Wall clock time and date at job start Tue Mar 31 2020 14:29:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50692 * 109.50987 * 2 1 4 4 C 1.38321 * 119.48201 * 179.34364 * 3 2 1 5 5 C 1.38405 * 119.28983 * 179.73178 * 4 3 2 6 6 C 1.39810 * 118.30362 * 0.53393 * 5 4 3 7 7 C 1.48329 * 120.53536 * 179.70957 * 6 5 4 8 8 C 1.39435 * 120.05555 * 359.74465 * 7 6 5 9 9 C 1.37839 * 119.94437 * 179.76915 * 8 7 6 10 10 C 1.38991 * 120.05602 * 0.52701 * 9 8 7 11 11 O 1.35700 * 119.95297 * 179.72099 * 10 9 8 12 12 C 1.34808 * 117.00345 * 174.43065 * 11 10 9 13 13 H 1.08000 * 120.00187 * 5.05756 * 12 11 10 14 14 C 1.38654 * 120.00365 * 185.05802 * 12 11 10 15 15 N 1.31550 * 120.00036 * 180.02562 * 14 12 11 16 16 Si 1.86804 * 119.99331 * 0.02562 * 14 12 11 17 17 H 1.48502 * 109.47145 * 90.00109 * 16 14 12 18 18 H 1.48502 * 109.46824 * 209.99774 * 16 14 12 19 19 H 1.48491 * 109.47410 * 329.99526 * 16 14 12 20 20 C 1.39006 * 120.10284 * 359.70513 * 10 9 8 21 21 C 1.37837 * 120.05360 * 0.04227 * 20 10 9 22 22 C 1.39339 * 118.92064 * 359.73056 * 6 5 4 23 23 N 1.31734 * 120.58997 * 359.97438 * 22 6 5 24 24 O 1.43366 * 109.63173 * 120.32223 * 2 1 3 25 25 C 1.44193 * 107.28980 * 119.20591 * 24 2 1 26 26 C 1.54914 * 103.23234 * 338.47558 * 25 24 2 27 27 O 1.43751 * 109.62977 * 239.68183 * 2 1 3 28 28 H 1.09004 * 109.47018 * 300.38304 * 1 2 3 29 29 H 1.09004 * 109.47091 * 60.38147 * 1 2 3 30 30 H 1.08994 * 109.47427 * 180.38291 * 1 2 3 31 31 H 1.08004 * 120.35887 * 359.97438 * 4 3 2 32 32 H 1.07997 * 120.85035 * 180.24246 * 5 4 3 33 33 H 1.07997 * 120.02247 * 0.02562 * 8 7 6 34 34 H 1.08006 * 119.96826 * 180.23022 * 9 8 7 35 35 H 0.97005 * 119.99279 * 180.02562 * 15 14 12 36 36 H 1.08001 * 119.97348 * 180.02562 * 20 10 9 37 37 H 1.07998 * 120.02963 * 180.02562 * 21 20 10 38 38 H 1.08005 * 119.70300 * 179.97438 * 22 6 5 39 39 H 1.08994 * 110.69178 * 96.96638 * 25 24 2 40 40 H 1.09002 * 110.69364 * 219.99516 * 25 24 2 41 41 H 1.09000 * 110.96999 * 153.75543 * 26 25 24 42 42 H 1.09000 * 110.97899 * 277.53742 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0333 1.4204 0.0000 4 6 3.3955 1.6600 0.0138 5 6 3.8534 2.9660 0.0081 6 6 2.9111 3.9988 -0.0001 7 6 3.3470 5.4167 0.0000 8 6 4.7057 5.7296 0.0137 9 6 5.1082 7.0479 0.0090 10 6 4.1609 8.0650 0.0016 11 8 4.5595 9.3621 0.0027 12 6 3.5973 10.2982 -0.1212 13 1 2.5577 10.0057 -0.1333 14 6 3.9423 11.6364 -0.2331 15 7 3.0033 12.5499 -0.3535 16 14 5.7405 12.1421 -0.2130 17 1 6.2691 12.1462 -1.6007 18 1 5.8654 13.5029 0.3683 19 1 6.5162 11.1795 0.6095 20 6 2.8058 7.7555 -0.0071 21 6 2.3984 6.4387 -0.0077 22 6 1.5560 3.6746 -0.0079 23 7 1.1679 2.4157 -0.0081 24 8 2.0117 -0.6817 1.1656 25 6 2.7884 -1.8089 0.7125 26 6 2.2661 -2.0438 -0.7269 27 8 2.0129 -0.6835 -1.1688 28 1 -0.3633 0.5198 0.8866 29 1 -0.3633 0.5079 -0.8934 30 1 -0.3634 -1.0276 0.0069 31 1 4.0945 0.8366 0.0249 32 1 4.9116 3.1819 0.0146 33 1 5.4420 4.9396 0.0238 34 1 6.1606 7.2907 0.0158 35 1 3.2448 13.4861 -0.4322 36 1 2.0715 8.5474 -0.0132 37 1 1.3454 6.1987 -0.0149 38 1 0.8172 4.4624 -0.0139 39 1 3.8507 -1.5653 0.7020 40 1 2.6010 -2.6821 1.3375 41 1 3.0260 -2.5230 -1.3443 42 1 1.3467 -2.6291 -0.7178 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243591657.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:29:36 Heat of formation + Delta-G solvation = -63.043188 kcal Electronic energy + Delta-G solvation = -26256.828455 eV Core-core repulsion = 22360.427220 eV Total energy + Delta-G solvation = -3896.401234 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.130 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.03159 -41.12859 -40.47157 -38.37242 -36.06872 -34.73581 -34.26772 -33.31283 -32.16735 -31.77100 -29.55990 -29.20835 -27.32157 -25.39669 -24.90508 -24.14458 -23.24061 -22.55408 -21.79058 -19.81455 -19.36425 -18.73028 -18.08296 -17.52353 -17.35308 -16.83413 -16.47845 -16.19450 -15.78559 -15.66764 -15.47599 -15.27378 -14.94834 -14.86859 -14.63867 -14.46951 -14.18203 -14.05206 -13.87914 -13.86955 -13.59492 -13.25663 -13.17250 -12.93473 -12.68957 -12.62431 -12.40465 -12.29204 -11.98689 -11.35918 -11.18767 -11.13097 -11.00966 -10.80689 -10.38080 -10.29716 -9.91371 -8.73861 -8.52581 -6.24529 -0.43435 0.26575 0.51794 0.85728 1.32259 1.36218 1.52097 2.26601 2.31212 2.52688 2.74586 2.94775 3.04320 3.20386 3.42637 3.52454 3.68831 3.73491 3.82897 3.88015 4.04385 4.06324 4.13197 4.18799 4.20973 4.38460 4.48183 4.54354 4.61623 4.71275 4.74523 4.74898 4.76943 4.84856 4.94064 5.04089 5.12198 5.19600 5.24032 5.30438 5.49931 5.63211 5.68397 5.75182 5.83059 6.03524 6.13462 6.80929 6.89838 7.52364 8.58346 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.038429 B = 0.002118 C = 0.002040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 728.444444 B =13217.586685 C =13725.042987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.312 3.688 3 C 0.077 3.923 4 C -0.129 4.129 5 C -0.082 4.082 6 C -0.060 4.060 7 C -0.129 4.129 8 C -0.049 4.049 9 C -0.188 4.188 10 C 0.131 3.869 11 O -0.237 6.237 12 C -0.401 4.401 13 H 0.084 0.916 14 C 0.011 3.989 15 N -0.919 5.919 16 Si 0.971 3.029 17 H -0.265 1.265 18 H -0.268 1.268 19 H -0.260 1.260 20 C -0.236 4.236 21 C -0.055 4.055 22 C 0.083 3.917 23 N -0.473 5.473 24 O -0.389 6.389 25 C 0.010 3.990 26 C 0.010 3.990 27 O -0.385 6.385 28 H 0.068 0.932 29 H 0.071 0.929 30 H 0.076 0.924 31 H 0.152 0.848 32 H 0.165 0.835 33 H 0.162 0.838 34 H 0.138 0.862 35 H 0.286 0.714 36 H 0.115 0.885 37 H 0.140 0.860 38 H 0.169 0.831 39 H 0.087 0.913 40 H 0.127 0.873 41 H 0.137 0.863 42 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.012 -30.802 0.622 30.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.234 3.766 3 C -0.061 4.061 4 C -0.149 4.149 5 C -0.108 4.108 6 C -0.062 4.062 7 C -0.131 4.131 8 C -0.067 4.067 9 C -0.207 4.207 10 C 0.081 3.919 11 O -0.143 6.143 12 C -0.477 4.477 13 H 0.102 0.898 14 C -0.188 4.188 15 N -0.559 5.559 16 Si 0.793 3.207 17 H -0.190 1.190 18 H -0.193 1.193 19 H -0.185 1.185 20 C -0.255 4.255 21 C -0.073 4.073 22 C -0.075 4.075 23 N -0.183 5.183 24 O -0.310 6.310 25 C -0.065 4.065 26 C -0.065 4.065 27 O -0.306 6.306 28 H 0.087 0.913 29 H 0.089 0.911 30 H 0.095 0.905 31 H 0.170 0.830 32 H 0.183 0.817 33 H 0.179 0.821 34 H 0.156 0.844 35 H 0.095 0.905 36 H 0.133 0.867 37 H 0.158 0.842 38 H 0.186 0.814 39 H 0.105 0.895 40 H 0.145 0.855 41 H 0.154 0.846 42 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 1.262 -30.548 0.617 30.581 hybrid contribution 0.817 1.176 -0.034 1.433 sum 2.079 -29.372 0.583 29.451 Atomic orbital electron populations 1.22070 0.91956 1.02865 1.03594 1.21608 0.93597 0.85652 0.75725 1.21228 0.90888 0.94352 0.99643 1.21937 0.96070 0.98022 0.98822 1.21940 1.01315 0.91156 0.96352 1.19811 0.94738 0.92868 0.98753 1.18413 0.93627 0.90783 1.10232 1.21137 0.95141 0.95072 0.95335 1.20475 0.98949 0.91037 1.10261 1.19812 0.93818 0.84344 0.93960 1.83501 1.36439 1.12507 1.81872 1.20736 0.88321 0.86650 1.52040 0.89824 1.25314 1.04141 0.94112 0.95282 1.69727 1.35009 1.02237 1.48889 0.85209 0.78082 0.77936 0.79469 1.19020 1.19306 1.18458 1.21231 0.95494 0.97769 1.10976 1.21112 0.99994 0.90703 0.95480 1.23051 0.94490 0.92974 0.96955 1.67236 1.39552 1.00051 1.11446 1.88969 1.70124 1.42870 1.29009 1.24545 0.96842 0.89480 0.95673 1.24810 1.03198 0.83311 0.95175 1.89377 1.86186 1.23717 1.31271 0.91256 0.91051 0.90538 0.83031 0.81722 0.82100 0.84409 0.90462 0.86731 0.84195 0.81409 0.89472 0.85500 0.84553 0.89062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.03 8.40 71.98 0.60 -2.43 16 2 C 0.31 6.78 1.19 29.85 0.04 6.82 16 3 C 0.08 1.97 6.08 42.57 0.26 2.23 16 4 C -0.13 -2.85 9.49 22.33 0.21 -2.64 16 5 C -0.08 -1.82 9.54 22.69 0.22 -1.61 16 6 C -0.06 -1.59 5.89 -19.95 -0.12 -1.71 16 7 C -0.13 -3.91 5.88 -20.01 -0.12 -4.03 16 8 C -0.05 -1.42 9.43 22.46 0.21 -1.21 16 9 C -0.19 -6.72 9.98 22.36 0.22 -6.50 16 10 C 0.13 5.86 6.65 22.63 0.15 6.01 16 11 O -0.24 -12.42 8.58 -21.96 -0.19 -12.60 16 12 C -0.40 -23.07 9.94 67.92 0.68 -22.40 16 13 H 0.08 5.03 5.42 -2.91 -0.02 5.02 16 14 C 0.01 0.60 5.49 84.83 0.47 1.07 16 15 N -0.92 -53.99 13.96 21.61 0.30 -53.69 16 16 Si 0.97 44.31 28.62 68.60 1.96 46.27 16 17 H -0.27 -11.64 7.11 99.48 0.71 -10.94 16 18 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 19 H -0.26 -11.77 7.11 99.48 0.71 -11.07 16 20 C -0.24 -10.00 9.15 22.36 0.20 -9.80 16 21 C -0.06 -1.87 9.43 22.46 0.21 -1.66 16 22 C 0.08 2.27 10.60 84.97 0.90 3.17 16 23 N -0.47 -13.28 8.97 -182.99 -1.64 -14.92 16 24 O -0.39 -7.70 10.71 -126.22 -1.35 -9.05 16 25 C 0.01 0.10 8.06 72.64 0.59 0.69 16 26 C 0.01 0.10 7.95 72.64 0.58 0.68 16 27 O -0.38 -7.55 10.89 -126.22 -1.37 -8.93 16 28 H 0.07 1.55 8.05 -2.39 -0.02 1.53 16 29 H 0.07 1.58 8.06 -2.38 -0.02 1.56 16 30 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 31 H 0.15 2.56 8.06 -2.91 -0.02 2.54 16 32 H 0.17 2.64 6.32 -2.91 -0.02 2.62 16 33 H 0.16 3.24 6.27 -2.91 -0.02 3.22 16 34 H 0.14 4.41 8.06 -2.91 -0.02 4.39 16 35 H 0.29 15.39 8.31 -92.70 -0.77 14.62 16 36 H 0.11 5.34 5.62 -2.91 -0.02 5.32 16 37 H 0.14 3.97 6.23 -2.91 -0.02 3.95 16 38 H 0.17 4.09 6.22 -2.91 -0.02 4.07 16 39 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 40 H 0.13 0.62 8.14 -2.39 -0.02 0.60 16 41 H 0.14 0.58 8.14 -2.39 -0.02 0.56 16 42 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 Total: -1.00 -70.61 353.53 4.07 -66.55 By element: Atomic # 1 Polarization: 18.63 SS G_CDS: 1.06 Total: 19.69 kcal Atomic # 6 Polarization: -38.61 SS G_CDS: 5.30 Total: -33.31 kcal Atomic # 7 Polarization: -67.27 SS G_CDS: -1.34 Total: -68.61 kcal Atomic # 8 Polarization: -27.67 SS G_CDS: -2.91 Total: -30.59 kcal Atomic # 14 Polarization: 44.31 SS G_CDS: 1.96 Total: 46.27 kcal Total: -70.61 4.07 -66.55 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243591657.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.503 kcal (2) G-P(sol) polarization free energy of solvation -70.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.546 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds