Wall clock time and date at job start Tue Mar 31 2020 14:29:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50699 * 109.62663 * 2 1 4 4 C 1.38324 * 119.47794 * 180.28710 * 3 2 1 5 5 C 1.38402 * 119.28646 * 179.78582 * 4 3 2 6 6 C 1.39821 * 118.30642 * 0.47777 * 5 4 3 7 7 C 1.48293 * 120.53936 * 179.77847 * 6 5 4 8 8 C 1.39282 * 120.16215 * 310.01576 * 7 6 5 9 9 C 1.38012 * 119.94746 * 180.27256 * 8 7 6 10 10 C 1.38448 * 120.26901 * 359.70658 * 9 8 7 11 11 C 1.38107 * 120.32459 * 0.02562 * 10 9 8 12 12 C 1.38762 * 120.04817 * 359.97438 * 11 10 9 13 13 O 1.35665 * 120.13475 * 180.02562 * 12 11 10 14 14 C 1.34813 * 117.00034 * 5.59776 * 13 12 11 15 15 H 1.08000 * 119.99936 * 354.93913 * 14 13 12 16 16 C 1.38651 * 119.99847 * 174.93474 * 14 13 12 17 17 N 1.31558 * 120.00082 * 0.02562 * 16 14 13 18 18 Si 1.86804 * 119.99783 * 179.97438 * 16 14 13 19 19 H 1.48507 * 109.46953 * 90.00620 * 18 16 14 20 20 H 1.48499 * 109.47232 * 209.99993 * 18 16 14 21 21 H 1.48500 * 109.47228 * 330.00280 * 18 16 14 22 22 C 1.39356 * 118.91580 * 359.50565 * 6 5 4 23 23 N 1.31735 * 120.59097 * 0.26714 * 22 6 5 24 24 O 1.43757 * 109.51230 * 120.31565 * 2 1 3 25 25 C 1.44782 * 104.81142 * 95.49311 * 24 2 1 26 26 C 1.54909 * 101.72520 * 36.10634 * 25 24 2 27 27 O 1.43373 * 109.63140 * 239.60820 * 2 1 3 28 28 H 1.08998 * 109.47772 * 60.00213 * 1 2 3 29 29 H 1.09009 * 109.47121 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47428 * 299.99787 * 1 2 3 31 31 H 1.07996 * 120.35807 * 0.02562 * 4 3 2 32 32 H 1.08002 * 120.85220 * 180.25227 * 5 4 3 33 33 H 1.08002 * 120.02782 * 0.02562 * 8 7 6 34 34 H 1.08000 * 119.86660 * 179.72611 * 9 8 7 35 35 H 1.08000 * 119.83741 * 180.02562 * 10 9 8 36 36 H 1.07994 * 119.97994 * 179.97438 * 11 10 9 37 37 H 0.97003 * 119.99550 * 179.97438 * 17 16 14 38 38 H 1.07999 * 119.70265 * 180.25520 * 22 6 5 39 39 H 1.09006 * 110.98089 * 277.99451 * 25 24 2 40 40 H 1.08999 * 111.00816 * 154.22821 * 25 24 2 41 41 H 1.08997 * 110.69937 * 206.03756 * 26 25 24 42 42 H 1.08996 * 110.84315 * 82.90189 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0361 1.4194 0.0000 4 6 3.3990 1.6561 -0.0060 5 6 3.8595 2.9613 -0.0105 6 6 2.9193 3.9961 0.0015 7 6 3.3579 5.4127 0.0023 8 6 4.3129 5.8491 0.9174 9 6 4.7137 7.1697 0.9180 10 6 4.1748 8.0630 0.0078 11 6 3.2312 7.6411 -0.9082 12 6 2.8185 6.3163 -0.9205 13 8 1.8921 5.8999 -1.8199 14 6 1.4967 6.7928 -2.7493 15 1 1.8529 7.8114 -2.7054 16 6 0.6329 6.4033 -3.7615 17 7 0.1987 5.1626 -3.8146 18 14 0.0844 7.6408 -5.0489 19 1 1.0338 7.6209 -6.1907 20 1 -1.2751 7.2856 -5.5294 21 1 0.0585 8.9995 -4.4501 22 6 1.5633 3.6745 0.0069 23 7 1.1727 2.4164 0.0061 24 8 2.0101 -0.6840 1.1697 25 6 2.2600 -2.0402 0.7290 26 6 2.7855 -1.8117 -0.7102 27 8 2.0116 -0.6832 -1.1648 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 4.0962 0.8314 -0.0111 32 1 4.9181 3.1750 -0.0194 33 1 4.7365 5.1555 1.6287 34 1 5.4511 7.5077 1.6310 35 1 4.4938 9.0948 0.0141 36 1 2.8141 8.3427 -1.6153 37 1 -0.4060 4.8903 -4.5225 38 1 0.8262 4.4638 0.0120 39 1 1.3393 -2.6237 0.7202 40 1 3.0173 -2.5194 1.3494 41 1 2.5949 -2.6855 -1.3333 42 1 3.8486 -1.5713 -0.7013 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243586306.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:29:31 Heat of formation + Delta-G solvation = -65.297928 kcal Electronic energy + Delta-G solvation = -27470.211696 eV Core-core repulsion = 23573.712689 eV Total energy + Delta-G solvation = -3896.499007 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.130 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.03691 -41.11006 -40.18447 -38.10213 -36.10921 -34.77829 -34.27255 -33.15700 -32.34996 -30.74279 -29.66178 -29.34337 -27.36141 -25.54528 -24.57817 -24.15252 -23.26239 -22.55812 -21.86532 -19.82592 -18.98623 -18.70125 -18.10842 -17.39773 -17.20272 -16.77471 -16.30527 -16.22692 -16.02026 -15.56745 -15.45418 -15.24293 -15.01110 -14.75817 -14.68362 -14.30374 -14.17948 -14.02546 -13.84472 -13.55326 -13.37853 -13.21780 -13.05855 -12.93825 -12.56534 -12.39252 -12.35322 -12.24904 -12.13784 -11.25096 -11.17624 -11.06345 -10.89712 -10.80904 -10.45623 -10.18317 -9.45845 -8.87606 -8.45547 -6.13497 -0.20619 0.31035 0.66080 0.77564 1.33451 1.42701 1.50430 2.15767 2.33504 2.51769 2.82918 3.00581 3.17128 3.44031 3.47558 3.54987 3.71236 3.78397 3.91585 4.04068 4.10797 4.14359 4.19328 4.28017 4.28456 4.42725 4.51604 4.58342 4.62713 4.71787 4.72951 4.76383 4.78753 4.92267 5.00334 5.09093 5.11455 5.18389 5.25840 5.27442 5.57915 5.66225 5.75272 5.76465 6.00967 6.04071 6.21118 6.96074 6.98497 7.77696 8.75245 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.011722 B = 0.004043 C = 0.003172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2388.186966 B = 6924.741987 C = 8824.934635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.317 3.683 3 C 0.079 3.921 4 C -0.135 4.135 5 C -0.075 4.075 6 C -0.062 4.062 7 C -0.147 4.147 8 C -0.054 4.054 9 C -0.190 4.190 10 C -0.064 4.064 11 C -0.248 4.248 12 C 0.128 3.872 13 O -0.213 6.213 14 C -0.415 4.415 15 H 0.103 0.897 16 C -0.018 4.018 17 N -0.911 5.911 18 Si 1.014 2.986 19 H -0.265 1.265 20 H -0.275 1.275 21 H -0.251 1.251 22 C 0.111 3.889 23 N -0.481 5.481 24 O -0.378 6.378 25 C 0.012 3.988 26 C 0.007 3.993 27 O -0.394 6.394 28 H 0.055 0.945 29 H 0.083 0.917 30 H 0.071 0.929 31 H 0.158 0.842 32 H 0.166 0.834 33 H 0.148 0.852 34 H 0.155 0.845 35 H 0.147 0.853 36 H 0.121 0.879 37 H 0.270 0.730 38 H 0.129 0.871 39 H 0.092 0.908 40 H 0.142 0.858 41 H 0.128 0.872 42 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.096 -10.026 9.542 16.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.239 3.761 3 C -0.059 4.059 4 C -0.155 4.155 5 C -0.101 4.101 6 C -0.064 4.064 7 C -0.149 4.149 8 C -0.072 4.072 9 C -0.208 4.208 10 C -0.081 4.081 11 C -0.267 4.267 12 C 0.076 3.924 13 O -0.118 6.118 14 C -0.491 4.491 15 H 0.120 0.880 16 C -0.216 4.216 17 N -0.548 5.548 18 Si 0.833 3.167 19 H -0.190 1.190 20 H -0.200 1.200 21 H -0.174 1.174 22 C -0.046 4.046 23 N -0.192 5.192 24 O -0.299 6.299 25 C -0.064 4.064 26 C -0.068 4.068 27 O -0.315 6.315 28 H 0.074 0.926 29 H 0.102 0.898 30 H 0.090 0.910 31 H 0.176 0.824 32 H 0.183 0.817 33 H 0.166 0.834 34 H 0.173 0.827 35 H 0.165 0.835 36 H 0.138 0.862 37 H 0.078 0.922 38 H 0.147 0.853 39 H 0.110 0.890 40 H 0.160 0.840 41 H 0.146 0.854 42 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 7.926 -10.439 9.393 16.125 hybrid contribution 0.033 0.823 -1.053 1.336 sum 7.959 -9.616 8.341 15.012 Atomic orbital electron populations 1.22043 0.92354 1.02853 1.03142 1.21507 0.93335 0.85424 0.75785 1.21306 0.91014 0.94354 0.99268 1.21925 0.95891 0.97996 0.99693 1.21918 1.00806 0.91050 0.96280 1.19792 0.94010 0.93969 0.98663 1.18043 1.04306 0.90818 1.01704 1.21144 0.93429 0.96960 0.95651 1.21122 1.04445 0.92887 1.02360 1.21284 0.93482 1.00606 0.92772 1.21274 1.05082 0.95105 1.05218 1.19909 0.88948 0.93283 0.90258 1.83968 1.49507 1.40707 1.37617 1.21813 1.28911 0.92862 1.05515 0.88020 1.26504 0.96225 0.99160 0.99754 1.70228 1.32272 1.18652 1.33674 0.84655 0.77798 0.77326 0.76887 1.19029 1.19960 1.17441 1.22549 0.94559 0.92198 0.95302 1.67155 1.40065 1.00083 1.11854 1.89291 1.86222 1.23629 1.30759 1.24751 1.03302 0.83323 0.94996 1.24609 0.96929 0.89304 0.95973 1.89014 1.70352 1.42961 1.29156 0.92633 0.89826 0.90986 0.82446 0.81656 0.83416 0.82704 0.83543 0.86169 0.92152 0.85341 0.89023 0.83983 0.85440 0.89392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.71 8.39 71.98 0.60 -4.10 16 2 C 0.32 10.32 1.19 29.85 0.04 10.35 16 3 C 0.08 3.08 6.08 42.57 0.26 3.34 16 4 C -0.14 -4.60 9.49 22.33 0.21 -4.39 16 5 C -0.08 -2.61 9.68 22.69 0.22 -2.39 16 6 C -0.06 -2.64 5.28 -19.95 -0.11 -2.75 16 7 C -0.15 -6.13 5.51 -19.93 -0.11 -6.24 16 8 C -0.05 -1.73 9.53 22.47 0.21 -1.51 16 9 C -0.19 -5.41 10.03 22.27 0.22 -5.19 16 10 C -0.06 -2.04 10.03 22.29 0.22 -1.82 16 11 C -0.25 -10.43 9.16 22.36 0.20 -10.23 16 12 C 0.13 6.21 6.57 22.81 0.15 6.36 16 13 O -0.21 -12.49 8.13 -21.63 -0.18 -12.66 16 14 C -0.41 -23.94 9.49 67.92 0.64 -23.30 16 15 H 0.10 5.37 5.21 -2.91 -0.02 5.35 16 16 C -0.02 -1.02 5.49 84.83 0.47 -0.56 16 17 N -0.91 -56.89 13.67 21.61 0.30 -56.60 16 18 Si 1.01 43.44 29.55 68.60 2.03 45.47 16 19 H -0.27 -10.87 7.11 99.48 0.71 -10.16 16 20 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 21 H -0.25 -9.90 7.11 99.48 0.71 -9.20 16 22 C 0.11 5.30 9.97 84.98 0.85 6.15 16 23 N -0.48 -21.89 8.99 -182.97 -1.64 -23.53 16 24 O -0.38 -10.23 10.87 -126.22 -1.37 -11.60 16 25 C 0.01 0.18 7.91 72.63 0.57 0.76 16 26 C 0.01 0.13 8.07 72.63 0.59 0.71 16 27 O -0.39 -12.10 10.72 -126.22 -1.35 -13.45 16 28 H 0.05 2.07 8.06 -2.39 -0.02 2.05 16 29 H 0.08 2.11 8.14 -2.38 -0.02 2.09 16 30 H 0.07 2.38 8.05 -2.39 -0.02 2.36 16 31 H 0.16 4.17 8.06 -2.91 -0.02 4.14 16 32 H 0.17 4.49 8.06 -2.91 -0.02 4.47 16 33 H 0.15 3.71 8.05 -2.91 -0.02 3.68 16 34 H 0.16 3.12 8.06 -2.91 -0.02 3.09 16 35 H 0.15 3.60 8.06 -2.91 -0.02 3.57 16 36 H 0.12 5.17 5.64 -2.91 -0.02 5.15 16 37 H 0.27 15.66 8.31 -92.71 -0.77 14.89 16 38 H 0.13 6.70 7.70 -2.91 -0.02 6.68 16 39 H 0.09 1.19 8.14 -2.38 -0.02 1.18 16 40 H 0.14 1.28 8.14 -2.39 -0.02 1.26 16 41 H 0.13 1.54 8.14 -2.39 -0.02 1.52 16 42 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 Total: -1.00 -78.56 359.10 4.07 -74.49 By element: Atomic # 1 Polarization: 31.63 SS G_CDS: 1.04 Total: 32.68 kcal Atomic # 6 Polarization: -40.05 SS G_CDS: 5.25 Total: -34.80 kcal Atomic # 7 Polarization: -78.78 SS G_CDS: -1.35 Total: -80.13 kcal Atomic # 8 Polarization: -34.81 SS G_CDS: -2.90 Total: -37.71 kcal Atomic # 14 Polarization: 43.44 SS G_CDS: 2.03 Total: 45.47 kcal Total: -78.56 4.07 -74.49 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243586306.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.192 kcal (2) G-P(sol) polarization free energy of solvation -78.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.490 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds