Wall clock time and date at job start Tue Mar 31 2020 14:29:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52994 * 110.50980 * 2 1 4 4 O 1.43982 * 110.56886 * 237.07803 * 2 1 3 5 5 C 1.36625 * 105.47609 * 268.58399 * 4 2 1 6 6 C 1.38550 * 131.43854 * 162.71073 * 5 4 2 7 7 C 1.38174 * 120.12046 * 180.02562 * 6 5 4 8 8 C 1.38896 * 120.06922 * 0.02562 * 7 6 5 9 9 N 1.39899 * 120.01058 * 179.97438 * 8 7 6 10 10 C 1.39759 * 120.00168 * 355.25812 * 9 8 7 11 11 C 1.38783 * 120.11231 * 254.85475 * 10 9 8 12 12 C 1.38181 * 119.99300 * 180.27540 * 11 10 9 13 13 C 1.38351 * 120.20687 * 359.70722 * 12 11 10 14 14 C 1.38175 * 120.21526 * 0.02562 * 13 12 11 15 15 C 1.38725 * 120.00910 * 359.97438 * 14 13 12 16 16 O 1.35781 * 120.10484 * 180.02562 * 15 14 13 17 17 C 1.34800 * 116.99979 * 354.34440 * 16 15 14 18 18 H 1.07999 * 120.00505 * 5.06872 * 17 16 15 19 19 C 1.38620 * 120.00068 * 185.07333 * 17 16 15 20 20 N 1.31582 * 119.99920 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 120.00385 * 179.97438 * 19 17 16 22 22 H 1.48504 * 109.46694 * 59.99654 * 21 19 17 23 23 H 1.48500 * 109.47423 * 179.97438 * 21 19 17 24 24 H 1.48502 * 109.47029 * 300.00146 * 21 19 17 25 25 C 1.38849 * 119.97572 * 0.25479 * 8 7 6 26 26 C 1.38490 * 119.97454 * 359.44150 * 25 8 7 27 27 O 1.36517 * 131.45141 * 180.20374 * 26 25 8 28 28 H 1.09001 * 109.46964 * 297.93637 * 1 2 3 29 29 H 1.08993 * 109.47389 * 57.94157 * 1 2 3 30 30 H 1.09003 * 109.46942 * 177.94556 * 1 2 3 31 31 H 1.08999 * 109.47045 * 182.06212 * 3 2 1 32 32 H 1.09008 * 109.47043 * 302.05680 * 3 2 1 33 33 H 1.08997 * 109.47604 * 62.05645 * 3 2 1 34 34 H 1.07997 * 119.94185 * 359.97438 * 6 5 4 35 35 H 1.08008 * 119.96551 * 180.02562 * 7 6 5 36 36 H 0.96999 * 119.99521 * 175.26188 * 9 8 7 37 37 H 1.08000 * 120.00355 * 0.02562 * 11 10 9 38 38 H 1.08004 * 119.89447 * 179.72343 * 12 11 10 39 39 H 1.08005 * 119.89242 * 180.02562 * 13 12 11 40 40 H 1.07998 * 119.99617 * 180.02562 * 14 13 12 41 41 H 0.96997 * 120.00000 * 180.02562 * 20 19 17 42 42 H 1.08000 * 120.00992 * 179.72952 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0661 1.4330 0.0000 4 8 2.0359 -0.7327 -1.1316 5 6 2.1945 -2.0169 -0.6931 6 6 2.3416 -3.2096 -1.3825 7 6 2.4877 -4.3968 -0.6908 8 6 2.4868 -4.3977 0.6981 9 7 2.6342 -5.6005 1.3972 10 6 2.6829 -6.8117 0.7015 11 6 1.5868 -7.6630 0.7083 12 6 1.6396 -8.8625 0.0243 13 6 2.7807 -9.2162 -0.6735 14 6 3.8749 -8.3726 -0.6905 15 6 3.8316 -7.1662 -0.0070 16 8 4.9056 -6.3356 -0.0229 17 6 6.0234 -6.7919 -0.6222 18 1 6.0124 -7.7434 -1.1330 19 6 7.1873 -6.0400 -0.5828 20 7 7.2008 -4.8806 0.0392 21 14 8.7367 -6.6727 -1.4126 22 1 8.4798 -6.8606 -2.8632 23 1 9.8340 -5.6894 -1.2280 24 1 9.1277 -7.9710 -0.8070 25 6 2.3337 -3.2051 1.3925 26 6 2.1936 -2.0141 0.6997 27 8 2.0353 -0.7295 1.1336 28 1 -0.3633 0.4815 0.9079 29 1 -0.3634 0.5454 -0.8709 30 1 -0.3633 -1.0270 -0.0368 31 1 3.1553 1.4134 -0.0370 32 1 1.6825 1.9644 -0.8710 33 1 1.7424 1.9421 0.9078 34 1 2.3413 -3.2116 -2.4624 35 1 2.6026 -5.3251 -1.2308 36 1 2.7027 -5.5938 2.3648 37 1 0.6942 -7.3898 1.2514 38 1 0.7873 -9.5258 0.0343 39 1 2.8163 -10.1548 -1.2067 40 1 4.7637 -8.6521 -1.2368 41 1 8.0151 -4.3542 0.0664 42 1 2.3286 -3.2057 2.4725 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001212600509.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:29:18 Heat of formation + Delta-G solvation = -44.118084 kcal Electronic energy + Delta-G solvation = -27604.028862 eV Core-core repulsion = 23708.448282 eV Total energy + Delta-G solvation = -3895.580580 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.130 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.17953 -41.10716 -39.34819 -38.06258 -37.13757 -35.84970 -34.24144 -33.51138 -31.75214 -30.82266 -29.95928 -28.66435 -28.18991 -27.24865 -24.21725 -23.73713 -23.20814 -22.75924 -22.34488 -19.79024 -19.46801 -18.93482 -18.44315 -17.97616 -17.34366 -16.77486 -16.39681 -16.30988 -16.14992 -15.72400 -15.38151 -15.28471 -14.90685 -14.82651 -14.61382 -14.50306 -14.04578 -13.93353 -13.75388 -13.54621 -13.35374 -13.31331 -13.10190 -13.07002 -12.96760 -12.54963 -12.52313 -12.44067 -12.22338 -12.06589 -12.00851 -11.28476 -10.77548 -10.57896 -9.72950 -9.52599 -8.95462 -8.43158 -8.15319 -6.09568 0.27607 0.36418 0.56714 0.76291 1.34144 1.44221 1.49176 1.77826 2.17267 2.37368 2.61238 2.79777 2.85582 3.18340 3.51669 3.59435 3.62310 3.63600 4.03775 4.16702 4.22092 4.23574 4.30488 4.42426 4.47737 4.55567 4.61085 4.63694 4.71359 4.79087 4.89044 4.96787 5.03650 5.09153 5.12772 5.15599 5.18309 5.25214 5.31931 5.47120 5.61484 5.65768 5.78631 6.00493 6.10543 6.23849 6.54130 6.86660 7.01842 7.83535 8.77843 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.011192 B = 0.004247 C = 0.003319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2501.156872 B = 6591.081012 C = 8435.070479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.237 3.763 3 C -0.142 4.142 4 O -0.318 6.318 5 C -0.047 4.047 6 C -0.060 4.060 7 C -0.175 4.175 8 C 0.239 3.761 9 N -0.671 5.671 10 C 0.050 3.950 11 C -0.071 4.071 12 C -0.184 4.184 13 C -0.067 4.067 14 C -0.247 4.247 15 C 0.113 3.887 16 O -0.204 6.204 17 C -0.412 4.412 18 H 0.100 0.900 19 C -0.017 4.017 20 N -0.912 5.912 21 Si 1.009 2.991 22 H -0.259 1.259 23 H -0.277 1.277 24 H -0.257 1.257 25 C -0.185 4.185 26 C 0.068 3.932 27 O -0.315 6.315 28 H 0.103 0.897 29 H 0.104 0.896 30 H 0.053 0.947 31 H 0.060 0.940 32 H 0.109 0.891 33 H 0.108 0.892 34 H 0.141 0.859 35 H 0.117 0.883 36 H 0.409 0.591 37 H 0.146 0.854 38 H 0.154 0.846 39 H 0.145 0.855 40 H 0.119 0.881 41 H 0.268 0.732 42 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.071 3.447 0.199 14.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.163 3.837 3 C -0.199 4.199 4 O -0.236 6.236 5 C -0.092 4.092 6 C -0.080 4.080 7 C -0.198 4.198 8 C 0.135 3.865 9 N -0.297 5.297 10 C -0.044 4.044 11 C -0.090 4.090 12 C -0.203 4.203 13 C -0.085 4.085 14 C -0.267 4.267 15 C 0.060 3.940 16 O -0.109 6.109 17 C -0.489 4.489 18 H 0.117 0.883 19 C -0.216 4.216 20 N -0.549 5.549 21 Si 0.830 3.170 22 H -0.183 1.183 23 H -0.202 1.202 24 H -0.182 1.182 25 C -0.208 4.208 26 C 0.023 3.977 27 O -0.232 6.232 28 H 0.121 0.879 29 H 0.122 0.878 30 H 0.072 0.928 31 H 0.079 0.921 32 H 0.128 0.872 33 H 0.127 0.873 34 H 0.159 0.841 35 H 0.135 0.865 36 H 0.246 0.754 37 H 0.163 0.837 38 H 0.171 0.829 39 H 0.163 0.837 40 H 0.136 0.864 41 H 0.077 0.923 42 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -13.812 3.945 0.239 14.366 hybrid contribution 1.332 -0.153 -0.009 1.341 sum -12.479 3.792 0.230 13.045 Atomic orbital electron populations 1.22534 0.90982 1.03805 1.05935 1.25049 0.95126 0.92438 0.71040 1.21999 1.02290 0.89409 1.06164 1.87334 1.82777 1.16825 1.36670 1.19503 1.11899 0.86077 0.91759 1.19860 0.99877 0.87802 1.00420 1.20339 1.08977 0.97734 0.92744 1.17393 0.92180 0.85837 0.91057 1.41396 1.79722 1.00772 1.07803 1.16944 0.93245 0.89906 1.04308 1.21270 0.95683 0.93848 0.98226 1.21059 0.99470 0.97811 1.01984 1.21232 0.91868 0.98626 0.96816 1.21273 1.01807 0.96461 1.07113 1.20322 0.88606 0.90342 0.94717 1.84026 1.18413 1.39180 1.69329 1.21730 0.86948 1.06557 1.33637 0.88284 1.26421 1.01745 0.95586 0.97797 1.70217 1.29464 1.12999 1.42254 0.84773 0.75340 0.78223 0.78709 1.18320 1.20162 1.18150 1.19332 1.13742 0.87302 1.00426 1.19388 1.01165 0.85560 0.91601 1.87329 1.81833 1.16652 1.37356 0.87879 0.87770 0.92815 0.92089 0.87243 0.87318 0.84142 0.86481 0.75362 0.83653 0.82871 0.83686 0.86351 0.92289 0.83634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.62 9.19 71.98 0.66 -2.96 16 2 C 0.24 6.62 1.61 30.59 0.05 6.66 16 3 C -0.14 -2.84 9.39 71.98 0.68 -2.17 16 4 O -0.32 -11.25 10.82 -77.53 -0.84 -12.09 16 5 C -0.05 -1.84 6.94 22.60 0.16 -1.68 16 6 C -0.06 -2.39 10.05 22.33 0.22 -2.16 16 7 C -0.18 -7.41 8.95 22.41 0.20 -7.21 16 8 C 0.24 9.66 6.50 38.16 0.25 9.91 16 9 N -0.67 -25.61 5.18 -180.05 -0.93 -26.54 16 10 C 0.05 1.95 4.88 38.32 0.19 2.13 16 11 C -0.07 -2.18 9.97 22.39 0.22 -1.95 16 12 C -0.18 -5.08 10.04 22.28 0.22 -4.85 16 13 C -0.07 -2.09 10.04 22.28 0.22 -1.87 16 14 C -0.25 -10.05 9.16 22.37 0.20 -9.85 16 15 C 0.11 5.27 5.49 22.70 0.12 5.39 16 16 O -0.20 -11.63 9.20 -22.77 -0.21 -11.84 16 17 C -0.41 -23.39 9.49 67.91 0.64 -22.75 16 18 H 0.10 5.15 5.21 -2.91 -0.02 5.14 16 19 C -0.02 -0.97 5.49 84.82 0.47 -0.50 16 20 N -0.91 -56.21 13.67 21.61 0.30 -55.92 16 21 Si 1.01 43.10 29.55 68.60 2.03 45.12 16 22 H -0.26 -10.42 7.11 99.48 0.71 -9.71 16 23 H -0.28 -11.57 7.11 99.48 0.71 -10.87 16 24 H -0.26 -10.27 7.11 99.48 0.71 -9.56 16 25 C -0.18 -7.00 9.91 22.48 0.22 -6.78 16 26 C 0.07 2.63 6.97 22.58 0.16 2.78 16 27 O -0.31 -10.87 10.81 -76.25 -0.82 -11.69 16 28 H 0.10 1.65 8.14 -2.39 -0.02 1.63 16 29 H 0.10 1.66 8.14 -2.39 -0.02 1.64 16 30 H 0.05 1.29 7.94 -2.39 -0.02 1.27 16 31 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 32 H 0.11 1.63 8.14 -2.38 -0.02 1.61 16 33 H 0.11 1.63 8.14 -2.39 -0.02 1.61 16 34 H 0.14 4.94 8.06 -2.91 -0.02 4.92 16 35 H 0.12 5.23 6.29 -2.91 -0.02 5.21 16 36 H 0.41 13.72 8.84 -92.71 -0.82 12.90 16 37 H 0.15 3.61 8.06 -2.91 -0.02 3.58 16 38 H 0.15 3.01 8.06 -2.91 -0.02 2.99 16 39 H 0.15 3.46 8.06 -2.91 -0.02 3.44 16 40 H 0.12 4.98 5.64 -2.91 -0.02 4.96 16 41 H 0.27 15.46 8.31 -92.71 -0.77 14.68 16 42 H 0.15 4.77 8.06 -2.91 -0.02 4.75 16 Total: -1.00 -73.90 357.87 4.66 -69.24 By element: Atomic # 1 Polarization: 41.33 SS G_CDS: 0.25 Total: 41.58 kcal Atomic # 6 Polarization: -42.75 SS G_CDS: 4.89 Total: -37.86 kcal Atomic # 7 Polarization: -81.82 SS G_CDS: -0.64 Total: -82.46 kcal Atomic # 8 Polarization: -33.75 SS G_CDS: -1.87 Total: -35.62 kcal Atomic # 14 Polarization: 43.10 SS G_CDS: 2.03 Total: 45.12 kcal Total: -73.90 4.66 -69.24 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001212600509.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.122 kcal (2) G-P(sol) polarization free energy of solvation -73.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.240 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds