Wall clock time and date at job start Tue Mar 31 2020 15:49:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.46603 * 2 1 4 4 N 1.46504 * 109.47094 * 179.97438 * 3 2 1 5 5 C 1.46506 * 119.99738 * 84.99608 * 4 3 2 6 6 C 1.50699 * 109.46928 * 85.00452 * 5 4 3 7 7 H 1.08003 * 119.99963 * 0.02562 * 6 5 4 8 8 C 1.37873 * 119.99865 * 179.97438 * 6 5 4 9 9 N 1.31514 * 120.00518 * 0.02562 * 8 6 5 10 10 Si 1.86803 * 119.99987 * 179.97438 * 8 6 5 11 11 H 1.48501 * 109.46948 * 0.02562 * 10 8 6 12 12 H 1.48501 * 109.47174 * 120.00320 * 10 8 6 13 13 H 1.48497 * 109.47378 * 240.00235 * 10 8 6 14 14 S 1.65593 * 120.00121 * 265.00144 * 4 3 2 15 15 O 1.42098 * 106.40615 * 23.53545 * 14 4 3 16 16 O 1.42104 * 106.40292 * 156.45650 * 14 4 3 17 17 C 1.76204 * 107.21858 * 269.99723 * 14 4 3 18 18 C 1.38160 * 120.02720 * 114.72199 * 17 14 4 19 19 C 1.38253 * 120.05220 * 179.74628 * 18 17 14 20 20 C 1.38282 * 120.11198 * 0.55308 * 19 18 17 21 21 C 1.50698 * 119.97343 * 179.72247 * 20 19 18 22 22 C 1.38128 * 120.05634 * 359.70145 * 20 19 18 23 23 C 1.38711 * 120.02758 * 294.99997 * 17 14 4 24 24 O 1.35906 * 120.05254 * 359.95252 * 23 17 14 25 25 C 1.42907 * 116.99616 * 180.02562 * 24 23 17 26 26 H 1.09000 * 109.47165 * 60.00267 * 1 2 3 27 27 H 1.09000 * 109.46949 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.47399 * 300.00017 * 1 2 3 29 29 H 1.08995 * 109.47399 * 239.99983 * 2 1 3 30 30 H 1.09000 * 109.47165 * 119.99733 * 2 1 3 31 31 H 1.08999 * 109.47686 * 59.99662 * 3 2 1 32 32 H 1.09000 * 109.47142 * 299.99747 * 3 2 1 33 33 H 1.09004 * 109.47073 * 205.00280 * 5 4 3 34 34 H 1.09000 * 109.47212 * 325.00363 * 5 4 3 35 35 H 0.96992 * 120.00316 * 179.97438 * 9 8 6 36 36 H 1.08002 * 119.97662 * 0.02562 * 18 17 14 37 37 H 1.07997 * 119.94085 * 180.25624 * 19 18 17 38 38 H 1.09008 * 109.47114 * 269.98237 * 21 20 19 39 39 H 1.09000 * 109.46789 * 29.97511 * 21 20 19 40 40 H 1.08995 * 109.47357 * 149.97871 * 21 20 19 41 41 H 1.07994 * 120.02513 * 180.02562 * 22 20 19 42 42 H 1.08997 * 109.46828 * 180.02562 * 25 24 23 43 43 H 1.08999 * 109.46889 * 300.00160 * 25 24 23 44 44 H 1.08997 * 109.47097 * 59.99988 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5049 1.4426 0.0006 5 6 4.2380 1.3318 -1.2630 6 6 4.3821 2.6985 -1.8816 7 1 3.9693 3.5631 -1.3831 8 6 5.0417 2.8451 -3.0834 9 7 5.5448 1.7923 -3.6902 10 14 5.2198 4.5390 -3.8505 11 1 4.5710 5.5490 -2.9762 12 1 6.6606 4.8661 -3.9992 13 1 4.5697 4.5486 -5.1856 14 16 4.3323 1.5679 1.4295 15 8 3.4503 1.1104 2.4454 16 8 5.6154 1.0013 1.2013 17 6 4.5929 3.2840 1.7327 18 6 3.9927 3.8933 2.8177 19 6 4.2011 5.2386 3.0591 20 6 5.0010 5.9801 2.2092 21 6 5.2210 7.4477 2.4717 22 6 5.5991 5.3767 1.1201 23 6 5.3962 4.0255 0.8789 24 8 5.9839 3.4294 -0.1917 25 6 6.7982 4.2543 -1.0275 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 1.8934 -0.5138 -0.8899 30 1 1.8934 -0.5138 0.8900 31 1 1.6765 1.9564 0.8899 32 1 1.6766 1.9563 -0.8900 33 1 5.2262 0.9124 -1.0742 34 1 3.6909 0.6804 -1.9445 35 1 6.0085 1.8955 -4.5358 36 1 3.3639 3.3173 3.4805 37 1 3.7343 5.7121 3.9101 38 1 4.4532 8.0275 1.9592 39 1 5.1645 7.6375 3.5435 40 1 6.2040 7.7396 2.1022 41 1 6.2241 5.9563 0.4569 42 1 7.2052 3.6560 -1.8426 43 1 6.1945 5.0639 -1.4378 44 1 7.6154 4.6724 -0.4399 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001259200887.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:49:31 Heat of formation + Delta-G solvation = -84.206614 kcal Electronic energy + Delta-G solvation = -28142.824717 eV Core-core repulsion = 24380.949719 eV Total energy + Delta-G solvation = -3761.874998 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -39.82323 -37.33530 -36.49686 -36.12719 -35.04129 -33.13460 -32.70569 -31.75731 -29.83761 -27.71157 -27.35256 -26.43225 -24.94043 -22.57703 -21.99047 -21.56085 -20.89732 -18.55103 -17.49810 -16.86831 -16.59894 -16.16165 -16.04797 -15.44555 -15.01981 -14.41576 -14.27868 -14.18043 -14.10978 -13.64933 -13.58621 -13.49657 -13.21369 -12.52713 -12.33204 -12.24797 -12.02433 -11.97198 -11.63567 -11.56903 -11.38831 -11.25508 -11.23785 -11.12464 -11.00700 -10.88705 -10.84414 -10.48875 -10.31252 -10.23938 -10.13948 -9.85732 -9.63724 -8.88685 -8.48284 -7.99140 -7.88100 -6.10070 -4.05878 1.07628 1.35546 1.71820 3.08538 3.21610 3.24246 3.61134 3.79103 3.92716 4.28958 4.47699 4.81651 4.88440 5.10007 5.23550 5.28855 5.38955 5.43424 5.46939 5.50197 5.53971 5.63917 5.71046 5.72186 5.75882 5.79067 5.85334 6.09430 6.19608 6.21932 6.23505 6.28218 6.35826 6.40613 6.45150 6.64285 6.76576 6.79879 7.01005 7.41945 7.52260 7.74862 7.80605 7.88586 8.21363 8.89982 9.48314 10.98583 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.008830 B = 0.008398 C = 0.005223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3170.339913 B = 3333.198109 C = 5359.695934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.145 4.145 3 C 0.134 3.866 4 N -0.981 5.981 5 C 0.247 3.753 6 C -0.497 4.497 7 H 0.059 0.941 8 C 0.061 3.939 9 N -0.888 5.888 10 Si 0.870 3.130 11 H -0.273 1.273 12 H -0.281 1.281 13 H -0.286 1.286 14 S 2.698 3.302 15 O -0.985 6.985 16 O -0.953 6.953 17 C -0.720 4.720 18 C 0.014 3.986 19 C -0.198 4.198 20 C -0.002 4.002 21 C -0.120 4.120 22 C -0.242 4.242 23 C 0.245 3.755 24 O -0.244 6.244 25 C 0.034 3.966 26 H 0.054 0.946 27 H 0.051 0.949 28 H 0.052 0.948 29 H 0.068 0.932 30 H 0.063 0.937 31 H 0.064 0.936 32 H 0.079 0.921 33 H 0.057 0.943 34 H 0.039 0.961 35 H 0.262 0.738 36 H 0.141 0.859 37 H 0.124 0.876 38 H 0.075 0.925 39 H 0.069 0.931 40 H 0.068 0.932 41 H 0.130 0.870 42 H 0.109 0.891 43 H 0.049 0.951 44 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.305 6.914 8.808 11.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.184 4.184 3 C 0.007 3.993 4 N -0.819 5.819 5 C 0.125 3.875 6 C -0.537 4.537 7 H 0.077 0.923 8 C -0.140 4.140 9 N -0.528 5.528 10 Si 0.698 3.302 11 H -0.198 1.198 12 H -0.207 1.207 13 H -0.213 1.213 14 S 2.787 3.213 15 O -0.975 6.975 16 O -0.943 6.943 17 C -0.806 4.806 18 C -0.006 4.006 19 C -0.217 4.217 20 C -0.002 4.002 21 C -0.176 4.176 22 C -0.262 4.262 23 C 0.194 3.806 24 O -0.152 6.152 25 C -0.061 4.061 26 H 0.073 0.927 27 H 0.070 0.930 28 H 0.071 0.929 29 H 0.087 0.913 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.098 0.902 33 H 0.075 0.925 34 H 0.057 0.943 35 H 0.072 0.928 36 H 0.159 0.841 37 H 0.142 0.858 38 H 0.094 0.906 39 H 0.088 0.912 40 H 0.087 0.913 41 H 0.148 0.852 42 H 0.128 0.872 43 H 0.067 0.933 44 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -2.897 5.985 9.054 11.234 hybrid contribution 0.171 2.204 -0.929 2.398 sum -2.726 8.189 8.125 11.854 Atomic orbital electron populations 1.21680 0.95903 1.01267 1.01569 1.21981 0.95431 0.98297 1.02707 1.21088 0.79798 0.96108 1.02272 1.57372 1.13598 1.87332 1.23634 1.19229 0.92389 0.97257 0.78648 1.21495 1.33853 0.93762 1.04565 0.92324 1.24847 0.96343 0.95865 0.96993 1.69922 1.37554 1.28259 1.17066 0.87061 0.77881 0.85500 0.79723 1.19782 1.20721 1.21267 1.01637 0.73417 0.73731 0.72475 1.93479 1.66666 1.79661 1.57715 1.93551 1.40228 1.75491 1.85034 1.30334 1.15111 1.28426 1.06702 1.20719 0.92606 0.94600 0.92645 1.20854 1.04313 0.94431 1.02113 1.19888 0.92288 0.95549 0.92489 1.20897 1.02490 0.91854 1.02387 1.21176 1.08433 0.94579 1.01995 1.18583 0.86819 0.90627 0.84531 1.86808 1.58885 1.36550 1.32951 1.23074 0.92565 0.96050 0.94367 0.92728 0.93013 0.92881 0.91290 0.91775 0.91805 0.90227 0.92548 0.94339 0.92796 0.84132 0.85800 0.90629 0.91176 0.91343 0.85222 0.87232 0.93267 0.93678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.89 9.91 37.16 0.37 -1.53 16 2 C -0.14 -2.34 6.26 -26.73 -0.17 -2.51 16 3 C 0.13 2.39 5.34 -4.04 -0.02 2.37 16 4 N -0.98 -20.66 2.77 -115.66 -0.32 -20.98 16 5 C 0.25 6.00 4.98 -5.19 -0.03 5.97 16 6 C -0.50 -12.38 5.74 -34.44 -0.20 -12.58 16 7 H 0.06 1.46 7.04 -52.48 -0.37 1.09 16 8 C 0.06 1.55 4.32 -17.82 -0.08 1.47 16 9 N -0.89 -24.09 13.29 55.43 0.74 -23.35 16 10 Si 0.87 19.45 25.36 -169.99 -4.31 15.14 16 11 H -0.27 -5.98 7.10 56.52 0.40 -5.58 16 12 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 13 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 14 S 2.70 57.14 5.23 -107.50 -0.56 56.58 16 15 O -0.98 -20.48 15.94 -57.17 -0.91 -21.39 16 16 O -0.95 -23.14 15.85 -62.49 -0.99 -24.13 16 17 C -0.72 -14.05 5.92 -39.44 -0.23 -14.28 16 18 C 0.01 0.22 9.55 -39.60 -0.38 -0.15 16 19 C -0.20 -2.85 9.70 -39.56 -0.38 -3.23 16 20 C 0.00 -0.03 5.88 -104.65 -0.62 -0.64 16 21 C -0.12 -1.23 10.01 36.00 0.36 -0.87 16 22 C -0.24 -4.07 8.69 -39.43 -0.34 -4.41 16 23 C 0.25 4.87 6.16 -39.22 -0.24 4.63 16 24 O -0.24 -5.28 5.34 -29.17 -0.16 -5.44 16 25 C 0.03 0.64 7.22 101.05 0.73 1.37 16 26 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 30 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 31 H 0.06 1.04 7.61 -51.93 -0.40 0.65 16 32 H 0.08 1.41 8.11 -51.93 -0.42 0.99 16 33 H 0.06 1.52 6.91 -51.93 -0.36 1.16 16 34 H 0.04 0.97 8.11 -51.93 -0.42 0.55 16 35 H 0.26 6.77 8.31 -40.82 -0.34 6.43 16 36 H 0.14 2.07 7.33 -52.49 -0.38 1.69 16 37 H 0.12 1.38 8.06 -52.49 -0.42 0.96 16 38 H 0.08 0.71 8.14 -51.92 -0.42 0.29 16 39 H 0.07 0.60 8.08 -51.93 -0.42 0.18 16 40 H 0.07 0.64 8.08 -51.93 -0.42 0.22 16 41 H 0.13 1.93 6.30 -52.49 -0.33 1.60 16 42 H 0.11 2.19 6.81 -51.93 -0.35 1.83 16 43 H 0.05 0.90 5.38 -51.93 -0.28 0.62 16 44 H 0.04 0.69 7.66 -51.93 -0.40 0.29 16 LS Contribution 357.42 15.07 5.39 5.39 Total: -1.00 -30.36 357.42 -9.00 -39.37 By element: Atomic # 1 Polarization: 9.86 SS G_CDS: -6.65 Total: 3.21 kcal Atomic # 6 Polarization: -23.16 SS G_CDS: -1.23 Total: -24.38 kcal Atomic # 7 Polarization: -44.75 SS G_CDS: 0.42 Total: -44.34 kcal Atomic # 8 Polarization: -48.91 SS G_CDS: -2.06 Total: -50.96 kcal Atomic # 14 Polarization: 19.45 SS G_CDS: -4.31 Total: 15.14 kcal Atomic # 16 Polarization: 57.14 SS G_CDS: -0.56 Total: 56.58 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -30.36 -9.00 -39.37 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001259200887.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.842 kcal (2) G-P(sol) polarization free energy of solvation -30.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.365 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds