Wall clock time and date at job start Tue Mar 31 2020 15:07:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.46993 * 2 1 4 4 C 1.53001 * 109.46993 * 180.02562 * 3 2 1 5 5 N 1.46500 * 109.47419 * 180.02562 * 4 3 2 6 6 C 1.36942 * 119.99831 * 275.00055 * 5 4 3 7 7 H 1.08001 * 120.00003 * 145.98632 * 6 5 4 8 8 C 1.38807 * 119.99630 * 325.98869 * 6 5 4 9 9 N 1.31615 * 120.00352 * 337.55395 * 8 6 5 10 10 Si 1.86806 * 119.99642 * 157.55774 * 8 6 5 11 11 H 1.48503 * 109.47039 * 90.00149 * 10 8 6 12 12 H 1.48503 * 109.47240 * 209.99479 * 10 8 6 13 13 H 1.48498 * 109.47232 * 330.00172 * 10 8 6 14 14 S 1.65604 * 120.00117 * 94.99599 * 5 4 3 15 15 O 1.42095 * 106.40221 * 342.90906 * 14 5 4 16 16 O 1.42095 * 106.39993 * 209.98560 * 14 5 4 17 17 C 1.76203 * 107.21450 * 96.44547 * 14 5 4 18 18 C 1.38173 * 120.02245 * 115.27621 * 17 14 5 19 19 C 1.38250 * 120.04783 * 180.25346 * 18 17 14 20 20 C 1.38281 * 120.11449 * 359.76537 * 19 18 17 21 21 C 1.50706 * 119.97269 * 179.97438 * 20 19 18 22 22 C 1.38122 * 120.05707 * 359.95803 * 20 19 18 23 23 C 1.38704 * 120.02884 * 294.99708 * 17 14 5 24 24 O 1.35895 * 120.05757 * 0.02562 * 23 17 14 25 25 C 1.42902 * 117.00055 * 179.72106 * 24 23 17 26 26 H 1.08996 * 109.47441 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.46842 * 300.00189 * 1 2 3 28 28 H 1.09000 * 109.47070 * 59.99974 * 1 2 3 29 29 H 1.09001 * 109.46842 * 239.99811 * 2 1 3 30 30 H 1.09000 * 109.47070 * 120.00026 * 2 1 3 31 31 H 1.09001 * 109.47480 * 60.00202 * 3 2 1 32 32 H 1.09000 * 109.47234 * 299.99926 * 3 2 1 33 33 H 1.08996 * 109.47213 * 59.99529 * 4 3 2 34 34 H 1.09000 * 109.47070 * 300.00026 * 4 3 2 35 35 H 0.97008 * 119.99892 * 180.02562 * 9 8 6 36 36 H 1.07992 * 119.97622 * 359.97438 * 18 17 14 37 37 H 1.07999 * 119.94027 * 179.74901 * 19 18 17 38 38 H 1.08992 * 109.46707 * 269.97994 * 21 20 19 39 39 H 1.08999 * 109.46572 * 29.98325 * 21 20 19 40 40 H 1.09001 * 109.46929 * 149.97774 * 21 20 19 41 41 H 1.08003 * 120.02866 * 180.02562 * 22 20 19 42 42 H 1.09000 * 109.46836 * 179.97438 * 25 24 23 43 43 H 1.09005 * 109.46941 * 60.00451 * 25 24 23 44 44 H 1.08997 * 109.47454 * 300.00102 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 7 4.0584 2.8237 0.0000 6 6 4.1887 3.5043 -1.1811 7 1 4.0045 4.5680 -1.2146 8 6 4.5574 2.8271 -2.3353 9 7 5.1971 1.6801 -2.2495 10 14 4.1456 3.5439 -4.0106 11 1 5.2596 4.4151 -4.4636 12 1 3.9512 2.4415 -4.9864 13 1 2.8989 4.3447 -3.9135 14 16 4.4528 3.5619 1.4290 15 8 3.8497 2.7906 2.4588 16 8 4.2007 4.9484 1.2472 17 6 6.1945 3.3960 1.6382 18 6 7.0007 4.5181 1.6386 19 6 8.3679 4.3882 1.7975 20 6 8.9314 3.1361 1.9613 21 6 10.4222 2.9981 2.1337 22 6 8.1291 2.0118 1.9674 23 6 6.7566 2.1395 1.8085 24 8 5.9652 1.0348 1.8137 25 6 6.6133 -0.2269 1.9878 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.6767 1.9564 0.8900 32 1 1.6766 1.9563 -0.8900 33 1 3.9329 0.9287 -0.8908 34 1 3.9337 0.9285 0.8891 35 1 5.4551 1.2071 -3.0562 36 1 6.5630 5.4970 1.5102 37 1 8.9968 5.2661 1.7935 38 1 10.8915 2.8808 1.1570 39 1 10.8156 3.8901 2.6212 40 1 10.6375 2.1236 2.7477 41 1 8.5697 1.0341 2.0957 42 1 5.8688 -1.0229 1.9731 43 1 7.1370 -0.2374 2.9437 44 1 7.3283 -0.3826 1.1800 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001259201880.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:07:19 Heat of formation + Delta-G solvation = -96.295825 kcal Electronic energy + Delta-G solvation = -27691.858643 eV Core-core repulsion = 23929.459418 eV Total energy + Delta-G solvation = -3762.399226 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -39.69347 -37.23577 -36.31930 -35.59713 -34.28897 -33.79171 -32.41473 -31.43235 -29.70716 -28.07442 -27.65957 -26.27355 -24.70496 -22.24850 -21.83666 -21.40282 -20.29311 -18.42035 -17.83240 -16.89499 -16.38613 -15.92960 -15.74170 -15.30589 -14.73725 -14.61331 -14.14947 -13.90749 -13.89642 -13.59497 -13.52258 -13.33610 -13.16138 -12.33429 -12.17060 -12.13920 -11.94308 -11.85611 -11.55436 -11.42712 -11.30027 -11.21907 -10.95901 -10.80110 -10.65709 -10.60207 -10.55538 -10.55073 -10.34021 -10.21315 -9.96377 -9.59723 -9.53576 -9.11416 -8.55397 -7.85158 -7.69800 -6.47269 -4.04708 1.46438 1.90728 1.99797 3.12497 3.19267 3.27719 3.66052 3.97687 4.08183 4.61214 4.80910 4.97696 5.11514 5.17505 5.30248 5.37359 5.46458 5.50927 5.56682 5.60154 5.63621 5.73729 5.76336 5.82297 5.86532 6.07373 6.10246 6.18271 6.31038 6.34099 6.40138 6.47490 6.56659 6.64813 6.74236 6.79701 6.86434 6.93576 7.01632 7.22670 7.30411 7.44958 7.73019 7.76164 8.38767 8.79951 9.28700 10.46275 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.011218 B = 0.005942 C = 0.005068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2495.302987 B = 4710.931232 C = 5523.957895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.119 4.119 3 C -0.131 4.131 4 C 0.123 3.877 5 N -0.798 5.798 6 C -0.249 4.249 7 H 0.106 0.894 8 C 0.039 3.961 9 N -0.825 5.825 10 Si 0.917 3.083 11 H -0.274 1.274 12 H -0.280 1.280 13 H -0.264 1.264 14 S 2.552 3.448 15 O -0.996 6.996 16 O -0.992 6.992 17 C -0.683 4.683 18 C 0.007 3.993 19 C -0.187 4.187 20 C -0.023 4.023 21 C -0.115 4.115 22 C -0.234 4.234 23 C 0.228 3.772 24 O -0.296 6.296 25 C 0.030 3.970 26 H 0.045 0.955 27 H 0.051 0.949 28 H 0.051 0.949 29 H 0.059 0.941 30 H 0.057 0.943 31 H 0.053 0.947 32 H 0.064 0.936 33 H 0.106 0.894 34 H 0.066 0.934 35 H 0.271 0.729 36 H 0.138 0.862 37 H 0.120 0.880 38 H 0.072 0.928 39 H 0.067 0.933 40 H 0.064 0.936 41 H 0.125 0.875 42 H 0.100 0.900 43 H 0.050 0.950 44 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.746 -4.503 3.114 7.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.157 4.157 3 C -0.171 4.171 4 C -0.004 4.004 5 N -0.622 5.622 6 C -0.396 4.396 7 H 0.124 0.876 8 C -0.174 4.174 9 N -0.464 5.464 10 Si 0.743 3.257 11 H -0.200 1.200 12 H -0.205 1.205 13 H -0.188 1.188 14 S 2.651 3.349 15 O -0.986 6.986 16 O -0.983 6.983 17 C -0.762 4.762 18 C -0.012 4.012 19 C -0.206 4.206 20 C -0.023 4.023 21 C -0.171 4.171 22 C -0.254 4.254 23 C 0.181 3.819 24 O -0.207 6.207 25 C -0.065 4.065 26 H 0.065 0.935 27 H 0.070 0.930 28 H 0.070 0.930 29 H 0.077 0.923 30 H 0.076 0.924 31 H 0.072 0.928 32 H 0.082 0.918 33 H 0.124 0.876 34 H 0.084 0.916 35 H 0.082 0.918 36 H 0.156 0.844 37 H 0.138 0.862 38 H 0.091 0.909 39 H 0.086 0.914 40 H 0.083 0.917 41 H 0.142 0.858 42 H 0.118 0.882 43 H 0.068 0.932 44 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 4.151 -4.248 3.875 7.091 hybrid contribution 1.130 -0.107 -0.931 1.468 sum 5.280 -4.354 2.945 7.451 Atomic orbital electron populations 1.21766 0.96720 1.00574 1.01597 1.21422 0.94937 0.97830 1.01503 1.21976 0.97881 0.95414 1.01792 1.21448 0.91307 0.83300 1.04337 1.53516 1.66204 1.22849 1.19623 1.19724 1.40458 0.95514 0.83887 0.87621 1.25689 0.94429 0.96536 1.00741 1.69982 1.31204 1.15149 1.30054 0.86072 0.79744 0.78938 0.80988 1.20005 1.20547 1.18772 1.10131 0.74530 0.74441 0.75779 1.93352 1.75715 1.70823 1.58684 1.93333 1.84526 1.33773 1.86632 1.31332 1.32443 0.95104 1.17368 1.20749 0.92929 0.97427 0.90122 1.20937 0.95274 0.96602 1.07808 1.19737 0.95316 0.92970 0.94284 1.20831 0.91714 1.02420 1.02165 1.21029 0.92785 0.99015 1.12543 1.18265 0.88978 0.85941 0.88754 1.86216 1.34976 1.13431 1.86115 1.23024 0.99317 0.83786 1.00386 0.93544 0.92997 0.92994 0.92271 0.92403 0.92835 0.91765 0.87635 0.91558 0.91823 0.84407 0.86166 0.90914 0.91443 0.91724 0.85756 0.88178 0.93177 0.92547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.11 9.91 37.16 0.37 -1.74 16 2 C -0.12 -1.96 5.93 -26.73 -0.16 -2.12 16 3 C -0.13 -2.65 5.51 -26.73 -0.15 -2.80 16 4 C 0.12 2.78 4.77 -4.04 -0.02 2.76 16 5 N -0.80 -19.78 2.84 -59.91 -0.17 -19.95 16 6 C -0.25 -6.31 9.18 -15.06 -0.14 -6.45 16 7 H 0.11 2.70 7.46 -52.49 -0.39 2.31 16 8 C 0.04 0.93 5.01 -17.43 -0.09 0.84 16 9 N -0.83 -20.09 11.23 55.49 0.62 -19.47 16 10 Si 0.92 18.84 29.61 -169.99 -5.03 13.80 16 11 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 12 H -0.28 -5.65 7.11 56.52 0.40 -5.25 16 13 H -0.26 -5.39 7.11 56.52 0.40 -4.99 16 14 S 2.55 64.24 5.19 -107.50 -0.56 63.69 16 15 O -1.00 -26.21 16.06 -62.48 -1.00 -27.21 16 16 O -0.99 -26.59 16.00 -57.17 -0.91 -27.51 16 17 C -0.68 -15.73 5.92 -39.43 -0.23 -15.97 16 18 C 0.01 0.14 9.55 -39.60 -0.38 -0.24 16 19 C -0.19 -3.28 9.70 -39.56 -0.38 -3.67 16 20 C -0.02 -0.37 5.88 -104.65 -0.62 -0.99 16 21 C -0.11 -1.35 10.01 36.01 0.36 -0.99 16 22 C -0.23 -4.18 8.69 -39.43 -0.34 -4.52 16 23 C 0.23 4.84 6.63 -39.22 -0.26 4.58 16 24 O -0.30 -6.03 7.15 -29.09 -0.21 -6.24 16 25 C 0.03 0.44 9.81 101.05 0.99 1.43 16 26 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 30 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 31 H 0.05 1.13 8.14 -51.93 -0.42 0.70 16 32 H 0.06 1.32 8.14 -51.93 -0.42 0.89 16 33 H 0.11 2.48 5.29 -51.93 -0.27 2.21 16 34 H 0.07 1.50 5.44 -51.93 -0.28 1.21 16 35 H 0.27 6.19 8.31 -40.82 -0.34 5.85 16 36 H 0.14 2.74 7.33 -52.49 -0.38 2.36 16 37 H 0.12 1.71 8.06 -52.49 -0.42 1.29 16 38 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.07 0.69 8.08 -51.93 -0.42 0.27 16 40 H 0.06 0.67 8.08 -51.93 -0.42 0.25 16 41 H 0.12 1.82 6.30 -52.48 -0.33 1.49 16 42 H 0.10 1.23 8.14 -51.93 -0.42 0.81 16 43 H 0.05 0.62 7.66 -51.93 -0.40 0.22 16 44 H 0.06 0.77 7.66 -51.93 -0.40 0.37 16 LS Contribution 368.88 15.07 5.56 5.56 Total: -1.00 -30.89 368.88 -9.41 -40.30 By element: Atomic # 1 Polarization: 13.55 SS G_CDS: -6.66 Total: 6.89 kcal Atomic # 6 Polarization: -28.82 SS G_CDS: -1.04 Total: -29.86 kcal Atomic # 7 Polarization: -39.87 SS G_CDS: 0.45 Total: -39.41 kcal Atomic # 8 Polarization: -58.84 SS G_CDS: -2.13 Total: -60.96 kcal Atomic # 14 Polarization: 18.84 SS G_CDS: -5.03 Total: 13.80 kcal Atomic # 16 Polarization: 64.24 SS G_CDS: -0.56 Total: 63.69 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -30.89 -9.41 -40.30 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001259201880.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.993 kcal (2) G-P(sol) polarization free energy of solvation -30.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.303 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds