Wall clock time and date at job start Tue Mar 31 2020 14:29:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50698 * 109.62587 * 2 1 4 4 C 1.38811 * 120.74403 * 90.33325 * 3 2 1 5 5 C 1.38237 * 119.37744 * 179.97438 * 4 3 2 6 6 N 1.31766 * 120.89686 * 0.02562 * 5 4 3 7 7 C 1.32693 * 121.61027 * 359.97438 * 6 5 4 8 8 C 1.48249 * 119.73247 * 180.27959 * 7 6 5 9 9 C 1.39473 * 120.05704 * 179.45090 * 8 7 6 10 10 C 1.37814 * 119.95011 * 179.69687 * 9 8 7 11 11 C 1.39021 * 120.05173 * 0.59743 * 10 9 8 12 12 O 1.35676 * 119.94583 * 179.69777 * 11 10 9 13 13 C 1.34817 * 116.99920 * 174.42858 * 12 11 10 14 14 H 1.08000 * 119.99853 * 5.06127 * 13 12 11 15 15 C 1.38656 * 119.99846 * 185.05790 * 13 12 11 16 16 N 1.31547 * 119.99934 * 359.97438 * 15 13 12 17 17 Si 1.86805 * 119.99791 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.46826 * 60.00333 * 17 15 13 19 19 H 1.48497 * 109.46939 * 179.97438 * 17 15 13 20 20 H 1.48499 * 109.47262 * 299.99753 * 17 15 13 21 21 C 1.39023 * 120.10785 * 359.67947 * 11 10 9 22 22 C 1.37818 * 120.05427 * 0.02562 * 21 11 10 23 23 C 1.38366 * 120.73915 * 270.30721 * 3 2 1 24 24 O 1.43756 * 109.50779 * 120.31242 * 2 1 3 25 25 C 1.44783 * 104.81327 * 95.49439 * 24 2 1 26 26 C 1.54918 * 101.72283 * 36.09991 * 25 24 2 27 27 O 1.43368 * 109.63255 * 239.60602 * 2 1 3 28 28 H 1.08991 * 109.47251 * 60.00149 * 1 2 3 29 29 H 1.09000 * 109.46742 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47039 * 300.00047 * 1 2 3 31 31 H 1.08004 * 120.30912 * 359.97438 * 4 3 2 32 32 H 1.08003 * 119.55233 * 180.02562 * 5 4 3 33 33 H 1.08005 * 120.02305 * 359.97412 * 9 8 7 34 34 H 1.07993 * 119.97248 * 180.27198 * 10 9 8 35 35 H 0.97001 * 119.99588 * 179.97438 * 16 15 13 36 36 H 1.07991 * 119.97217 * 179.97438 * 21 11 10 37 37 H 1.07998 * 120.02788 * 180.02562 * 22 21 11 38 38 H 1.07999 * 120.46871 * 359.97438 * 23 3 2 39 39 H 1.08999 * 110.98186 * 277.99670 * 25 24 2 40 40 H 1.09002 * 110.97971 * 154.20546 * 25 24 2 41 41 H 1.08996 * 110.69709 * 206.03842 * 26 25 24 42 42 H 1.09000 * 110.84164 * 82.90620 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0362 1.4194 0.0000 4 6 2.2811 2.0855 1.1930 5 6 2.7456 3.3871 1.1600 6 7 2.9574 4.0010 0.0136 7 6 2.7360 3.4000 -1.1486 8 6 2.9944 4.1281 -2.4138 9 6 2.7749 3.4990 -3.6391 10 6 3.0099 4.1800 -4.8140 11 6 3.4774 5.4888 -4.7786 12 8 3.7139 6.1550 -5.9365 13 6 4.0546 7.4555 -5.8358 14 1 4.2084 7.8997 -4.8634 15 6 4.2076 8.2228 -6.9805 16 7 4.0208 7.6816 -8.1649 17 14 4.6805 10.0246 -6.8409 18 1 5.9917 10.1404 -6.1535 19 1 4.7802 10.6168 -8.1990 20 1 3.6460 10.7487 -6.0593 21 6 3.7025 6.1161 -3.5585 22 6 3.4632 5.4413 -2.3809 23 6 2.2677 2.0877 -1.1892 24 8 2.0101 -0.6839 1.1698 25 6 2.2600 -2.0402 0.7292 26 6 2.7855 -1.8118 -0.7102 27 8 2.0117 -0.6832 -1.1648 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 2.1103 1.5914 2.1381 32 1 2.9374 3.9078 2.0866 33 1 2.4166 2.4805 -3.6672 34 1 2.8358 3.6947 -5.7629 35 1 4.1275 8.2186 -8.9657 36 1 4.0660 7.1327 -3.5336 37 1 3.6378 5.9292 -1.4334 38 1 2.0886 1.5993 -2.1357 39 1 1.3394 -2.6236 0.7203 40 1 3.0176 -2.5188 1.3497 41 1 2.5949 -2.6856 -1.3331 42 1 3.8487 -1.5714 -0.7013 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243591115.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:29:54 Heat of formation + Delta-G solvation = -67.978372 kcal Electronic energy + Delta-G solvation = -26535.417828 eV Core-core repulsion = 22638.802588 eV Total energy + Delta-G solvation = -3896.615240 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.130 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.00503 -41.05785 -40.40881 -38.17147 -36.13529 -34.82238 -34.38330 -33.01847 -32.02409 -31.25249 -29.58630 -29.43735 -27.43715 -25.47525 -24.90458 -24.03018 -23.38180 -22.75115 -21.48220 -19.89948 -19.14529 -18.49835 -18.14836 -17.28015 -16.92086 -16.80729 -16.44541 -16.21634 -16.00190 -15.68769 -15.56618 -15.22061 -15.13475 -14.94706 -14.63932 -14.53345 -14.18439 -14.06092 -13.90812 -13.56639 -13.34975 -13.18028 -13.05969 -12.95690 -12.58739 -12.56049 -12.37827 -12.25480 -12.14849 -11.27427 -11.18180 -11.06485 -10.92022 -10.69949 -10.32296 -10.26062 -9.88530 -8.72766 -8.50619 -6.17632 -0.28589 0.21237 0.55997 0.92233 1.35566 1.46556 1.51629 2.16435 2.33305 2.60156 2.72184 2.96372 3.23418 3.26156 3.41566 3.48408 3.67531 3.85462 3.97746 4.06388 4.08943 4.12482 4.16051 4.18150 4.23248 4.45121 4.48895 4.54060 4.63422 4.68672 4.70174 4.74628 4.79237 4.91157 4.96210 5.01627 5.09669 5.11950 5.20256 5.27278 5.45041 5.62567 5.68115 5.78370 5.98254 6.04008 6.07801 6.93461 7.04414 7.70031 8.71469 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.026339 B = 0.002380 C = 0.002242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1062.806488 B =11762.015662 C =12487.701369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.300 3.700 3 C -0.061 4.061 4 C -0.156 4.156 5 C 0.100 3.900 6 N -0.507 5.507 7 C 0.177 3.823 8 C -0.146 4.146 9 C -0.041 4.041 10 C -0.201 4.201 11 C 0.131 3.869 12 O -0.220 6.220 13 C -0.418 4.418 14 H 0.103 0.897 15 C -0.018 4.018 16 N -0.915 5.915 17 Si 1.018 2.982 18 H -0.257 1.257 19 H -0.270 1.270 20 H -0.257 1.257 21 C -0.247 4.247 22 C -0.029 4.029 23 C -0.151 4.151 24 O -0.379 6.379 25 C 0.015 3.985 26 C 0.010 3.990 27 O -0.390 6.390 28 H 0.072 0.928 29 H 0.085 0.915 30 H 0.084 0.916 31 H 0.159 0.841 32 H 0.187 0.813 33 H 0.152 0.848 34 H 0.126 0.874 35 H 0.275 0.725 36 H 0.125 0.875 37 H 0.136 0.864 38 H 0.143 0.857 39 H 0.096 0.904 40 H 0.132 0.868 41 H 0.126 0.874 42 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.305 -19.348 21.018 29.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.223 3.777 3 C -0.070 4.070 4 C -0.176 4.176 5 C -0.058 4.058 6 N -0.217 5.217 7 C 0.042 3.958 8 C -0.147 4.147 9 C -0.059 4.059 10 C -0.220 4.220 11 C 0.079 3.921 12 O -0.125 6.125 13 C -0.493 4.493 14 H 0.121 0.879 15 C -0.217 4.217 16 N -0.552 5.552 17 Si 0.837 3.163 18 H -0.181 1.181 19 H -0.194 1.194 20 H -0.182 1.182 21 C -0.266 4.266 22 C -0.048 4.048 23 C -0.171 4.171 24 O -0.300 6.300 25 C -0.061 4.061 26 C -0.065 4.065 27 O -0.312 6.312 28 H 0.091 0.909 29 H 0.104 0.896 30 H 0.102 0.898 31 H 0.177 0.823 32 H 0.204 0.796 33 H 0.170 0.830 34 H 0.144 0.856 35 H 0.084 0.916 36 H 0.143 0.857 37 H 0.153 0.847 38 H 0.161 0.839 39 H 0.114 0.886 40 H 0.150 0.850 41 H 0.144 0.856 42 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -5.013 -18.363 20.561 28.020 hybrid contribution 0.092 -0.001 -0.470 0.479 sum -4.921 -18.364 20.091 27.660 Atomic orbital electron populations 1.22330 0.91108 1.04541 1.04005 1.21836 0.93684 0.86540 0.75613 1.20397 0.97364 0.95519 0.93673 1.22119 1.00598 0.95821 0.99064 1.23226 0.94076 0.92353 0.96147 1.67622 1.16758 1.38796 0.98549 1.19662 0.94286 0.90767 0.91037 1.18315 1.10387 0.95020 0.91017 1.21010 0.95760 0.99450 0.89720 1.20356 1.09058 0.93039 0.99551 1.20030 0.92504 0.92989 0.86556 1.83921 1.76238 1.24707 1.27618 1.21841 1.48581 0.83160 0.95764 0.87927 1.26602 0.96275 1.05359 0.93452 1.70164 1.47363 1.39132 0.98549 0.84653 0.79555 0.73656 0.78418 1.18136 1.19434 1.18165 1.21213 1.11171 1.02171 0.92062 1.21036 0.93334 0.93284 0.97116 1.21825 1.01189 0.94424 0.99690 1.89232 1.86278 1.23418 1.31033 1.24674 1.03162 0.83609 0.94620 1.24480 0.96417 0.89459 0.96175 1.88925 1.70068 1.42896 1.29301 0.90906 0.89620 0.89751 0.82342 0.79632 0.83050 0.85563 0.91605 0.85690 0.84654 0.83929 0.88572 0.84976 0.85624 0.90901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.52 9.17 71.98 0.66 -1.86 16 2 C 0.30 5.74 1.27 29.85 0.04 5.78 16 3 C -0.06 -1.45 4.97 -19.70 -0.10 -1.55 16 4 C -0.16 -3.31 9.44 22.41 0.21 -3.09 16 5 C 0.10 2.33 11.17 84.70 0.95 3.27 16 6 N -0.51 -15.74 9.43 -184.88 -1.74 -17.48 16 7 C 0.18 5.78 6.73 41.96 0.28 6.06 16 8 C -0.15 -5.43 5.88 -20.02 -0.12 -5.54 16 9 C -0.04 -1.48 9.41 22.47 0.21 -1.26 16 10 C -0.20 -8.70 9.98 22.36 0.22 -8.47 16 11 C 0.13 6.65 6.65 22.65 0.15 6.80 16 12 O -0.22 -13.22 9.75 -21.79 -0.21 -13.43 16 13 C -0.42 -24.37 9.48 67.92 0.64 -23.73 16 14 H 0.10 5.52 5.19 -2.91 -0.02 5.50 16 15 C -0.02 -1.04 5.49 84.84 0.47 -0.58 16 16 N -0.92 -55.77 13.67 21.61 0.30 -55.48 16 17 Si 1.02 42.78 29.55 68.60 2.03 44.81 16 18 H -0.26 -10.18 7.11 99.48 0.71 -9.47 16 19 H -0.27 -10.85 7.11 99.48 0.71 -10.14 16 20 H -0.26 -10.20 7.11 99.48 0.71 -9.50 16 21 C -0.25 -11.35 9.15 22.36 0.20 -11.15 16 22 C -0.03 -1.16 9.57 22.47 0.21 -0.94 16 23 C -0.15 -4.23 8.78 22.58 0.20 -4.04 16 24 O -0.38 -6.34 10.08 -126.22 -1.27 -7.61 16 25 C 0.01 0.14 7.91 72.64 0.57 0.71 16 26 C 0.01 0.13 8.07 72.64 0.59 0.71 16 27 O -0.39 -7.81 9.97 -126.22 -1.26 -9.07 16 28 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 29 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 30 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 31 H 0.16 2.56 7.58 -2.91 -0.02 2.54 16 32 H 0.19 2.98 8.06 -2.91 -0.02 2.96 16 33 H 0.15 4.39 6.17 -2.91 -0.02 4.37 16 34 H 0.13 5.23 8.06 -2.91 -0.02 5.20 16 35 H 0.27 15.33 8.31 -92.71 -0.77 14.56 16 36 H 0.13 5.75 5.62 -2.92 -0.02 5.73 16 37 H 0.14 4.97 7.53 -2.91 -0.02 4.95 16 38 H 0.14 3.79 5.73 -2.91 -0.02 3.77 16 39 H 0.10 0.56 8.14 -2.39 -0.02 0.54 16 40 H 0.13 0.64 8.14 -2.39 -0.02 0.62 16 41 H 0.13 0.91 8.14 -2.39 -0.02 0.89 16 42 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 Total: -1.00 -74.57 356.13 4.29 -70.28 By element: Atomic # 1 Polarization: 25.78 SS G_CDS: 1.06 Total: 26.84 kcal Atomic # 6 Polarization: -44.25 SS G_CDS: 5.40 Total: -38.86 kcal Atomic # 7 Polarization: -71.51 SS G_CDS: -1.45 Total: -72.96 kcal Atomic # 8 Polarization: -27.37 SS G_CDS: -2.74 Total: -30.11 kcal Atomic # 14 Polarization: 42.78 SS G_CDS: 2.03 Total: 44.81 kcal Total: -74.57 4.29 -70.28 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243591115.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.297 kcal (2) G-P(sol) polarization free energy of solvation -74.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.276 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds