Wall clock time and date at job start Tue Mar 31 2020 15:35:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52995 * 109.47780 * 2 1 4 4 H 1.08998 * 109.47578 * 179.50829 * 3 2 1 5 5 C 1.50705 * 109.46802 * 299.50760 * 3 2 1 6 6 H 1.08005 * 119.99673 * 119.99733 * 5 3 2 7 7 C 1.37875 * 120.00157 * 299.99724 * 5 3 2 8 8 N 1.31516 * 119.99768 * 359.97438 * 7 5 3 9 9 Si 1.86805 * 120.00033 * 180.02562 * 7 5 3 10 10 H 1.48492 * 109.46854 * 0.02562 * 9 7 5 11 11 H 1.48497 * 109.46923 * 119.99693 * 9 7 5 12 12 H 1.48499 * 109.47059 * 239.99925 * 9 7 5 13 13 N 1.46906 * 109.46853 * 59.50218 * 3 2 1 14 14 C 1.46903 * 110.99346 * 85.91445 * 13 3 2 15 15 H 1.08995 * 109.47067 * 327.24917 * 14 13 3 16 16 C 1.52995 * 109.47328 * 87.25242 * 14 13 3 17 17 O 1.42900 * 109.47104 * 64.99639 * 16 14 13 18 18 C 1.50707 * 109.46385 * 207.24798 * 14 13 3 19 19 C 1.38246 * 120.00356 * 319.99881 * 18 14 13 20 20 C 1.38216 * 120.00241 * 179.97438 * 19 18 14 21 21 C 1.38264 * 119.99600 * 359.97438 * 20 19 18 22 22 C 1.38210 * 120.00002 * 0.02562 * 21 20 19 23 23 S 1.76198 * 119.99743 * 180.02562 * 22 21 20 24 24 C 1.81397 * 104.45438 * 89.99586 * 23 22 21 25 25 O 1.42101 * 104.27613 * 206.06798 * 23 22 21 26 26 O 1.42099 * 104.27699 * 333.92015 * 23 22 21 27 27 C 1.38215 * 119.99240 * 139.72729 * 18 14 13 28 28 H 1.09001 * 109.46562 * 56.23134 * 1 2 3 29 29 H 1.08992 * 109.46864 * 296.23130 * 1 2 3 30 30 H 1.08993 * 109.47223 * 176.22644 * 1 2 3 31 31 H 1.09000 * 109.46856 * 119.99903 * 2 1 3 32 32 H 1.09003 * 109.47233 * 239.99819 * 2 1 3 33 33 H 0.97000 * 119.99717 * 180.02562 * 8 7 5 34 34 H 1.00903 * 110.99699 * 209.86080 * 13 3 2 35 35 H 1.08997 * 109.47195 * 184.99713 * 16 14 13 36 36 H 1.08998 * 109.47207 * 304.99623 * 16 14 13 37 37 H 0.96708 * 113.99677 * 179.97438 * 17 16 14 38 38 H 1.08001 * 120.00328 * 0.02562 * 19 18 14 39 39 H 1.07996 * 120.00392 * 180.02562 * 20 19 18 40 40 H 1.08000 * 119.99562 * 180.02562 * 21 20 19 41 41 H 1.09007 * 109.46970 * 59.99672 * 24 23 22 42 42 H 1.08991 * 109.47488 * 179.97438 * 24 23 22 43 43 H 1.08998 * 109.46953 * 300.00386 * 24 23 22 44 44 H 1.07997 * 120.00794 * 359.97438 * 27 18 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0402 1.4424 0.0000 4 1 3.1301 1.4424 0.0088 5 6 1.5478 2.1493 -1.2366 6 1 0.9262 3.0277 -1.1450 7 6 1.8910 1.6746 -2.4847 8 7 2.6484 0.6053 -2.5962 9 14 1.2813 2.5513 -4.0175 10 1 0.4541 3.7198 -3.6233 11 1 2.4432 3.0153 -4.8175 12 1 0.4626 1.6160 -4.8300 13 7 1.5407 2.1384 1.1934 14 6 2.4268 1.9133 2.3433 15 1 2.8657 0.9181 2.2744 16 6 3.5400 2.9629 2.3426 17 8 2.9734 4.2583 2.5497 18 6 1.6321 2.0248 3.6190 19 6 0.6632 3.0026 3.7467 20 6 -0.0660 3.1044 4.9164 21 6 0.1734 2.2281 5.9587 22 6 1.1422 1.2506 5.8311 23 16 1.4468 0.1335 7.1592 24 6 0.3250 -1.2575 6.8471 25 8 2.7985 -0.2658 6.9782 26 8 1.0433 0.8491 8.3186 27 6 1.8684 1.1459 4.6592 28 1 -0.3632 0.5712 -0.8543 29 1 -0.3633 0.4542 0.9218 30 1 -0.3633 -1.0254 -0.0676 31 1 1.8933 -0.5138 0.8900 32 1 1.8934 -0.5139 -0.8900 33 1 2.8902 0.2715 -3.4743 34 1 1.4239 3.1245 1.0145 35 1 4.2469 2.7434 3.1426 36 1 4.0583 2.9421 1.3839 37 1 3.6231 4.9745 2.5613 38 1 0.4753 3.6863 2.9321 39 1 -0.8232 3.8680 5.0160 40 1 -0.3966 2.3075 6.8726 41 1 0.5581 -1.7022 5.8796 42 1 0.4478 -2.0060 7.6297 43 1 -0.7047 -0.9001 6.8440 44 1 2.6220 0.3790 4.5578 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255163710.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:35:23 Heat of formation + Delta-G solvation = -92.913239 kcal Electronic energy + Delta-G solvation = -26512.244245 eV Core-core repulsion = 22749.991699 eV Total energy + Delta-G solvation = -3762.252546 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.50512 -37.31727 -37.15512 -36.01152 -35.61001 -33.27481 -31.40587 -31.14513 -30.01511 -29.62741 -27.57459 -25.69355 -23.46366 -23.40704 -22.67282 -20.86345 -19.15039 -18.66934 -17.75322 -17.06748 -16.34399 -16.29893 -15.99798 -15.84153 -15.11647 -14.81929 -14.63201 -14.45143 -14.08228 -13.56828 -13.49729 -13.37963 -13.17044 -12.85878 -12.73752 -12.23650 -12.16658 -12.12393 -12.08495 -11.92268 -11.76597 -11.42663 -11.19724 -11.01341 -10.91728 -10.76754 -10.50464 -10.41403 -10.22033 -9.80329 -9.72373 -9.45434 -9.11124 -8.86120 -8.63699 -8.52738 -7.33944 -6.08271 -4.13533 -0.01965 1.04021 1.45969 2.80539 3.23912 3.32799 3.36271 3.55091 3.92843 4.02379 4.34429 4.47012 4.57789 4.69204 4.91768 4.98208 5.17428 5.19789 5.28414 5.41272 5.44189 5.50502 5.56410 5.69693 5.74843 5.94642 6.07621 6.08155 6.23825 6.47244 6.51522 6.61596 6.76338 6.80516 7.02326 7.16969 7.23040 7.42178 7.67201 7.72197 7.76347 7.80534 8.20592 8.31771 8.59101 8.95722 9.51652 10.97602 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.019867 B = 0.003249 C = 0.003091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1409.011636 B = 8615.678601 C = 9057.076009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.104 4.104 3 C 0.216 3.784 4 H 0.001 0.999 5 C -0.511 4.511 6 H 0.059 0.941 7 C 0.064 3.936 8 N -0.888 5.888 9 Si 0.893 3.107 10 H -0.273 1.273 11 H -0.286 1.286 12 H -0.284 1.284 13 N -0.674 5.674 14 C 0.123 3.877 15 H 0.093 0.907 16 C 0.051 3.949 17 O -0.566 6.566 18 C -0.066 4.066 19 C -0.014 4.014 20 C -0.149 4.149 21 C -0.036 4.036 22 C -0.664 4.664 23 S 2.502 3.498 24 C -0.651 4.651 25 O -0.942 6.942 26 O -0.945 6.945 27 C -0.029 4.029 28 H 0.056 0.944 29 H 0.041 0.959 30 H 0.013 0.987 31 H 0.009 0.991 32 H 0.087 0.913 33 H 0.260 0.740 34 H 0.342 0.658 35 H 0.040 0.960 36 H 0.056 0.944 37 H 0.374 0.626 38 H 0.134 0.866 39 H 0.126 0.874 40 H 0.133 0.867 41 H 0.133 0.867 42 H 0.128 0.872 43 H 0.131 0.869 44 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.998 0.120 16.144 16.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.142 4.142 3 C 0.108 3.892 4 H 0.019 0.981 5 C -0.549 4.549 6 H 0.077 0.923 7 C -0.138 4.138 8 N -0.527 5.527 9 Si 0.721 3.279 10 H -0.198 1.198 11 H -0.212 1.212 12 H -0.210 1.210 13 N -0.305 5.305 14 C 0.012 3.988 15 H 0.111 0.889 16 C -0.029 4.029 17 O -0.370 6.370 18 C -0.068 4.068 19 C -0.033 4.033 20 C -0.168 4.168 21 C -0.055 4.055 22 C -0.752 4.752 23 S 2.683 3.317 24 C -0.801 4.801 25 O -0.939 6.939 26 O -0.943 6.943 27 C -0.048 4.048 28 H 0.075 0.925 29 H 0.061 0.939 30 H 0.032 0.968 31 H 0.027 0.973 32 H 0.106 0.894 33 H 0.070 0.930 34 H 0.161 0.839 35 H 0.058 0.942 36 H 0.075 0.925 37 H 0.220 0.780 38 H 0.152 0.848 39 H 0.144 0.856 40 H 0.151 0.849 41 H 0.152 0.848 42 H 0.147 0.853 43 H 0.150 0.850 44 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -3.327 -0.758 16.839 17.181 hybrid contribution 0.478 1.213 -1.977 2.368 sum -2.849 0.454 14.863 15.140 Atomic orbital electron populations 1.21439 0.97502 0.97373 1.01356 1.21463 0.95080 0.98259 0.99442 1.19172 0.92912 0.91408 0.85680 0.98130 1.21188 1.31607 1.11919 0.90217 0.92256 1.24874 0.95025 0.94982 0.98932 1.69886 1.36544 1.22681 1.23604 0.86528 0.78556 0.79709 0.83143 1.19774 1.21184 1.21017 1.60748 1.47476 1.16926 1.05347 1.20622 0.90583 0.97415 0.90175 0.88884 1.22913 0.96140 0.84176 0.99651 1.86436 1.38251 1.16378 1.95974 1.19978 0.96886 0.95000 0.94954 1.21319 0.90989 0.94783 0.96190 1.21277 1.01200 1.00261 0.94033 1.20782 0.93881 0.92532 0.98303 1.30185 1.10369 1.17762 1.16887 1.04945 0.75810 0.76314 0.74614 1.30226 1.17644 1.19667 1.12515 1.93577 1.30883 1.83377 1.86051 1.93560 1.84027 1.70456 1.46212 1.20771 0.95782 0.97486 0.90769 0.92539 0.93946 0.96837 0.97257 0.89432 0.92990 0.83906 0.94152 0.92550 0.77983 0.84784 0.85608 0.84894 0.84796 0.85345 0.85044 0.84746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.57 9.52 37.16 0.35 -2.22 16 2 C -0.10 -2.39 5.57 -26.73 -0.15 -2.54 16 3 C 0.22 4.98 2.09 -68.86 -0.14 4.84 16 4 H 0.00 0.03 7.27 -51.93 -0.38 -0.35 16 5 C -0.51 -13.03 7.29 -34.44 -0.25 -13.28 16 6 H 0.06 1.52 7.60 -52.48 -0.40 1.13 16 7 C 0.06 1.67 5.30 -17.82 -0.09 1.58 16 8 N -0.89 -24.18 11.32 55.43 0.63 -23.55 16 9 Si 0.89 20.54 29.54 -169.99 -5.02 15.52 16 10 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 11 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 12 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 13 N -0.67 -13.03 4.76 -102.17 -0.49 -13.52 16 14 C 0.12 2.06 2.45 -68.86 -0.17 1.89 16 15 H 0.09 1.59 7.04 -51.93 -0.37 1.23 16 16 C 0.05 0.76 6.68 37.16 0.25 1.01 16 17 O -0.57 -7.86 11.45 -35.23 -0.40 -8.26 16 18 C -0.07 -1.02 4.83 -104.62 -0.51 -1.52 16 19 C -0.01 -0.21 8.32 -39.59 -0.33 -0.54 16 20 C -0.15 -1.87 10.05 -39.58 -0.40 -2.27 16 21 C -0.04 -0.43 9.47 -39.58 -0.37 -0.81 16 22 C -0.66 -8.20 5.66 -39.58 -0.22 -8.42 16 23 S 2.50 25.88 5.80 -107.50 -0.62 25.26 16 24 C -0.65 -4.17 10.80 101.05 1.09 -3.08 16 25 O -0.94 -12.80 17.13 -57.54 -0.99 -13.78 16 26 O -0.95 -12.18 17.13 -57.54 -0.99 -13.16 16 27 C -0.03 -0.40 9.09 -39.58 -0.36 -0.76 16 28 H 0.06 1.31 7.10 -51.93 -0.37 0.95 16 29 H 0.04 0.87 7.71 -51.93 -0.40 0.47 16 30 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 16 31 H 0.01 0.19 7.53 -51.93 -0.39 -0.20 16 32 H 0.09 2.26 6.06 -51.93 -0.31 1.95 16 33 H 0.26 6.80 8.31 -40.82 -0.34 6.47 16 34 H 0.34 6.76 6.84 -39.29 -0.27 6.49 16 35 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.06 0.92 7.57 -51.93 -0.39 0.53 16 37 H 0.37 3.62 9.12 45.56 0.42 4.03 16 38 H 0.13 2.01 7.08 -52.49 -0.37 1.64 16 39 H 0.13 1.27 8.06 -52.49 -0.42 0.85 16 40 H 0.13 1.30 7.57 -52.49 -0.40 0.90 16 41 H 0.13 0.78 8.14 -51.92 -0.42 0.36 16 42 H 0.13 0.59 8.14 -51.93 -0.42 0.17 16 43 H 0.13 0.66 8.14 -51.92 -0.42 0.23 16 44 H 0.13 1.72 7.56 -52.49 -0.40 1.32 16 LS Contribution 368.70 15.07 5.56 5.56 Total: -1.00 -32.81 368.70 -9.33 -42.14 By element: Atomic # 1 Polarization: 15.62 SS G_CDS: -5.70 Total: 9.92 kcal Atomic # 6 Polarization: -24.82 SS G_CDS: -1.31 Total: -26.12 kcal Atomic # 7 Polarization: -37.21 SS G_CDS: 0.14 Total: -37.07 kcal Atomic # 8 Polarization: -32.83 SS G_CDS: -2.37 Total: -35.20 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.02 Total: 15.52 kcal Atomic # 16 Polarization: 25.88 SS G_CDS: -0.62 Total: 25.26 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -32.81 -9.33 -42.14 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255163710.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.777 kcal (2) G-P(sol) polarization free energy of solvation -32.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.136 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds