Wall clock time and date at job start Tue Mar 31 2020 15:35:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52995 * 109.47780 * 2 1 4 4 H 1.08998 * 109.47578 * 179.50829 * 3 2 1 5 5 C 1.50705 * 109.46802 * 299.50760 * 3 2 1 6 6 H 1.08005 * 119.99673 * 119.99733 * 5 3 2 7 7 C 1.37875 * 120.00157 * 299.99724 * 5 3 2 8 8 N 1.31516 * 119.99768 * 359.97438 * 7 5 3 9 9 Si 1.86805 * 120.00033 * 180.02562 * 7 5 3 10 10 H 1.48492 * 109.46854 * 0.02562 * 9 7 5 11 11 H 1.48497 * 109.46923 * 119.99693 * 9 7 5 12 12 H 1.48499 * 109.47059 * 239.99925 * 9 7 5 13 13 N 1.46906 * 109.46853 * 59.50218 * 3 2 1 14 14 C 1.46903 * 110.99346 * 85.91445 * 13 3 2 15 15 H 1.08995 * 109.47067 * 327.24917 * 14 13 3 16 16 C 1.52995 * 109.47328 * 87.25242 * 14 13 3 17 17 O 1.42900 * 109.47104 * 64.99639 * 16 14 13 18 18 C 1.50707 * 109.46385 * 207.24798 * 14 13 3 19 19 C 1.38246 * 120.00356 * 319.99881 * 18 14 13 20 20 C 1.38216 * 120.00241 * 179.97438 * 19 18 14 21 21 C 1.38264 * 119.99600 * 359.97438 * 20 19 18 22 22 C 1.38210 * 120.00002 * 0.02562 * 21 20 19 23 23 S 1.76198 * 119.99743 * 180.02562 * 22 21 20 24 24 C 1.81397 * 104.45438 * 89.99586 * 23 22 21 25 25 O 1.42101 * 104.27613 * 206.06798 * 23 22 21 26 26 O 1.42099 * 104.27699 * 333.92015 * 23 22 21 27 27 C 1.38215 * 119.99240 * 139.72729 * 18 14 13 28 28 H 1.09001 * 109.46562 * 56.23134 * 1 2 3 29 29 H 1.08992 * 109.46864 * 296.23130 * 1 2 3 30 30 H 1.08993 * 109.47223 * 176.22644 * 1 2 3 31 31 H 1.09000 * 109.46856 * 119.99903 * 2 1 3 32 32 H 1.09003 * 109.47233 * 239.99819 * 2 1 3 33 33 H 0.97000 * 119.99717 * 180.02562 * 8 7 5 34 34 H 1.00903 * 110.99699 * 209.86080 * 13 3 2 35 35 H 1.08997 * 109.47195 * 184.99713 * 16 14 13 36 36 H 1.08998 * 109.47207 * 304.99623 * 16 14 13 37 37 H 0.96708 * 113.99677 * 179.97438 * 17 16 14 38 38 H 1.08001 * 120.00328 * 0.02562 * 19 18 14 39 39 H 1.07996 * 120.00392 * 180.02562 * 20 19 18 40 40 H 1.08000 * 119.99562 * 180.02562 * 21 20 19 41 41 H 1.09007 * 109.46970 * 59.99672 * 24 23 22 42 42 H 1.08991 * 109.47488 * 179.97438 * 24 23 22 43 43 H 1.08998 * 109.46953 * 300.00386 * 24 23 22 44 44 H 1.07997 * 120.00794 * 359.97438 * 27 18 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0402 1.4424 0.0000 4 1 3.1301 1.4424 0.0088 5 6 1.5478 2.1493 -1.2366 6 1 0.9262 3.0277 -1.1450 7 6 1.8910 1.6746 -2.4847 8 7 2.6484 0.6053 -2.5962 9 14 1.2813 2.5513 -4.0175 10 1 0.4541 3.7198 -3.6233 11 1 2.4432 3.0153 -4.8175 12 1 0.4626 1.6160 -4.8300 13 7 1.5407 2.1384 1.1934 14 6 2.4268 1.9133 2.3433 15 1 2.8657 0.9181 2.2744 16 6 3.5400 2.9629 2.3426 17 8 2.9734 4.2583 2.5497 18 6 1.6321 2.0248 3.6190 19 6 0.6632 3.0026 3.7467 20 6 -0.0660 3.1044 4.9164 21 6 0.1734 2.2281 5.9587 22 6 1.1422 1.2506 5.8311 23 16 1.4468 0.1335 7.1592 24 6 0.3250 -1.2575 6.8471 25 8 2.7985 -0.2658 6.9782 26 8 1.0433 0.8491 8.3186 27 6 1.8684 1.1459 4.6592 28 1 -0.3632 0.5712 -0.8543 29 1 -0.3633 0.4542 0.9218 30 1 -0.3633 -1.0254 -0.0676 31 1 1.8933 -0.5138 0.8900 32 1 1.8934 -0.5139 -0.8900 33 1 2.8902 0.2715 -3.4743 34 1 1.4239 3.1245 1.0145 35 1 4.2469 2.7434 3.1426 36 1 4.0583 2.9421 1.3839 37 1 3.6231 4.9745 2.5613 38 1 0.4753 3.6863 2.9321 39 1 -0.8232 3.8680 5.0160 40 1 -0.3966 2.3075 6.8726 41 1 0.5581 -1.7022 5.8796 42 1 0.4478 -2.0060 7.6297 43 1 -0.7047 -0.9001 6.8440 44 1 2.6220 0.3790 4.5578 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255163710.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:35:22 Heat of formation + Delta-G solvation = -117.991375 kcal Electronic energy + Delta-G solvation = -26513.331714 eV Core-core repulsion = 22749.991699 eV Total energy + Delta-G solvation = -3763.340015 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.62816 -38.60344 -38.07874 -37.11449 -36.92610 -34.81598 -33.14819 -32.14006 -31.42434 -30.20703 -29.02502 -27.44438 -25.20937 -24.51015 -23.85008 -22.10235 -20.77596 -19.66178 -18.96349 -18.18042 -18.04459 -17.12206 -16.97921 -16.86468 -16.71645 -16.22570 -15.91620 -15.75842 -15.33149 -14.88131 -14.80725 -14.29873 -14.08580 -13.97343 -13.90155 -13.69590 -13.64267 -13.21568 -13.11472 -13.09361 -12.90621 -12.87537 -12.78100 -12.51833 -12.40653 -12.07378 -11.99308 -11.95332 -11.60369 -11.42335 -11.28856 -10.95069 -10.76201 -10.52551 -10.12089 -9.72112 -8.95948 -8.08932 -6.19829 -0.78659 0.02871 0.42222 1.39984 1.43801 1.53395 1.98735 2.42621 2.58647 3.09121 3.20012 3.21701 3.33972 3.71592 3.86352 3.97236 4.14574 4.16388 4.18739 4.24952 4.40305 4.43564 4.51695 4.63390 4.68029 4.73540 4.81010 4.95459 4.99462 5.00427 5.05321 5.17583 5.32911 5.40942 5.47216 5.57668 5.68201 5.74152 5.84120 5.92279 6.00095 6.30785 6.53040 6.77875 6.87693 7.05607 7.48826 8.96034 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.019867 B = 0.003249 C = 0.003091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1409.011636 B = 8615.678601 C = 9057.076009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.100 4.100 3 C 0.224 3.776 4 H -0.030 1.030 5 C -0.518 4.518 6 H 0.054 0.946 7 C 0.019 3.981 8 N -0.915 5.915 9 Si 0.950 3.050 10 H -0.268 1.268 11 H -0.284 1.284 12 H -0.283 1.283 13 N -0.665 5.665 14 C 0.121 3.879 15 H 0.083 0.917 16 C 0.060 3.940 17 O -0.572 6.572 18 C -0.082 4.082 19 C -0.031 4.031 20 C -0.148 4.148 21 C -0.037 4.037 22 C -0.665 4.665 23 S 2.513 3.487 24 C -0.628 4.628 25 O -0.980 6.980 26 O -0.973 6.973 27 C -0.042 4.042 28 H 0.034 0.966 29 H 0.051 0.949 30 H 0.031 0.969 31 H 0.021 0.979 32 H 0.058 0.942 33 H 0.260 0.740 34 H 0.338 0.662 35 H 0.057 0.943 36 H 0.036 0.964 37 H 0.393 0.607 38 H 0.124 0.876 39 H 0.151 0.849 40 H 0.159 0.841 41 H 0.145 0.855 42 H 0.155 0.845 43 H 0.155 0.845 44 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.738 -0.095 17.705 18.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.139 4.139 3 C 0.116 3.884 4 H -0.013 1.013 5 C -0.556 4.556 6 H 0.072 0.928 7 C -0.180 4.180 8 N -0.555 5.555 9 Si 0.777 3.223 10 H -0.193 1.193 11 H -0.211 1.211 12 H -0.209 1.209 13 N -0.296 5.296 14 C 0.010 3.990 15 H 0.101 0.899 16 C -0.020 4.020 17 O -0.380 6.380 18 C -0.083 4.083 19 C -0.049 4.049 20 C -0.166 4.166 21 C -0.056 4.056 22 C -0.751 4.751 23 S 2.696 3.304 24 C -0.781 4.781 25 O -0.978 6.978 26 O -0.970 6.970 27 C -0.061 4.061 28 H 0.053 0.947 29 H 0.070 0.930 30 H 0.050 0.950 31 H 0.040 0.960 32 H 0.076 0.924 33 H 0.069 0.931 34 H 0.157 0.843 35 H 0.075 0.925 36 H 0.055 0.945 37 H 0.242 0.758 38 H 0.142 0.858 39 H 0.169 0.831 40 H 0.176 0.824 41 H 0.164 0.836 42 H 0.173 0.827 43 H 0.173 0.827 44 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -5.038 -0.907 18.407 19.106 hybrid contribution 0.997 1.249 -2.351 2.843 sum -4.041 0.342 16.056 16.560 Atomic orbital electron populations 1.21291 0.96108 0.98212 1.00758 1.21343 0.96197 0.97815 0.98538 1.18925 0.90969 0.91915 0.86631 1.01250 1.21435 1.31131 1.11745 0.91328 0.92769 1.25550 0.95301 0.95622 1.01520 1.70012 1.37591 1.23836 1.24015 0.85629 0.77993 0.78761 0.79968 1.19264 1.21057 1.20929 1.60653 1.48046 1.16280 1.04596 1.20615 0.90973 0.97448 0.89939 0.89941 1.22685 0.95606 0.84537 0.99176 1.86397 1.39261 1.16474 1.95845 1.19833 0.97651 0.96304 0.94552 1.21310 0.91720 0.94877 0.96989 1.21566 1.01111 1.00730 0.93237 1.21157 0.93661 0.91766 0.98978 1.30503 1.09603 1.18384 1.16572 1.04627 0.75658 0.76781 0.73332 1.30048 1.16855 1.17091 1.14141 1.93529 1.34183 1.83858 1.86214 1.93521 1.84350 1.72091 1.47057 1.20868 0.96472 0.97566 0.91233 0.94692 0.93013 0.95027 0.96044 0.92362 0.93107 0.84308 0.92492 0.94544 0.75819 0.85809 0.83127 0.82383 0.83622 0.82702 0.82711 0.84386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.53 9.52 71.98 0.69 -3.84 16 2 C -0.10 -4.67 5.57 30.59 0.17 -4.50 16 3 C 0.22 10.65 2.09 44.17 0.09 10.74 16 4 H -0.03 -1.59 7.27 -2.39 -0.02 -1.61 16 5 C -0.52 -26.92 7.29 25.60 0.19 -26.73 16 6 H 0.05 2.82 7.60 -2.91 -0.02 2.80 16 7 C 0.02 1.02 5.30 84.65 0.45 1.47 16 8 N -0.91 -50.92 11.32 21.45 0.24 -50.68 16 9 Si 0.95 42.51 29.54 68.60 2.03 44.54 16 10 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 11 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16 12 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 13 N -0.67 -26.21 4.76 -477.14 -2.27 -28.48 16 14 C 0.12 4.11 2.45 44.17 0.11 4.22 16 15 H 0.08 2.92 7.04 -2.39 -0.02 2.91 16 16 C 0.06 1.82 6.68 71.98 0.48 2.30 16 17 O -0.57 -15.83 11.45 -148.98 -1.71 -17.53 16 18 C -0.08 -2.48 4.83 -19.87 -0.10 -2.58 16 19 C -0.03 -0.87 8.32 22.27 0.19 -0.68 16 20 C -0.15 -3.42 10.05 22.27 0.22 -3.19 16 21 C -0.04 -0.79 9.47 22.27 0.21 -0.58 16 22 C -0.66 -15.25 5.66 22.27 0.13 -15.12 16 23 S 2.51 47.02 5.80 -56.49 -0.33 46.69 16 24 C -0.63 -5.47 10.80 113.37 1.22 -4.24 16 25 O -0.98 -25.84 17.13 -127.65 -2.19 -28.03 16 26 O -0.97 -23.19 17.13 -127.65 -2.19 -25.38 16 27 C -0.04 -1.14 9.09 22.27 0.20 -0.94 16 28 H 0.03 1.61 7.10 -2.39 -0.02 1.59 16 29 H 0.05 2.07 7.71 -2.39 -0.02 2.06 16 30 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 31 H 0.02 0.91 7.53 -2.39 -0.02 0.89 16 32 H 0.06 3.08 6.06 -2.39 -0.01 3.07 16 33 H 0.26 13.85 8.31 -92.71 -0.77 13.08 16 34 H 0.34 13.66 6.84 -89.69 -0.61 13.05 16 35 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 36 H 0.04 1.24 7.57 -2.39 -0.02 1.23 16 37 H 0.39 7.36 9.12 -74.05 -0.68 6.68 16 38 H 0.12 3.70 7.08 -2.91 -0.02 3.68 16 39 H 0.15 2.63 8.06 -2.91 -0.02 2.61 16 40 H 0.16 2.56 7.57 -2.91 -0.02 2.54 16 41 H 0.15 1.11 8.14 -2.39 -0.02 1.09 16 42 H 0.15 0.68 8.14 -2.40 -0.02 0.66 16 43 H 0.15 0.77 8.14 -2.39 -0.02 0.75 16 44 H 0.14 3.51 7.56 -2.91 -0.02 3.49 16 Total: -1.00 -71.62 368.70 -2.43 -74.04 By element: Atomic # 1 Polarization: 28.77 SS G_CDS: -0.27 Total: 28.51 kcal Atomic # 6 Polarization: -47.94 SS G_CDS: 4.25 Total: -43.69 kcal Atomic # 7 Polarization: -77.13 SS G_CDS: -2.03 Total: -79.15 kcal Atomic # 8 Polarization: -64.86 SS G_CDS: -6.08 Total: -70.94 kcal Atomic # 14 Polarization: 42.51 SS G_CDS: 2.03 Total: 44.54 kcal Atomic # 16 Polarization: 47.02 SS G_CDS: -0.33 Total: 46.69 kcal Total: -71.62 -2.43 -74.04 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255163710.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.947 kcal (2) G-P(sol) polarization free energy of solvation -71.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.044 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds