Wall clock time and date at job start Tue Mar 31 2020 15:49:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.46603 * 2 1 4 4 N 1.46504 * 109.47094 * 179.97438 * 3 2 1 5 5 C 1.46506 * 119.99738 * 84.99608 * 4 3 2 6 6 C 1.50699 * 109.46928 * 85.00452 * 5 4 3 7 7 H 1.08003 * 119.99963 * 0.02562 * 6 5 4 8 8 C 1.37873 * 119.99865 * 179.97438 * 6 5 4 9 9 N 1.31514 * 120.00518 * 0.02562 * 8 6 5 10 10 Si 1.86803 * 119.99987 * 179.97438 * 8 6 5 11 11 H 1.48501 * 109.46948 * 0.02562 * 10 8 6 12 12 H 1.48501 * 109.47174 * 120.00320 * 10 8 6 13 13 H 1.48497 * 109.47378 * 240.00235 * 10 8 6 14 14 S 1.65593 * 120.00121 * 265.00144 * 4 3 2 15 15 O 1.42098 * 106.40615 * 23.53545 * 14 4 3 16 16 O 1.42104 * 106.40292 * 156.45650 * 14 4 3 17 17 C 1.76204 * 107.21858 * 269.99723 * 14 4 3 18 18 C 1.38160 * 120.02720 * 114.72199 * 17 14 4 19 19 C 1.38253 * 120.05220 * 179.74628 * 18 17 14 20 20 C 1.38282 * 120.11198 * 0.55308 * 19 18 17 21 21 C 1.50698 * 119.97343 * 179.72247 * 20 19 18 22 22 C 1.38128 * 120.05634 * 359.70145 * 20 19 18 23 23 C 1.38711 * 120.02758 * 294.99997 * 17 14 4 24 24 O 1.35906 * 120.05254 * 359.95252 * 23 17 14 25 25 C 1.42907 * 116.99616 * 180.02562 * 24 23 17 26 26 H 1.09000 * 109.47165 * 60.00267 * 1 2 3 27 27 H 1.09000 * 109.46949 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.47399 * 300.00017 * 1 2 3 29 29 H 1.08995 * 109.47399 * 239.99983 * 2 1 3 30 30 H 1.09000 * 109.47165 * 119.99733 * 2 1 3 31 31 H 1.08999 * 109.47686 * 59.99662 * 3 2 1 32 32 H 1.09000 * 109.47142 * 299.99747 * 3 2 1 33 33 H 1.09004 * 109.47073 * 205.00280 * 5 4 3 34 34 H 1.09000 * 109.47212 * 325.00363 * 5 4 3 35 35 H 0.96992 * 120.00316 * 179.97438 * 9 8 6 36 36 H 1.08002 * 119.97662 * 0.02562 * 18 17 14 37 37 H 1.07997 * 119.94085 * 180.25624 * 19 18 17 38 38 H 1.09008 * 109.47114 * 269.98237 * 21 20 19 39 39 H 1.09000 * 109.46789 * 29.97511 * 21 20 19 40 40 H 1.08995 * 109.47357 * 149.97871 * 21 20 19 41 41 H 1.07994 * 120.02513 * 180.02562 * 22 20 19 42 42 H 1.08997 * 109.46828 * 180.02562 * 25 24 23 43 43 H 1.08999 * 109.46889 * 300.00160 * 25 24 23 44 44 H 1.08997 * 109.47097 * 59.99988 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5049 1.4426 0.0006 5 6 4.2380 1.3318 -1.2630 6 6 4.3821 2.6985 -1.8816 7 1 3.9693 3.5631 -1.3831 8 6 5.0417 2.8451 -3.0834 9 7 5.5448 1.7923 -3.6902 10 14 5.2198 4.5390 -3.8505 11 1 4.5710 5.5490 -2.9762 12 1 6.6606 4.8661 -3.9992 13 1 4.5697 4.5486 -5.1856 14 16 4.3323 1.5679 1.4295 15 8 3.4503 1.1104 2.4454 16 8 5.6154 1.0013 1.2013 17 6 4.5929 3.2840 1.7327 18 6 3.9927 3.8933 2.8177 19 6 4.2011 5.2386 3.0591 20 6 5.0010 5.9801 2.2092 21 6 5.2210 7.4477 2.4717 22 6 5.5991 5.3767 1.1201 23 6 5.3962 4.0255 0.8789 24 8 5.9839 3.4294 -0.1917 25 6 6.7982 4.2543 -1.0275 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 1.8934 -0.5138 -0.8899 30 1 1.8934 -0.5138 0.8900 31 1 1.6765 1.9564 0.8899 32 1 1.6766 1.9563 -0.8900 33 1 5.2262 0.9124 -1.0742 34 1 3.6909 0.6804 -1.9445 35 1 6.0085 1.8955 -4.5358 36 1 3.3639 3.3173 3.4805 37 1 3.7343 5.7121 3.9101 38 1 4.4532 8.0275 1.9592 39 1 5.1645 7.6375 3.5435 40 1 6.2040 7.7396 2.1022 41 1 6.2241 5.9563 0.4569 42 1 7.2052 3.6560 -1.8426 43 1 6.1945 5.0639 -1.4378 44 1 7.6154 4.6724 -0.4399 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001259200887.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:49:31 Heat of formation + Delta-G solvation = -103.843280 kcal Electronic energy + Delta-G solvation = -28143.676226 eV Core-core repulsion = 24380.949719 eV Total energy + Delta-G solvation = -3762.726508 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.17232 -38.72717 -38.13745 -37.76086 -36.78802 -34.90686 -33.86745 -33.33339 -31.12829 -29.15297 -28.92099 -27.69341 -26.46828 -24.34013 -23.30446 -22.81726 -22.29137 -20.09413 -19.04401 -18.62102 -18.27698 -17.75639 -17.52387 -16.99659 -16.56016 -16.11503 -15.68730 -15.48643 -15.33338 -15.18103 -14.84992 -14.73902 -14.57440 -14.18619 -13.73784 -13.39111 -13.29709 -13.26014 -13.20899 -13.06419 -13.01606 -12.89665 -12.73039 -12.51775 -12.45522 -12.36938 -12.28439 -12.16166 -11.92920 -11.83303 -11.56013 -11.41230 -11.36037 -10.48019 -10.12092 -9.66978 -9.25884 -8.06508 -6.08469 -0.40566 -0.08503 0.44073 1.31245 1.40149 1.46295 2.09742 2.36230 2.43725 2.56278 2.87423 3.27299 3.47318 3.75779 3.85426 3.98247 4.09879 4.19538 4.22752 4.29164 4.30945 4.39829 4.52109 4.55631 4.63308 4.69787 4.80450 4.81969 4.82969 4.95826 5.04376 5.10245 5.13031 5.22810 5.24563 5.33205 5.39799 5.49014 5.49490 5.61546 5.82259 5.84975 6.03433 6.23507 6.41346 6.91229 7.49678 9.03319 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.008830 B = 0.008398 C = 0.005223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3170.339913 B = 3333.198109 C = 5359.695934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.145 4.145 3 C 0.127 3.873 4 N -0.986 5.986 5 C 0.264 3.736 6 C -0.488 4.488 7 H 0.059 0.941 8 C 0.021 3.979 9 N -0.928 5.928 10 Si 0.923 3.077 11 H -0.261 1.261 12 H -0.266 1.266 13 H -0.294 1.294 14 S 2.702 3.298 15 O -0.987 6.987 16 O -0.996 6.996 17 C -0.738 4.738 18 C 0.004 3.996 19 C -0.187 4.187 20 C 0.006 3.994 21 C -0.118 4.118 22 C -0.252 4.252 23 C 0.217 3.783 24 O -0.280 6.280 25 C 0.031 3.969 26 H 0.061 0.939 27 H 0.066 0.934 28 H 0.065 0.935 29 H 0.054 0.946 30 H 0.054 0.946 31 H 0.082 0.918 32 H 0.079 0.921 33 H 0.021 0.979 34 H 0.020 0.980 35 H 0.262 0.738 36 H 0.155 0.845 37 H 0.166 0.834 38 H 0.090 0.910 39 H 0.094 0.906 40 H 0.078 0.922 41 H 0.147 0.853 42 H 0.088 0.912 43 H 0.054 0.946 44 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.480 10.449 10.576 15.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.184 4.184 3 C 0.001 3.999 4 N -0.824 5.824 5 C 0.141 3.859 6 C -0.527 4.527 7 H 0.077 0.923 8 C -0.177 4.177 9 N -0.570 5.570 10 Si 0.749 3.251 11 H -0.185 1.185 12 H -0.191 1.191 13 H -0.221 1.221 14 S 2.796 3.204 15 O -0.978 6.978 16 O -0.986 6.986 17 C -0.829 4.829 18 C -0.015 4.015 19 C -0.206 4.206 20 C 0.006 3.994 21 C -0.175 4.175 22 C -0.271 4.271 23 C 0.167 3.833 24 O -0.189 6.189 25 C -0.064 4.064 26 H 0.080 0.920 27 H 0.085 0.915 28 H 0.084 0.916 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.101 0.899 32 H 0.098 0.902 33 H 0.039 0.961 34 H 0.038 0.962 35 H 0.071 0.929 36 H 0.173 0.827 37 H 0.183 0.817 38 H 0.109 0.891 39 H 0.113 0.887 40 H 0.097 0.903 41 H 0.164 0.836 42 H 0.107 0.893 43 H 0.072 0.928 44 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -4.097 9.491 10.840 14.979 hybrid contribution 0.517 1.177 -1.322 1.844 sum -3.580 10.668 9.518 14.738 Atomic orbital electron populations 1.21648 0.92943 1.02624 1.02561 1.21972 0.98014 0.96878 1.01550 1.21348 0.77956 0.97480 1.03102 1.57263 1.14881 1.87941 1.22339 1.18760 0.90719 0.96821 0.79603 1.21517 1.33317 0.93539 1.04353 0.92316 1.25451 0.95944 0.98944 0.97371 1.70052 1.38876 1.30489 1.17586 0.86205 0.78687 0.81859 0.78335 1.18522 1.19071 1.22129 1.01142 0.72495 0.74610 0.72196 1.93457 1.66366 1.80499 1.57433 1.93492 1.42230 1.77350 1.85555 1.29986 1.17313 1.26813 1.08742 1.21029 0.92594 0.96035 0.91866 1.21357 1.03123 0.93309 1.02780 1.20454 0.90315 0.97811 0.90827 1.21017 1.03581 0.88540 1.04315 1.21464 1.09045 0.93351 1.03282 1.18860 0.87705 0.92125 0.84596 1.86705 1.59956 1.38078 1.34183 1.23124 0.93444 0.95476 0.94311 0.91970 0.91537 0.91622 0.92721 0.92721 0.89936 0.90249 0.96146 0.96202 0.92880 0.82743 0.81677 0.89143 0.88749 0.90283 0.83585 0.89335 0.92800 0.90393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.43 9.91 71.98 0.71 -2.72 16 2 C -0.14 -4.74 6.26 30.59 0.19 -4.55 16 3 C 0.13 4.57 5.34 86.38 0.46 5.03 16 4 N -0.99 -43.22 2.77 -519.83 -1.44 -44.66 16 5 C 0.26 13.61 4.98 85.63 0.43 14.04 16 6 C -0.49 -25.02 5.74 25.60 0.15 -24.87 16 7 H 0.06 2.97 7.04 -2.91 -0.02 2.95 16 8 C 0.02 1.09 4.32 84.65 0.37 1.45 16 9 N -0.93 -52.38 13.29 21.45 0.28 -52.10 16 10 Si 0.92 39.95 25.36 68.60 1.74 41.69 16 11 H -0.26 -10.69 7.10 99.48 0.71 -9.98 16 12 H -0.27 -10.75 7.11 99.48 0.71 -10.04 16 13 H -0.29 -13.07 7.11 99.48 0.71 -12.36 16 14 S 2.70 118.14 5.23 -56.49 -0.30 117.84 16 15 O -0.99 -41.44 15.94 -128.00 -2.04 -43.48 16 16 O -1.00 -51.30 15.85 -122.92 -1.95 -53.25 16 17 C -0.74 -28.59 5.92 22.36 0.13 -28.45 16 18 C 0.00 0.12 9.55 22.25 0.21 0.34 16 19 C -0.19 -4.57 9.70 22.28 0.22 -4.35 16 20 C 0.01 0.16 5.88 -19.88 -0.12 0.04 16 21 C -0.12 -1.78 10.01 71.24 0.71 -1.07 16 22 C -0.25 -7.82 8.69 22.37 0.19 -7.63 16 23 C 0.22 8.52 6.16 22.51 0.14 8.66 16 24 O -0.28 -12.37 5.34 -83.19 -0.44 -12.81 16 25 C 0.03 1.15 7.22 113.37 0.82 1.97 16 26 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 27 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 28 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 29 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 30 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 31 H 0.08 2.64 7.61 -2.39 -0.02 2.62 16 32 H 0.08 2.84 8.11 -2.39 -0.02 2.82 16 33 H 0.02 1.20 6.91 -2.38 -0.02 1.18 16 34 H 0.02 1.08 8.11 -2.39 -0.02 1.06 16 35 H 0.26 14.03 8.31 -92.71 -0.77 13.26 16 36 H 0.16 4.20 7.33 -2.91 -0.02 4.18 16 37 H 0.17 2.67 8.06 -2.91 -0.02 2.64 16 38 H 0.09 1.20 8.14 -2.38 -0.02 1.18 16 39 H 0.09 1.02 8.08 -2.39 -0.02 1.00 16 40 H 0.08 1.07 8.08 -2.39 -0.02 1.06 16 41 H 0.15 3.91 6.30 -2.91 -0.02 3.89 16 42 H 0.09 3.63 6.81 -2.39 -0.02 3.61 16 43 H 0.05 1.90 5.38 -2.39 -0.01 1.89 16 44 H 0.08 2.30 7.66 -2.39 -0.02 2.28 16 Total: -1.00 -69.11 357.42 1.46 -67.65 By element: Atomic # 1 Polarization: 20.24 SS G_CDS: 0.99 Total: 21.23 kcal Atomic # 6 Polarization: -46.74 SS G_CDS: 4.61 Total: -42.12 kcal Atomic # 7 Polarization: -95.60 SS G_CDS: -1.15 Total: -96.76 kcal Atomic # 8 Polarization: -105.11 SS G_CDS: -4.43 Total: -109.54 kcal Atomic # 14 Polarization: 39.95 SS G_CDS: 1.74 Total: 41.69 kcal Atomic # 16 Polarization: 118.14 SS G_CDS: -0.30 Total: 117.84 kcal Total: -69.11 1.46 -67.65 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001259200887.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.194 kcal (2) G-P(sol) polarization free energy of solvation -69.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.649 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds