Wall clock time and date at job start Tue Mar 31 2020 14:29:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50692 * 109.50987 * 2 1 4 4 C 1.38321 * 119.48201 * 179.34364 * 3 2 1 5 5 C 1.38405 * 119.28983 * 179.73178 * 4 3 2 6 6 C 1.39810 * 118.30362 * 0.53393 * 5 4 3 7 7 C 1.48329 * 120.53536 * 179.70957 * 6 5 4 8 8 C 1.39435 * 120.05555 * 359.74465 * 7 6 5 9 9 C 1.37839 * 119.94437 * 179.76915 * 8 7 6 10 10 C 1.38991 * 120.05602 * 0.52701 * 9 8 7 11 11 O 1.35700 * 119.95297 * 179.72099 * 10 9 8 12 12 C 1.34808 * 117.00345 * 174.43065 * 11 10 9 13 13 H 1.08000 * 120.00187 * 5.05756 * 12 11 10 14 14 C 1.38654 * 120.00365 * 185.05802 * 12 11 10 15 15 N 1.31550 * 120.00036 * 180.02562 * 14 12 11 16 16 Si 1.86804 * 119.99331 * 0.02562 * 14 12 11 17 17 H 1.48502 * 109.47145 * 90.00109 * 16 14 12 18 18 H 1.48502 * 109.46824 * 209.99774 * 16 14 12 19 19 H 1.48491 * 109.47410 * 329.99526 * 16 14 12 20 20 C 1.39006 * 120.10284 * 359.70513 * 10 9 8 21 21 C 1.37837 * 120.05360 * 0.04227 * 20 10 9 22 22 C 1.39339 * 118.92064 * 359.73056 * 6 5 4 23 23 N 1.31734 * 120.58997 * 359.97438 * 22 6 5 24 24 O 1.43366 * 109.63173 * 120.32223 * 2 1 3 25 25 C 1.44193 * 107.28980 * 119.20591 * 24 2 1 26 26 C 1.54914 * 103.23234 * 338.47558 * 25 24 2 27 27 O 1.43751 * 109.62977 * 239.68183 * 2 1 3 28 28 H 1.09004 * 109.47018 * 300.38304 * 1 2 3 29 29 H 1.09004 * 109.47091 * 60.38147 * 1 2 3 30 30 H 1.08994 * 109.47427 * 180.38291 * 1 2 3 31 31 H 1.08004 * 120.35887 * 359.97438 * 4 3 2 32 32 H 1.07997 * 120.85035 * 180.24246 * 5 4 3 33 33 H 1.07997 * 120.02247 * 0.02562 * 8 7 6 34 34 H 1.08006 * 119.96826 * 180.23022 * 9 8 7 35 35 H 0.97005 * 119.99279 * 180.02562 * 15 14 12 36 36 H 1.08001 * 119.97348 * 180.02562 * 20 10 9 37 37 H 1.07998 * 120.02963 * 180.02562 * 21 20 10 38 38 H 1.08005 * 119.70300 * 179.97438 * 22 6 5 39 39 H 1.08994 * 110.69178 * 96.96638 * 25 24 2 40 40 H 1.09002 * 110.69364 * 219.99516 * 25 24 2 41 41 H 1.09000 * 110.96999 * 153.75543 * 26 25 24 42 42 H 1.09000 * 110.97899 * 277.53742 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0333 1.4204 0.0000 4 6 3.3955 1.6600 0.0138 5 6 3.8534 2.9660 0.0081 6 6 2.9111 3.9988 -0.0001 7 6 3.3470 5.4167 0.0000 8 6 4.7057 5.7296 0.0137 9 6 5.1082 7.0479 0.0090 10 6 4.1609 8.0650 0.0016 11 8 4.5595 9.3621 0.0027 12 6 3.5973 10.2982 -0.1212 13 1 2.5577 10.0057 -0.1333 14 6 3.9423 11.6364 -0.2331 15 7 3.0033 12.5499 -0.3535 16 14 5.7405 12.1421 -0.2130 17 1 6.2691 12.1462 -1.6007 18 1 5.8654 13.5029 0.3683 19 1 6.5162 11.1795 0.6095 20 6 2.8058 7.7555 -0.0071 21 6 2.3984 6.4387 -0.0077 22 6 1.5560 3.6746 -0.0079 23 7 1.1679 2.4157 -0.0081 24 8 2.0117 -0.6817 1.1656 25 6 2.7884 -1.8089 0.7125 26 6 2.2661 -2.0438 -0.7269 27 8 2.0129 -0.6835 -1.1688 28 1 -0.3633 0.5198 0.8866 29 1 -0.3633 0.5079 -0.8934 30 1 -0.3634 -1.0276 0.0069 31 1 4.0945 0.8366 0.0249 32 1 4.9116 3.1819 0.0146 33 1 5.4420 4.9396 0.0238 34 1 6.1606 7.2907 0.0158 35 1 3.2448 13.4861 -0.4322 36 1 2.0715 8.5474 -0.0132 37 1 1.3454 6.1987 -0.0149 38 1 0.8172 4.4624 -0.0139 39 1 3.8507 -1.5653 0.7020 40 1 2.6010 -2.6821 1.3375 41 1 3.0260 -2.5230 -1.3443 42 1 1.3467 -2.6291 -0.7178 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243591657.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:29:37 Heat of formation + Delta-G solvation = -44.800921 kcal Electronic energy + Delta-G solvation = -26256.037410 eV Core-core repulsion = 22360.427220 eV Total energy + Delta-G solvation = -3895.610190 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.130 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.15959 -39.92423 -39.07926 -36.84582 -35.31507 -33.47032 -32.52190 -32.27520 -31.02610 -30.37791 -28.80734 -27.94374 -25.58759 -24.20531 -23.68868 -23.57559 -21.90094 -21.35167 -20.51610 -18.15830 -17.96423 -17.59950 -17.26385 -16.39719 -16.22223 -15.89807 -15.27149 -14.88213 -14.54164 -14.14218 -14.10308 -14.04229 -13.85714 -13.84256 -13.48968 -13.35635 -13.10857 -12.92962 -12.44653 -12.38181 -12.33307 -12.29140 -12.13907 -11.75276 -11.70372 -11.19133 -10.99097 -10.82173 -10.56918 -10.31615 -10.17139 -9.82606 -9.55683 -9.31872 -9.28620 -8.84855 -8.46038 -7.23322 -6.56751 -4.21266 0.74511 1.32617 2.00224 2.22778 3.11376 3.15387 3.18128 3.31050 3.36721 3.93557 4.11538 4.17751 4.35070 4.45565 4.46313 4.51500 4.64914 4.74257 4.85382 4.94596 4.96949 5.00155 5.02736 5.08030 5.24682 5.32875 5.38099 5.46071 5.55324 5.55946 5.69629 5.76393 5.96962 5.98992 6.09112 6.12802 6.26393 6.41649 6.61819 6.66017 6.75834 6.92414 7.05849 7.12374 7.41828 7.64468 7.87062 7.98874 8.76986 9.36996 10.49773 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.038429 B = 0.002118 C = 0.002040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 728.444444 B =13217.586685 C =13725.042987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.313 3.687 3 C 0.083 3.917 4 C -0.124 4.124 5 C -0.096 4.096 6 C -0.035 4.035 7 C -0.156 4.156 8 C -0.055 4.055 9 C -0.193 4.193 10 C 0.168 3.832 11 O -0.206 6.206 12 C -0.391 4.391 13 H 0.110 0.890 14 C 0.065 3.935 15 N -0.870 5.870 16 Si 0.907 3.093 17 H -0.272 1.272 18 H -0.280 1.280 19 H -0.259 1.259 20 C -0.222 4.222 21 C -0.049 4.049 22 C 0.087 3.913 23 N -0.454 5.454 24 O -0.369 6.369 25 C 0.017 3.983 26 C 0.014 3.986 27 O -0.365 6.365 28 H 0.080 0.920 29 H 0.081 0.919 30 H 0.056 0.944 31 H 0.127 0.873 32 H 0.137 0.863 33 H 0.117 0.883 34 H 0.121 0.879 35 H 0.282 0.718 36 H 0.138 0.862 37 H 0.116 0.884 38 H 0.161 0.839 39 H 0.076 0.924 40 H 0.102 0.898 41 H 0.111 0.889 42 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.041 -26.293 0.572 26.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.236 3.764 3 C -0.055 4.055 4 C -0.144 4.144 5 C -0.121 4.121 6 C -0.037 4.037 7 C -0.158 4.158 8 C -0.073 4.073 9 C -0.212 4.212 10 C 0.114 3.886 11 O -0.110 6.110 12 C -0.466 4.466 13 H 0.127 0.873 14 C -0.140 4.140 15 N -0.506 5.506 16 Si 0.732 3.268 17 H -0.197 1.197 18 H -0.206 1.206 19 H -0.183 1.183 20 C -0.241 4.241 21 C -0.067 4.067 22 C -0.072 4.072 23 N -0.164 5.164 24 O -0.290 6.290 25 C -0.060 4.060 26 C -0.062 4.062 27 O -0.285 6.285 28 H 0.098 0.902 29 H 0.100 0.900 30 H 0.075 0.925 31 H 0.145 0.855 32 H 0.154 0.846 33 H 0.135 0.865 34 H 0.139 0.861 35 H 0.092 0.908 36 H 0.155 0.845 37 H 0.134 0.866 38 H 0.178 0.822 39 H 0.095 0.905 40 H 0.120 0.880 41 H 0.129 0.871 42 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -0.702 -25.966 0.564 25.982 hybrid contribution 1.552 0.478 -0.029 1.624 sum 0.850 -25.488 0.536 25.508 Atomic orbital electron populations 1.22117 0.92027 1.01923 1.04669 1.21670 0.93439 0.86338 0.75000 1.20613 0.90090 0.93352 1.01412 1.21638 0.96071 0.97290 0.99379 1.21598 1.00235 0.91616 0.98685 1.19883 0.94133 0.93607 0.96108 1.18115 0.93533 0.90037 1.14097 1.20683 0.94375 0.95114 0.97125 1.20140 0.98602 0.90893 1.11581 1.19250 0.92426 0.84558 0.92331 1.83548 1.37287 1.11667 1.78455 1.20837 0.88683 0.85614 1.51458 0.87278 1.24519 0.99984 0.94207 0.95276 1.69640 1.33181 1.01838 1.45927 0.86160 0.83203 0.78120 0.79346 1.19697 1.20578 1.18257 1.21229 0.96052 0.96802 1.10039 1.20868 0.98171 0.91840 0.95871 1.22815 0.94066 0.92551 0.97735 1.67162 1.38940 0.99820 1.10483 1.88990 1.69416 1.41562 1.29017 1.24227 0.96715 0.89882 0.95130 1.24491 1.01669 0.85086 0.94971 1.89406 1.86151 1.21538 1.31396 0.90159 0.90045 0.92460 0.85529 0.84564 0.86500 0.86096 0.90750 0.84450 0.86577 0.82230 0.90538 0.88019 0.87141 0.90340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.66 8.40 37.16 0.31 -1.34 16 2 C 0.31 3.79 1.19 -27.89 -0.03 3.75 16 3 C 0.08 1.17 6.08 -82.54 -0.50 0.67 16 4 C -0.12 -1.61 9.49 -39.49 -0.37 -1.98 16 5 C -0.10 -1.27 9.54 -38.93 -0.37 -1.64 16 6 C -0.04 -0.53 5.89 -104.75 -0.62 -1.14 16 7 C -0.16 -2.56 5.88 -104.85 -0.62 -3.18 16 8 C -0.05 -0.88 9.43 -39.28 -0.37 -1.26 16 9 C -0.19 -3.59 9.98 -39.45 -0.39 -3.99 16 10 C 0.17 3.68 6.65 -39.02 -0.26 3.42 16 11 O -0.21 -5.18 8.58 0.27 0.00 -5.18 16 12 C -0.39 -10.53 9.94 30.89 0.31 -10.23 16 13 H 0.11 2.99 5.42 -52.49 -0.28 2.70 16 14 C 0.06 1.75 5.49 -17.52 -0.10 1.66 16 15 N -0.87 -24.19 13.96 55.48 0.77 -23.42 16 16 Si 0.91 20.80 28.62 -169.99 -4.86 15.94 16 17 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 18 H -0.28 -6.21 7.11 56.52 0.40 -5.80 16 19 H -0.26 -5.94 7.11 56.52 0.40 -5.54 16 20 C -0.22 -4.52 9.15 -39.44 -0.36 -4.88 16 21 C -0.05 -0.85 9.43 -39.28 -0.37 -1.22 16 22 C 0.09 1.27 10.60 -17.18 -0.18 1.09 16 23 N -0.45 -6.77 8.97 -9.19 -0.08 -6.85 16 24 O -0.37 -4.20 10.71 -59.04 -0.63 -4.83 16 25 C 0.02 0.12 8.06 38.17 0.31 0.43 16 26 C 0.01 0.10 7.95 38.17 0.30 0.40 16 27 O -0.36 -4.12 10.89 -59.04 -0.64 -4.76 16 28 H 0.08 0.93 8.05 -51.93 -0.42 0.51 16 29 H 0.08 0.94 8.06 -51.93 -0.42 0.52 16 30 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 31 H 0.13 1.37 8.06 -52.48 -0.42 0.94 16 32 H 0.14 1.51 6.32 -52.49 -0.33 1.17 16 33 H 0.12 1.52 6.27 -52.49 -0.33 1.19 16 34 H 0.12 2.07 8.06 -52.48 -0.42 1.64 16 35 H 0.28 7.24 8.31 -40.82 -0.34 6.90 16 36 H 0.14 2.92 5.62 -52.49 -0.30 2.62 16 37 H 0.12 1.68 6.23 -52.49 -0.33 1.35 16 38 H 0.16 2.05 6.22 -52.48 -0.33 1.72 16 39 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 40 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.11 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 LS Contribution 353.53 15.07 5.33 5.33 Total: -1.00 -30.55 353.53 -8.26 -38.81 By element: Atomic # 1 Polarization: 9.26 SS G_CDS: -4.82 Total: 4.43 kcal Atomic # 6 Polarization: -16.14 SS G_CDS: -3.32 Total: -19.46 kcal Atomic # 7 Polarization: -30.96 SS G_CDS: 0.69 Total: -30.27 kcal Atomic # 8 Polarization: -13.50 SS G_CDS: -1.27 Total: -14.77 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -4.86 Total: 15.94 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -30.55 -8.26 -38.81 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243591657.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.994 kcal (2) G-P(sol) polarization free energy of solvation -30.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.807 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds