 1.43982 * 110.56886 * 237.07803 * 2 1 3 5 5 C 1.36625 * 105.47609 * 268.58399 * 4 2 1 6 6 C 1.38550 * 131.43854 * 162.71073 * 5 4 2 7 7 C 1.38174 * 120.12046 * 180.02562 * 6 5 4 8 8 C 1.38896 * 120.06922 * 0.02562 * 7 6 5 9 9 N 1.39899 * 120.01058 * 179.97438 * 8 7 6 10 10 C 1.39759 * 120.00168 * 355.25812 * 9 8 7 11 11 C 1.38783 * 120.11231 * 254.85475 * 10 9 8 12 12 C 1.38181 * 119.99300 * 180.27540 * 11 10 9 13 13 C 1.38351 * 120.20687 * 359.70722 * 12 11 10 14 14 C 1.38175 * 120.21526 * 0.02562 * 13 12 11 15 15 C 1.38725 * 120.00910 * 359.97438 * 14 13 12 16 16 O 1.35781 * 120.10484 * 180.02562 * 15 14 13 17 17 C 1.34800 * 116.99979 * 354.34440 * 16 15 14 18 18 H 1.07999 * 120.00505 * 5.06872 * 17 16 15 19 19 C 1.38620 * 120.00068 * 185.07333 * 17 16 15 20 20 N 1.31582 * 119.99920 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 120.00385 * 179.97438 * 19 17 16 22 22 H 1.48504 * 109.46694 * 59.99654 * 21 19 17 23 23 H 1.48500 * 109.47423 * 179.97438 * 21 19 17 24 24 H 1.48502 * 109.47029 * 300.00146 * 21 19 17 25 25 C 1.38849 * 119.97572 * 0.25479 * 8 7 6 26 26 C 1.38490 * 119.97454 * 359.44150 * 25 8 7 27 27 O 1.36517 * 131.45141 * 180.20374 * 26 25 8 28 28 H 1.09001 * 109.46964 * 297.93637 * 1 2 3 29 29 H 1.08993 * 109.47389 * 57.94157 * 1 2 3 30 30 H 1.09003 * 109.46942 * 177.94556 * 1 2 3 31 31 H 1.08999 * 109.47045 * 182.06212 * 3 2 1 32 32 H 1.09008 * 109.47043 * 302.05680 * 3 2 1 33 33 H 1.08997 * 109.47604 * 62.05645 * 3 2 1 34 34 H 1.07997 * 119.94185 * 359.97438 * 6 5 4 35 35 H 1.08008 * 119.96551 * 180.02562 * 7 6 5 36 36 H 0.96999 * 119.99521 * 175.26188 * 9 8 7 37 37 H 1.08000 * 120.00355 * 0.02562 * 11 10 9 38 38 H 1.08004 * 119.89447 * 179.72343 * 12 11 10 39 39 H 1.08005 * 119.89242 * 180.02562 * 13 12 11 40 40 H 1.07998 * 119.99617 * 180.02562 * 14 13 12 41 41 H 0.96997 * 120.00000 * 180.02562 * 20 19 17 42 42 H 1.08000 * 120.00992 * 179.72952 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0661 1.4330 0.0000 4 8 2.0359 -0.7327 -1.1316 5 6 2.1945 -2.0169 -0.6931 6 6 2.3416 -3.2096 -1.3825 7 6 2.4877 -4.3968 -0.6908 8 6 2.4868 -4.3977 0.6981 9 7 2.6342 -5.6005 1.3972 10 6 2.6829 -6.8117 0.7015 11 6 1.5868 -7.6630 0.7083 12 6 1.6396 -8.8625 0.0243 13 6 2.7807 -9.2162 -0.6735 14 6 3.8749 -8.3726 -0.6905 15 6 3.8316 -7.1662 -0.0070 16 8 4.9056 -6.3356 -0.0229 17 6 6.0234 -6.7919 -0.6222 18 1 6.0124 -7.7434 -1.1330 19 6 7.1873 -6.0400 -0.5828 20 7 7.2008 -4.8806 0.0392 21 14 8.7367 -6.6727 -1.4126 22 1 8.4798 -6.8606 -2.8632 23 1 9.8340 -5.6894 -1.2280 24 1 9.1277 -7.9710 -0.8070 25 6 2.3337 -3.2051 1.3925 26 6 2.1936 -2.0141 0.6997 27 8 2.0353 -0.7295 1.1336 28 1 -0.3633 0.4815 0.9079 29 1 -0.3634 0.5454 -0.8709 30 1 -0.3633 -1.0270 -0.0368 31 1 3.1553 1.4134 -0.0370 32 1 1.6825 1.9644 -0.8710 33 1 1.7424 1.9421 0.9078 34 1 2.3413 -3.2116 -2.4624 35 1 2.6026 -5.3251 -1.2308 36 1 2.7027 -5.5938 2.3648 37 1 0.6942 -7.3898 1.2514 38 1 0.7873 -9.5258 0.0343 39 1 2.8163 -10.1548 -1.2067 40 1 4.7637 -8.6521 -1.2368 41 1 8.0151 -4.3542 0.0664 42 1 2.3286 -3.2057 2.4725 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001212600509.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:29:19 Heat of formation + Delta-G solvation = -25.622778 kcal Electronic energy + Delta-G solvation = -27603.226846 eV Core-core repulsion = 23708.448282 eV Total energy + Delta-G solvation = -3894.778564 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.130 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.85466 -39.53341 -37.82190 -36.44945 -35.78696 -34.43339 -32.41599 -32.29125 -30.27146 -29.32782 -28.47317 -27.68411 -26.76084 -25.37021 -22.74294 -22.29808 -21.66215 -21.53604 -20.87699 -18.02113 -17.99347 -17.42312 -16.98151 -16.43662 -16.04962 -15.36202 -14.94483 -14.72705 -14.61428 -14.37065 -13.90068 -13.66388 -13.47556 -13.34708 -13.16629 -12.92476 -12.85352 -12.59114 -12.44260 -12.34563 -12.23034 -12.03993 -11.94001 -11.73383 -11.40182 -11.17418 -11.02988 -10.90397 -10.70464 -10.61750 -10.49037 -9.52958 -9.12460 -8.87837 -8.26148 -8.07439 -7.32862 -6.67087 -6.47327 -4.06870 1.77214 1.85373 2.05090 2.27245 3.08538 3.11243 3.11924 3.15170 3.62316 3.92186 4.03386 4.27106 4.44385 4.59811 4.64044 5.02752 5.06157 5.16206 5.27326 5.33131 5.41242 5.47338 5.58354 5.65338 5.65805 5.71481 5.75003 5.81582 5.97058 5.99241 6.10424 6.16491 6.31498 6.50397 6.59442 6.61515 6.70708 6.81463 6.96348 6.98997 7.05222 7.26142 7.29056 7.53823 7.65479 7.92522 8.05557 8.30281 8.96349 9.64031 10.68331 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.011192 B = 0.004247 C = 0.003319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2501.156872 B = 6591.081012 C = 8435.070479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.255 3.745 3 C -0.144 4.144 4 O -0.305 6.305 5 C -0.039 4.039 6 C -0.051 4.051 7 C -0.158 4.158 8 C 0.249 3.751 9 N -0.672 5.672 10 C 0.053 3.947 11 C -0.073 4.073 12 C -0.212 4.212 13 C -0.069 4.069 14 C -0.233 4.233 15 C 0.148 3.852 16 O -0.155 6.155 17 C -0.397 4.397 18 H 0.091 0.909 19 C 0.044 3.956 20 N -0.850 5.850 21 Si 0.938 3.062 22 H -0.269 1.269 23 H -0.278 1.278 24 H -0.270 1.270 25 C -0.180 4.180 26 C 0.074 3.926 27 O -0.305 6.305 28 H 0.079 0.921 29 H 0.080 0.920 30 H 0.069 0.931 31 H 0.076 0.924 32 H 0.083 0.917 33 H 0.083 0.917 34 H 0.127 0.873 35 H 0.133 0.867 36 H 0.401 0.599 37 H 0.114 0.886 38 H 0.109 0.891 39 H 0.109 0.891 40 H 0.129 0.871 41 H 0.271 0.729 42 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.690 4.381 0.292 12.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.180 3.820 3 C -0.201 4.201 4 O -0.222 6.222 5 C -0.084 4.084 6 C -0.071 4.071 7 C -0.181 4.181 8 C 0.146 3.854 9 N -0.296 5.296 10 C -0.041 4.041 11 C -0.093 4.093 12 C -0.231 4.231 13 C -0.088 4.088 14 C -0.253 4.253 15 C 0.091 3.909 16 O -0.056 6.056 17 C -0.474 4.474 18 H 0.109 0.891 19 C -0.162 4.162 20 N -0.484 5.484 21 Si 0.763 3.237 22 H -0.194 1.194 23 H -0.203 1.203 24 H -0.195 1.195 25 C -0.203 4.203 26 C 0.029 3.971 27 O -0.222 6.222 28 H 0.098 0.902 29 H 0.099 0.901 30 H 0.088 0.912 31 H 0.095 0.905 32 H 0.102 0.898 33 H 0.102 0.898 34 H 0.145 0.855 35 H 0.151 0.849 36 H 0.237 0.763 37 H 0.132 0.868 38 H 0.127 0.873 39 H 0.127 0.873 40 H 0.147 0.853 41 H 0.081 0.919 42 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -11.370 4.918 0.328 12.392 hybrid contribution 0.959 -0.337 -0.071 1.019 sum -10.411 4.581 0.257 11.377 Atomic orbital electron populations 1.22527 0.93631 1.04132 1.03642 1.24290 0.93064 0.91748 0.72882 1.21883 1.03240 0.91346 1.03676 1.87359 1.82347 1.17460 1.35062 1.19379 1.12100 0.85462 0.91446 1.19700 0.99955 0.87842 0.99592 1.20389 1.07533 0.97898 0.92247 1.17269 0.91948 0.85155 0.91063 1.41387 1.79769 1.01057 1.07423 1.16569 0.93270 0.89358 1.04877 1.20865 0.95770 0.94191 0.98443 1.20471 0.98975 0.98355 1.05326 1.20822 0.92888 0.98007 0.97054 1.21115 1.00673 0.96388 1.07110 1.19729 0.88554 0.89429 0.93188 1.84046 1.17404 1.37287 1.66899 1.21284 0.86197 1.06168 1.33702 0.89143 1.25269 0.98434 0.95465 0.97012 1.70055 1.28713 1.10894 1.38701 0.85827 0.79856 0.78575 0.79466 1.19443 1.20265 1.19506 1.19132 1.14110 0.87630 0.99426 1.19203 1.01641 0.84797 0.91461 1.87346 1.81553 1.17356 1.35902 0.90200 0.90104 0.91177 0.90519 0.89785 0.89819 0.85507 0.84907 0.76332 0.86771 0.87325 0.87322 0.85297 0.91905 0.85530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.06 9.19 37.16 0.34 -1.72 16 2 C 0.26 3.69 1.61 -26.73 -0.04 3.65 16 3 C -0.14 -1.58 9.39 37.15 0.35 -1.23 16 4 O -0.30 -5.37 10.82 -46.10 -0.50 -5.87 16 5 C -0.04 -0.74 6.94 -39.08 -0.27 -1.01 16 6 C -0.05 -0.98 10.05 -39.49 -0.40 -1.37 16 7 C -0.16 -3.19 8.95 -39.36 -0.35 -3.55 16 8 C 0.25 4.88 6.50 -83.71 -0.54 4.34 16 9 N -0.67 -12.60 5.18 -8.26 -0.04 -12.65 16 10 C 0.05 1.04 4.88 -83.55 -0.41 0.63 16 11 C -0.07 -1.23 9.97 -39.40 -0.39 -1.62 16 12 C -0.21 -3.40 10.04 -39.56 -0.40 -3.79 16 13 C -0.07 -1.18 10.04 -39.56 -0.40 -1.58 16 14 C -0.23 -4.76 9.16 -39.42 -0.36 -5.12 16 15 C 0.15 3.35 5.49 -38.91 -0.21 3.13 16 16 O -0.15 -4.16 9.20 0.04 0.00 -4.16 16 17 C -0.40 -10.71 9.49 30.87 0.29 -10.42 16 18 H 0.09 2.25 5.21 -52.49 -0.27 1.98 16 19 C 0.04 1.19 5.49 -17.52 -0.10 1.09 16 20 N -0.85 -24.66 13.67 55.48 0.76 -23.91 16 21 Si 0.94 20.26 29.55 -169.99 -5.02 15.24 16 22 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 23 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 24 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 25 C -0.18 -3.33 9.91 -39.26 -0.39 -3.72 16 26 C 0.07 1.40 6.97 -39.10 -0.27 1.13 16 27 O -0.30 -5.30 10.81 -45.75 -0.49 -5.79 16 28 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.07 0.88 7.94 -51.93 -0.41 0.47 16 31 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 32 H 0.08 0.74 8.14 -51.92 -0.42 0.32 16 33 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.13 2.13 8.06 -52.49 -0.42 1.71 16 35 H 0.13 2.80 6.29 -52.48 -0.33 2.47 16 36 H 0.40 6.64 8.84 -40.82 -0.36 6.27 16 37 H 0.11 1.65 8.06 -52.49 -0.42 1.23 16 38 H 0.11 1.44 8.06 -52.48 -0.42 1.02 16 39 H 0.11 1.54 8.06 -52.48 -0.42 1.12 16 40 H 0.13 2.65 5.64 -52.49 -0.30 2.35 16 41 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 42 H 0.13 2.06 8.06 -52.49 -0.42 1.64 16 LS Contribution 357.87 15.07 5.39 5.39 Total: -1.00 -31.38 357.87 -8.50 -39.87 By element: Atomic # 1 Polarization: 18.07 SS G_CDS: -5.04 Total: 13.04 kcal Atomic # 6 Polarization: -17.62 SS G_CDS: -3.55 Total: -21.17 kcal Atomic # 7 Polarization: -37.27 SS G_CDS: 0.72 Total: -36.55 kcal Atomic # 8 Polarization: -14.83 SS G_CDS: -0.99 Total: -15.82 kcal Atomic # 14 Polarization: 20.26 SS G_CDS: -5.02 Total: 15.24 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -31.38 -8.50 -39.87 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001212600509.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.250 kcal (2) G-P(sol) polarization free energy of solvation -31.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.873 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds