Wall clock time and date at job start Tue Mar 31 2020 15:34:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52995 * 109.47124 * 2 1 4 4 H 1.09003 * 109.46950 * 54.48812 * 3 2 1 5 5 C 1.50697 * 109.47090 * 174.48730 * 3 2 1 6 6 H 1.08002 * 120.00047 * 120.00546 * 5 3 2 7 7 C 1.37875 * 120.00203 * 300.00513 * 5 3 2 8 8 N 1.31511 * 120.00116 * 180.02562 * 7 5 3 9 9 Si 1.86799 * 119.99969 * 359.97438 * 7 5 3 10 10 H 1.48501 * 109.47174 * 90.00278 * 9 7 5 11 11 H 1.48497 * 109.47283 * 210.00298 * 9 7 5 12 12 H 1.48503 * 109.47026 * 330.00350 * 9 7 5 13 13 N 1.46901 * 109.47228 * 294.48932 * 3 2 1 14 14 C 1.46898 * 110.99937 * 99.11231 * 13 3 2 15 15 C 1.50703 * 109.47262 * 85.85249 * 14 13 3 16 16 C 1.38166 * 119.97360 * 6.21819 * 15 14 13 17 17 C 1.38705 * 119.94616 * 179.78893 * 16 15 14 18 18 O 1.35897 * 120.05695 * 180.20954 * 17 16 15 19 19 C 1.42900 * 116.99972 * 180.29646 * 18 17 16 20 20 C 1.38757 * 119.88539 * 0.50207 * 17 16 15 21 21 C 1.38121 * 119.94746 * 359.73038 * 20 17 16 22 22 C 1.38245 * 119.97295 * 186.48735 * 15 14 13 23 23 S 1.76205 * 119.94288 * 359.97438 * 22 15 14 24 24 C 1.81404 * 104.44890 * 292.83481 * 23 22 15 25 25 O 1.42095 * 104.27824 * 48.90590 * 23 22 15 26 26 O 1.42099 * 104.27343 * 176.76544 * 23 22 15 27 27 H 1.08997 * 109.46761 * 185.89309 * 1 2 3 28 28 H 1.09001 * 109.46707 * 305.88602 * 1 2 3 29 29 H 1.09001 * 109.47189 * 65.89055 * 1 2 3 30 30 H 1.09009 * 109.46783 * 240.00288 * 2 1 3 31 31 H 1.09000 * 109.47199 * 120.00319 * 2 1 3 32 32 H 0.97003 * 119.99979 * 179.97438 * 8 7 5 33 33 H 1.00892 * 110.99879 * 335.15738 * 13 3 2 34 34 H 1.09000 * 109.47420 * 205.85504 * 14 13 3 35 35 H 1.09002 * 109.47338 * 325.85840 * 14 13 3 36 36 H 1.08003 * 120.02120 * 0.02562 * 16 15 14 37 37 H 1.08996 * 109.47189 * 60.00253 * 19 18 17 38 38 H 1.09004 * 109.47389 * 180.02562 * 19 18 17 39 39 H 1.09004 * 109.47338 * 299.99817 * 19 18 17 40 40 H 1.08004 * 120.02718 * 179.70051 * 20 17 16 41 41 H 1.07997 * 119.97328 * 179.97438 * 21 20 17 42 42 H 1.08998 * 109.46838 * 66.58523 * 24 23 22 43 43 H 1.08997 * 109.47011 * 186.58533 * 24 23 22 44 44 H 1.09002 * 109.47024 * 306.59339 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5984 1.9840 0.8365 5 6 3.5408 1.4446 0.1365 6 1 4.1527 1.8870 -0.6358 7 6 4.1329 0.8820 1.2473 8 7 5.4426 0.8843 1.3666 9 14 3.0747 0.1175 2.5834 10 1 2.8554 -1.3195 2.2796 11 1 3.7614 0.2473 3.8936 12 1 1.7659 0.8170 2.6391 13 7 1.6620 2.0955 -1.2604 14 6 0.4613 2.9234 -1.0849 15 6 0.8613 4.2910 -0.5942 16 6 2.1981 4.6289 -0.5059 17 6 2.5655 5.8894 -0.0584 18 8 3.8796 6.2256 0.0253 19 6 4.1843 7.5383 0.5006 20 6 1.5892 6.8042 0.3094 21 6 0.2544 6.4599 0.2238 22 6 -0.1094 5.2045 -0.2276 23 16 -1.8132 4.7681 -0.3353 24 6 -2.1254 4.5983 -2.1142 25 8 -1.8924 3.5035 0.3078 26 8 -2.4981 5.8991 0.1853 27 1 -0.3633 -1.0222 0.1055 28 1 -0.3633 0.6024 0.8326 29 1 -0.3633 0.4198 -0.9380 30 1 1.8934 -0.5138 -0.8901 31 1 1.8934 -0.5139 0.8900 32 1 5.8591 0.4888 2.1483 33 1 1.5285 1.4158 -1.9939 34 1 -0.0581 3.0170 -2.0386 35 1 -0.1997 2.4548 -0.3556 36 1 2.9562 3.9135 -0.7887 37 1 3.7857 7.6617 1.5076 38 1 5.2654 7.6767 0.5179 39 1 3.7343 8.2781 -0.1615 40 1 1.8729 7.7846 0.6627 41 1 -0.5058 7.1715 0.5104 42 1 -1.5673 3.7457 -2.5012 43 1 -3.1908 4.4419 -2.2828 44 1 -1.8053 5.5051 -2.6275 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255163006.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:34:42 Heat of formation + Delta-G solvation = -90.882914 kcal Electronic energy + Delta-G solvation = -27340.093160 eV Core-core repulsion = 23577.928656 eV Total energy + Delta-G solvation = -3762.164504 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.24778 -39.37106 -38.15036 -37.88554 -36.91707 -34.68041 -33.58103 -31.77268 -31.33492 -30.21879 -29.40880 -28.23624 -26.08217 -24.27751 -23.78039 -22.26415 -21.74482 -19.97374 -19.05192 -18.72385 -18.30728 -17.75589 -17.08640 -16.98494 -16.71024 -16.41368 -16.31592 -15.75290 -15.31371 -15.04913 -14.96420 -14.63501 -14.33111 -14.24048 -14.13273 -13.83687 -13.72160 -13.63786 -13.36757 -13.20845 -13.08056 -12.85562 -12.80669 -12.64065 -12.39250 -12.33608 -12.11036 -11.90754 -11.79143 -11.67769 -11.57710 -11.32049 -11.12737 -10.70086 -9.79167 -9.50581 -9.05112 -8.25002 -6.23528 -0.78276 -0.04586 0.36693 1.23853 1.32363 1.40118 1.95979 2.30826 2.31029 2.48172 2.98926 3.08774 3.30369 3.41240 3.73729 3.81151 4.00660 4.15435 4.20778 4.26469 4.29275 4.32371 4.34537 4.36918 4.45001 4.57149 4.59395 4.65613 4.69982 4.85068 4.98229 5.00441 5.10004 5.11103 5.12733 5.17158 5.32590 5.44698 5.50289 5.71991 5.74077 6.03628 6.42140 6.64368 6.83447 6.83906 7.39982 8.91957 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.010402 B = 0.006044 C = 0.004325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2691.158972 B = 4631.598808 C = 6473.017618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.159 4.159 3 C 0.196 3.804 4 H 0.011 0.989 5 C -0.484 4.484 6 H 0.043 0.957 7 C 0.013 3.987 8 N -0.948 5.948 9 Si 0.933 3.067 10 H -0.263 1.263 11 H -0.303 1.303 12 H -0.260 1.260 13 N -0.671 5.671 14 C 0.034 3.966 15 C 0.044 3.956 16 C -0.165 4.165 17 C 0.158 3.842 18 O -0.338 6.338 19 C 0.015 3.985 20 C -0.235 4.235 21 C 0.005 3.995 22 C -0.709 4.709 23 S 2.500 3.500 24 C -0.630 4.630 25 O -0.973 6.973 26 O -0.973 6.973 27 H 0.065 0.935 28 H 0.040 0.960 29 H 0.075 0.925 30 H 0.073 0.927 31 H 0.034 0.966 32 H 0.262 0.738 33 H 0.351 0.649 34 H 0.127 0.873 35 H 0.091 0.909 36 H 0.134 0.866 37 H 0.065 0.935 38 H 0.114 0.886 39 H 0.079 0.921 40 H 0.162 0.838 41 H 0.165 0.835 42 H 0.149 0.851 43 H 0.163 0.837 44 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.766 12.077 -8.379 21.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.198 4.198 3 C 0.086 3.914 4 H 0.029 0.971 5 C -0.523 4.523 6 H 0.061 0.939 7 C -0.184 4.184 8 N -0.589 5.589 9 Si 0.762 3.238 10 H -0.189 1.189 11 H -0.232 1.232 12 H -0.185 1.185 13 N -0.302 5.302 14 C -0.095 4.095 15 C 0.042 3.958 16 C -0.185 4.185 17 C 0.112 3.888 18 O -0.251 6.251 19 C -0.079 4.079 20 C -0.254 4.254 21 C -0.014 4.014 22 C -0.795 4.795 23 S 2.684 3.316 24 C -0.784 4.784 25 O -0.970 6.970 26 O -0.971 6.971 27 H 0.084 0.916 28 H 0.059 0.941 29 H 0.094 0.906 30 H 0.092 0.908 31 H 0.052 0.948 32 H 0.071 0.929 33 H 0.171 0.829 34 H 0.145 0.855 35 H 0.109 0.891 36 H 0.152 0.848 37 H 0.083 0.917 38 H 0.133 0.867 39 H 0.098 0.902 40 H 0.180 0.820 41 H 0.182 0.818 42 H 0.167 0.833 43 H 0.181 0.819 44 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -15.554 12.341 -7.521 21.232 hybrid contribution 0.670 -0.850 0.783 1.336 sum -14.884 11.491 -6.738 19.975 Atomic orbital electron populations 1.21915 0.94640 1.02087 1.02289 1.22530 0.96324 0.99629 1.01286 1.19467 0.93687 0.89714 0.88494 0.97076 1.21257 0.91394 1.34915 1.04684 0.93866 1.25640 0.95591 0.97041 1.00084 1.70028 1.10627 1.47986 1.30303 0.86097 0.79465 0.79813 0.78444 1.18915 1.23163 1.18457 1.60165 1.33733 1.27936 1.08364 1.21965 0.93694 0.90616 1.03255 1.19585 0.91702 0.94143 0.90387 1.20804 0.97962 0.94971 1.04717 1.19639 0.83436 0.93933 0.91829 1.86179 1.22152 1.36184 1.80584 1.23437 1.03973 0.80710 0.99810 1.21564 0.92995 1.01413 1.09444 1.20925 0.96460 0.93768 0.90205 1.30279 1.24022 1.03637 1.21547 1.04965 0.73000 0.73388 0.80242 1.30151 1.14366 1.14547 1.19357 1.93539 1.85746 1.43186 1.74552 1.93491 1.72267 1.52279 1.79036 0.91566 0.94063 0.90564 0.90822 0.94758 0.92932 0.82894 0.85531 0.89098 0.84774 0.91654 0.86729 0.90227 0.82025 0.81795 0.83258 0.81903 0.82260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.94 8.58 71.98 0.62 -4.32 16 2 C -0.16 -6.46 4.76 30.60 0.15 -6.32 16 3 C 0.20 9.01 1.19 44.17 0.05 9.07 16 4 H 0.01 0.58 6.56 -2.39 -0.02 0.56 16 5 C -0.48 -27.63 8.68 25.60 0.22 -27.40 16 6 H 0.04 2.76 7.98 -2.91 -0.02 2.73 16 7 C 0.01 0.77 5.45 84.65 0.46 1.23 16 8 N -0.95 -60.61 13.96 21.45 0.30 -60.31 16 9 Si 0.93 47.24 24.41 68.60 1.67 48.92 16 10 H -0.26 -12.50 6.82 99.48 0.68 -11.82 16 11 H -0.30 -15.49 7.11 99.48 0.71 -14.78 16 12 H -0.26 -12.80 6.53 99.48 0.65 -12.15 16 13 N -0.67 -24.87 4.64 -499.47 -2.32 -27.18 16 14 C 0.03 1.03 4.02 85.56 0.34 1.37 16 15 C 0.04 1.47 5.69 -19.88 -0.11 1.36 16 16 C -0.17 -6.56 9.03 22.36 0.20 -6.36 16 17 C 0.16 5.58 6.69 22.51 0.15 5.73 16 18 O -0.34 -11.89 10.50 -92.39 -0.97 -12.86 16 19 C 0.01 0.32 9.81 113.37 1.11 1.43 16 20 C -0.23 -6.47 9.04 22.37 0.20 -6.26 16 21 C 0.01 0.13 9.49 22.25 0.21 0.35 16 22 C -0.71 -19.91 5.59 22.28 0.12 -19.79 16 23 S 2.50 55.81 5.26 -56.49 -0.30 55.51 16 24 C -0.63 -6.08 10.56 113.37 1.20 -4.89 16 25 O -0.97 -29.12 15.44 -127.65 -1.97 -31.09 16 26 O -0.97 -25.73 16.74 -127.65 -2.14 -27.87 16 27 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 28 H 0.04 1.46 7.86 -2.39 -0.02 1.44 16 29 H 0.08 2.02 6.95 -2.39 -0.02 2.00 16 30 H 0.07 2.81 8.02 -2.38 -0.02 2.79 16 31 H 0.03 1.54 3.22 -2.39 -0.01 1.53 16 32 H 0.26 15.83 8.31 -92.71 -0.77 15.06 16 33 H 0.35 11.03 8.22 -89.70 -0.74 10.29 16 34 H 0.13 2.44 5.72 -2.39 -0.01 2.42 16 35 H 0.09 2.95 3.81 -2.39 -0.01 2.94 16 36 H 0.13 6.37 5.96 -2.91 -0.02 6.35 16 37 H 0.06 1.28 7.66 -2.39 -0.02 1.26 16 38 H 0.11 2.11 8.14 -2.38 -0.02 2.09 16 39 H 0.08 1.31 7.66 -2.38 -0.02 1.29 16 40 H 0.16 3.23 6.30 -2.91 -0.02 3.21 16 41 H 0.16 3.49 7.21 -2.91 -0.02 3.47 16 42 H 0.15 1.11 5.73 -2.39 -0.01 1.10 16 43 H 0.16 0.69 8.14 -2.39 -0.02 0.67 16 44 H 0.16 0.88 8.14 -2.39 -0.02 0.86 16 Total: -1.00 -83.95 349.71 -0.57 -84.52 By element: Atomic # 1 Polarization: 24.94 SS G_CDS: 0.22 Total: 25.16 kcal Atomic # 6 Polarization: -59.72 SS G_CDS: 4.93 Total: -54.79 kcal Atomic # 7 Polarization: -85.48 SS G_CDS: -2.02 Total: -87.50 kcal Atomic # 8 Polarization: -66.74 SS G_CDS: -5.08 Total: -71.81 kcal Atomic # 14 Polarization: 47.24 SS G_CDS: 1.67 Total: 48.92 kcal Atomic # 16 Polarization: 55.81 SS G_CDS: -0.30 Total: 55.51 kcal Total: -83.95 -0.57 -84.52 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255163006.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.363 kcal (2) G-P(sol) polarization free energy of solvation -83.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.520 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds