Wall clock time and date at job start Tue Mar 31 2020 14:29:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50696 * 109.62944 * 2 1 4 4 C 1.38277 * 119.55227 * 180.28604 * 3 2 1 5 5 C 1.38774 * 119.38096 * 179.76722 * 4 3 2 6 6 C 1.38406 * 118.51726 * 0.49975 * 5 4 3 7 7 C 1.39375 * 119.06287 * 359.50149 * 6 5 4 8 8 C 1.48212 * 119.73241 * 180.27507 * 7 6 5 9 9 C 1.39336 * 120.16520 * 46.84929 * 8 7 6 10 10 C 1.37981 * 119.94322 * 179.67166 * 9 8 7 11 11 C 1.38464 * 120.27837 * 0.62728 * 10 9 8 12 12 C 1.38096 * 120.33352 * 359.67351 * 11 10 9 13 13 C 1.38781 * 120.04930 * 359.97438 * 12 11 10 14 14 O 1.35635 * 120.14064 * 180.02562 * 13 12 11 15 15 C 1.34820 * 116.99803 * 5.71886 * 14 13 12 16 16 H 1.07997 * 119.99844 * 4.74497 * 15 14 13 17 17 C 1.38655 * 120.00131 * 184.74526 * 15 14 13 18 18 N 1.31560 * 120.00098 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 120.00115 * 179.97438 * 17 15 14 20 20 H 1.48491 * 109.47128 * 0.02562 * 19 17 15 21 21 H 1.48500 * 109.46946 * 120.00438 * 19 17 15 22 22 H 1.48505 * 109.47123 * 239.99994 * 19 17 15 23 23 N 1.31743 * 119.54960 * 0.30699 * 3 2 1 24 24 O 1.43752 * 109.51230 * 120.31762 * 2 1 3 25 25 C 1.44782 * 104.81350 * 95.48863 * 24 2 1 26 26 C 1.54914 * 101.72254 * 36.10708 * 25 24 2 27 27 O 1.43372 * 109.62918 * 239.60614 * 2 1 3 28 28 H 1.09005 * 109.47197 * 59.99704 * 1 2 3 29 29 H 1.08997 * 109.47545 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47123 * 299.99865 * 1 2 3 31 31 H 1.07999 * 120.31492 * 0.02562 * 4 3 2 32 32 H 1.08000 * 120.74463 * 180.27335 * 5 4 3 33 33 H 1.08001 * 120.47239 * 179.78293 * 6 5 4 34 34 H 1.08006 * 120.02262 * 359.97438 * 9 8 7 35 35 H 1.08001 * 119.86380 * 180.30033 * 10 9 8 36 36 H 1.07991 * 119.83753 * 179.69329 * 11 10 9 37 37 H 1.07990 * 119.97933 * 180.02562 * 12 11 10 38 38 H 0.96994 * 120.00216 * 179.97438 * 18 17 15 39 39 H 1.09003 * 110.98360 * 277.99509 * 25 24 2 40 40 H 1.09001 * 111.00610 * 154.23030 * 25 24 2 41 41 H 1.08998 * 110.69519 * 206.03516 * 26 25 24 42 42 H 1.09002 * 110.84379 * 82.90045 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0362 1.4194 0.0000 4 6 3.3983 1.6577 -0.0060 5 6 3.8605 2.9661 -0.0109 6 6 2.9341 3.9943 0.0010 7 6 1.5758 3.6817 0.0069 8 6 0.5709 4.7711 0.0134 9 6 0.6976 5.8459 -0.8642 10 6 -0.2443 6.8542 -0.8588 11 6 -1.3096 6.8097 0.0247 12 6 -1.4430 5.7531 0.9037 13 6 -0.5076 4.7279 0.9051 14 8 -0.6371 3.6889 1.7673 15 6 -1.7583 3.6502 2.5150 16 1 -2.5377 4.3810 2.3577 17 6 -1.9108 2.6720 3.4858 18 7 -0.9616 1.7814 3.6771 19 14 -3.4640 2.6188 4.5222 20 1 -4.3702 3.7217 4.1130 21 1 -4.1483 1.3162 4.3218 22 1 -3.1083 2.7757 5.9555 23 7 1.1750 2.4164 0.0061 24 8 2.0101 -0.6840 1.1697 25 6 2.2599 -2.0403 0.7289 26 6 2.7854 -1.8118 -0.7103 27 8 2.0116 -0.6832 -1.1648 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 4.0959 0.8332 -0.0111 32 1 4.9196 3.1775 -0.0201 33 1 3.2589 5.0243 0.0012 34 1 1.5298 5.8872 -1.5514 35 1 -0.1475 7.6842 -1.5430 36 1 -2.0400 7.6052 0.0261 37 1 -2.2763 5.7240 1.5900 38 1 -1.0680 1.0974 4.3565 39 1 1.3392 -2.6237 0.7202 40 1 3.0172 -2.5195 1.3494 41 1 2.5947 -2.6856 -1.3333 42 1 3.8486 -1.5713 -0.7014 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243584322.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:29:27 Heat of formation + Delta-G solvation = -40.251612 kcal Electronic energy + Delta-G solvation = -28231.443076 eV Core-core repulsion = 24336.030159 eV Total energy + Delta-G solvation = -3895.412917 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.130 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.65875 -39.52307 -38.50894 -36.31547 -34.81641 -32.92952 -32.40919 -32.09127 -30.45608 -29.06385 -28.36119 -28.11486 -25.34612 -23.90105 -23.35905 -23.11610 -21.52840 -20.69590 -20.50415 -17.93075 -17.56758 -17.07762 -16.51881 -15.94433 -15.74482 -15.27753 -15.02102 -14.58515 -14.45298 -14.22904 -13.89377 -13.58504 -13.56365 -13.20500 -13.14833 -12.84307 -12.60603 -12.55544 -12.40795 -11.69052 -11.66370 -11.63802 -11.47138 -11.33463 -11.09195 -10.90951 -10.76538 -10.70701 -10.41520 -10.06607 -9.69134 -9.38681 -9.34090 -8.90479 -8.79516 -8.61214 -7.90187 -7.13066 -6.40282 -3.97635 1.36628 1.71681 2.28616 2.41653 3.14095 3.15219 3.20343 3.59729 3.87704 3.97919 4.39555 4.59367 4.68102 4.85698 4.92474 4.95903 5.12229 5.19119 5.20319 5.24182 5.43671 5.45472 5.54759 5.60608 5.64312 5.73776 5.80434 5.84465 6.00042 6.01345 6.19269 6.27090 6.33175 6.34884 6.54358 6.58091 6.69070 6.80982 7.05042 7.08276 7.10055 7.28507 7.33912 7.36356 7.40892 7.79782 8.00840 8.64982 9.02660 9.74236 10.74916 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.009426 B = 0.005828 C = 0.003932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2969.898667 B = 4802.949943 C = 7119.577549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.315 3.685 3 C 0.127 3.873 4 C -0.157 4.157 5 C -0.084 4.084 6 C -0.164 4.164 7 C 0.206 3.794 8 C -0.138 4.138 9 C -0.050 4.050 10 C -0.222 4.222 11 C -0.063 4.063 12 C -0.237 4.237 13 C 0.179 3.821 14 O -0.146 6.146 15 C -0.393 4.393 16 H 0.091 0.909 17 C 0.044 3.956 18 N -0.843 5.843 19 Si 0.936 3.064 20 H -0.267 1.267 21 H -0.276 1.276 22 H -0.277 1.277 23 N -0.423 5.423 24 O -0.353 6.353 25 C 0.013 3.987 26 C 0.018 3.982 27 O -0.374 6.374 28 H 0.073 0.927 29 H 0.048 0.952 30 H 0.104 0.896 31 H 0.123 0.877 32 H 0.130 0.870 33 H 0.132 0.868 34 H 0.113 0.887 35 H 0.108 0.892 36 H 0.108 0.892 37 H 0.129 0.871 38 H 0.269 0.731 39 H 0.076 0.924 40 H 0.106 0.894 41 H 0.098 0.902 42 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.459 -3.003 -7.178 10.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.238 3.762 3 C -0.013 4.013 4 C -0.177 4.177 5 C -0.110 4.110 6 C -0.184 4.184 7 C 0.069 3.931 8 C -0.141 4.141 9 C -0.069 4.069 10 C -0.241 4.241 11 C -0.081 4.081 12 C -0.256 4.256 13 C 0.122 3.878 14 O -0.046 6.046 15 C -0.469 4.469 16 H 0.108 0.892 17 C -0.162 4.162 18 N -0.476 5.476 19 Si 0.761 3.239 20 H -0.191 1.191 21 H -0.202 1.202 22 H -0.203 1.203 23 N -0.133 5.133 24 O -0.273 6.273 25 C -0.064 4.064 26 C -0.059 4.059 27 O -0.294 6.294 28 H 0.092 0.908 29 H 0.067 0.933 30 H 0.123 0.877 31 H 0.141 0.859 32 H 0.148 0.852 33 H 0.150 0.850 34 H 0.131 0.869 35 H 0.126 0.874 36 H 0.126 0.874 37 H 0.147 0.853 38 H 0.079 0.921 39 H 0.094 0.906 40 H 0.125 0.875 41 H 0.116 0.884 42 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 6.737 -3.495 -6.935 10.281 hybrid contribution 0.172 0.032 0.666 0.688 sum 6.909 -3.463 -6.269 9.952 Atomic orbital electron populations 1.22153 0.91269 1.01429 1.05982 1.21749 0.93952 0.86046 0.74494 1.20682 0.89698 0.93675 0.97279 1.21675 0.96249 0.97310 1.02505 1.21340 0.99632 0.92336 0.97647 1.22094 0.93493 1.00126 1.02673 1.19605 0.90720 0.89853 0.92918 1.17481 0.97553 0.96334 1.02707 1.20628 0.97842 0.92318 0.96130 1.20449 0.98331 1.00914 1.04364 1.20833 0.96526 0.96590 0.94183 1.21132 1.03153 0.96564 1.04774 1.19270 0.91656 0.87273 0.89558 1.84055 1.39537 1.37184 1.43832 1.21393 0.93900 1.15891 1.15761 0.89158 1.25256 0.98880 0.95221 0.96850 1.70085 1.31906 1.14371 1.31246 0.85726 0.80208 0.78662 0.79317 1.19133 1.20162 1.20252 1.67507 1.38136 0.98792 1.08875 1.89427 1.86111 1.20763 1.30991 1.24372 1.01409 0.85895 0.94694 1.24187 0.96467 0.89906 0.95313 1.88957 1.69540 1.41333 1.29611 0.90846 0.93253 0.87708 0.85945 0.85207 0.85022 0.86909 0.87381 0.87412 0.85324 0.92136 0.90580 0.87543 0.88410 0.90908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.10 8.40 37.16 0.31 -2.79 16 2 C 0.31 6.08 1.19 -27.89 -0.03 6.05 16 3 C 0.13 2.66 6.07 -82.62 -0.50 2.15 16 4 C -0.16 -2.79 9.51 -39.37 -0.37 -3.17 16 5 C -0.08 -1.34 10.16 -39.32 -0.40 -1.74 16 6 C -0.16 -2.92 9.46 -39.10 -0.37 -3.29 16 7 C 0.21 4.48 6.08 -82.96 -0.50 3.98 16 8 C -0.14 -3.04 5.63 -104.73 -0.59 -3.63 16 9 C -0.05 -0.92 9.42 -39.27 -0.37 -1.29 16 10 C -0.22 -3.82 10.03 -39.59 -0.40 -4.22 16 11 C -0.06 -1.15 10.03 -39.55 -0.40 -1.55 16 12 C -0.24 -5.18 9.13 -39.43 -0.36 -5.54 16 13 C 0.18 4.42 6.62 -38.72 -0.26 4.16 16 14 O -0.15 -4.13 8.65 0.43 0.00 -4.13 16 15 C -0.39 -10.90 9.45 30.89 0.29 -10.61 16 16 H 0.09 2.33 5.28 -52.49 -0.28 2.06 16 17 C 0.04 1.20 5.49 -17.51 -0.10 1.10 16 18 N -0.84 -24.41 13.67 55.48 0.76 -23.65 16 19 Si 0.94 20.53 29.55 -169.99 -5.02 15.51 16 20 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 21 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 22 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 23 N -0.42 -9.88 8.21 -6.05 -0.05 -9.93 16 24 O -0.35 -6.64 10.87 -59.04 -0.64 -7.28 16 25 C 0.01 0.17 7.91 38.17 0.30 0.47 16 26 C 0.02 0.21 8.07 38.17 0.31 0.52 16 27 O -0.37 -6.26 10.72 -59.04 -0.63 -6.89 16 28 H 0.07 1.52 8.06 -51.93 -0.42 1.10 16 29 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.10 2.61 8.05 -51.93 -0.42 2.19 16 31 H 0.12 1.86 8.06 -52.49 -0.42 1.43 16 32 H 0.13 1.56 8.06 -52.49 -0.42 1.13 16 33 H 0.13 1.97 7.97 -52.49 -0.42 1.55 16 34 H 0.11 1.73 7.97 -52.48 -0.42 1.31 16 35 H 0.11 1.53 8.06 -52.49 -0.42 1.11 16 36 H 0.11 1.64 8.06 -52.49 -0.42 1.21 16 37 H 0.13 2.80 5.70 -52.49 -0.30 2.50 16 38 H 0.27 7.22 8.31 -40.82 -0.34 6.88 16 39 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 40 H 0.11 1.03 8.14 -51.93 -0.42 0.61 16 41 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 42 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 LS Contribution 359.96 15.07 5.42 5.42 Total: -1.00 -33.15 359.96 -8.79 -41.94 By element: Atomic # 1 Polarization: 13.60 SS G_CDS: -5.19 Total: 8.41 kcal Atomic # 6 Polarization: -15.96 SS G_CDS: -3.44 Total: -19.39 kcal Atomic # 7 Polarization: -34.29 SS G_CDS: 0.71 Total: -33.59 kcal Atomic # 8 Polarization: -17.03 SS G_CDS: -1.27 Total: -18.30 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.02 Total: 15.51 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -33.15 -8.79 -41.94 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243584322.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.689 kcal (2) G-P(sol) polarization free energy of solvation -33.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.941 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds