Wall clock time and date at job start Tue Mar 31 2020 15:07:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.46993 * 2 1 4 4 C 1.53001 * 109.46993 * 180.02562 * 3 2 1 5 5 N 1.46500 * 109.47419 * 180.02562 * 4 3 2 6 6 C 1.36942 * 119.99831 * 275.00055 * 5 4 3 7 7 H 1.08001 * 120.00003 * 145.98632 * 6 5 4 8 8 C 1.38807 * 119.99630 * 325.98869 * 6 5 4 9 9 N 1.31615 * 120.00352 * 337.55395 * 8 6 5 10 10 Si 1.86806 * 119.99642 * 157.55774 * 8 6 5 11 11 H 1.48503 * 109.47039 * 90.00149 * 10 8 6 12 12 H 1.48503 * 109.47240 * 209.99479 * 10 8 6 13 13 H 1.48498 * 109.47232 * 330.00172 * 10 8 6 14 14 S 1.65604 * 120.00117 * 94.99599 * 5 4 3 15 15 O 1.42095 * 106.40221 * 342.90906 * 14 5 4 16 16 O 1.42095 * 106.39993 * 209.98560 * 14 5 4 17 17 C 1.76203 * 107.21450 * 96.44547 * 14 5 4 18 18 C 1.38173 * 120.02245 * 115.27621 * 17 14 5 19 19 C 1.38250 * 120.04783 * 180.25346 * 18 17 14 20 20 C 1.38281 * 120.11449 * 359.76537 * 19 18 17 21 21 C 1.50706 * 119.97269 * 179.97438 * 20 19 18 22 22 C 1.38122 * 120.05707 * 359.95803 * 20 19 18 23 23 C 1.38704 * 120.02884 * 294.99708 * 17 14 5 24 24 O 1.35895 * 120.05757 * 0.02562 * 23 17 14 25 25 C 1.42902 * 117.00055 * 179.72106 * 24 23 17 26 26 H 1.08996 * 109.47441 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.46842 * 300.00189 * 1 2 3 28 28 H 1.09000 * 109.47070 * 59.99974 * 1 2 3 29 29 H 1.09001 * 109.46842 * 239.99811 * 2 1 3 30 30 H 1.09000 * 109.47070 * 120.00026 * 2 1 3 31 31 H 1.09001 * 109.47480 * 60.00202 * 3 2 1 32 32 H 1.09000 * 109.47234 * 299.99926 * 3 2 1 33 33 H 1.08996 * 109.47213 * 59.99529 * 4 3 2 34 34 H 1.09000 * 109.47070 * 300.00026 * 4 3 2 35 35 H 0.97008 * 119.99892 * 180.02562 * 9 8 6 36 36 H 1.07992 * 119.97622 * 359.97438 * 18 17 14 37 37 H 1.07999 * 119.94027 * 179.74901 * 19 18 17 38 38 H 1.08992 * 109.46707 * 269.97994 * 21 20 19 39 39 H 1.08999 * 109.46572 * 29.98325 * 21 20 19 40 40 H 1.09001 * 109.46929 * 149.97774 * 21 20 19 41 41 H 1.08003 * 120.02866 * 180.02562 * 22 20 19 42 42 H 1.09000 * 109.46836 * 179.97438 * 25 24 23 43 43 H 1.09005 * 109.46941 * 60.00451 * 25 24 23 44 44 H 1.08997 * 109.47454 * 300.00102 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 7 4.0584 2.8237 0.0000 6 6 4.1887 3.5043 -1.1811 7 1 4.0045 4.5680 -1.2146 8 6 4.5574 2.8271 -2.3353 9 7 5.1971 1.6801 -2.2495 10 14 4.1456 3.5439 -4.0106 11 1 5.2596 4.4151 -4.4636 12 1 3.9512 2.4415 -4.9864 13 1 2.8989 4.3447 -3.9135 14 16 4.4528 3.5619 1.4290 15 8 3.8497 2.7906 2.4588 16 8 4.2007 4.9484 1.2472 17 6 6.1945 3.3960 1.6382 18 6 7.0007 4.5181 1.6386 19 6 8.3679 4.3882 1.7975 20 6 8.9314 3.1361 1.9613 21 6 10.4222 2.9981 2.1337 22 6 8.1291 2.0118 1.9674 23 6 6.7566 2.1395 1.8085 24 8 5.9652 1.0348 1.8137 25 6 6.6133 -0.2269 1.9878 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.6767 1.9564 0.8900 32 1 1.6766 1.9563 -0.8900 33 1 3.9329 0.9287 -0.8908 34 1 3.9337 0.9285 0.8891 35 1 5.4551 1.2071 -3.0562 36 1 6.5630 5.4970 1.5102 37 1 8.9968 5.2661 1.7935 38 1 10.8915 2.8808 1.1570 39 1 10.8156 3.8901 2.6212 40 1 10.6375 2.1236 2.7477 41 1 8.5697 1.0341 2.0957 42 1 5.8688 -1.0229 1.9731 43 1 7.1370 -0.2374 2.9437 44 1 7.3283 -0.3826 1.1800 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001259201880.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:07:18 Heat of formation + Delta-G solvation = -114.900309 kcal Electronic energy + Delta-G solvation = -27692.665394 eV Core-core repulsion = 23929.459418 eV Total energy + Delta-G solvation = -3763.205977 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.11731 -38.66608 -38.07090 -37.60156 -36.32900 -35.34109 -33.74161 -33.24982 -31.12818 -29.65367 -28.83257 -27.52224 -26.50267 -23.84284 -23.27483 -22.80190 -21.81659 -20.26894 -19.49504 -18.59664 -18.18124 -17.62703 -17.24493 -16.76176 -16.48290 -16.14654 -15.88912 -15.39816 -15.28004 -15.10088 -14.86535 -14.66117 -14.54518 -13.93956 -13.71991 -13.25189 -13.21445 -13.16317 -13.09936 -13.06513 -12.97291 -12.68255 -12.58311 -12.55636 -12.50929 -12.32544 -12.13238 -11.90974 -11.87237 -11.73741 -11.59769 -11.27419 -11.27300 -10.92850 -9.99926 -9.59620 -9.25875 -8.31376 -5.98159 -0.06855 0.16193 0.44834 1.47986 1.51417 1.64247 2.28151 2.34459 2.52561 2.80150 2.93951 3.28840 3.70565 3.79471 3.99091 4.15968 4.20972 4.24162 4.30858 4.38895 4.40436 4.43563 4.59290 4.63440 4.68106 4.69943 4.79718 4.82910 4.93568 4.99457 5.03965 5.09074 5.11541 5.23096 5.26788 5.28955 5.33890 5.47699 5.49252 5.50060 5.69911 5.84494 5.90480 6.37188 6.48959 6.89966 7.40156 8.62930 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.011218 B = 0.005942 C = 0.005068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2495.302987 B = 4710.931232 C = 5523.957895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.114 4.114 3 C -0.129 4.129 4 C 0.125 3.875 5 N -0.806 5.806 6 C -0.279 4.279 7 H 0.090 0.910 8 C 0.012 3.988 9 N -0.841 5.841 10 Si 0.976 3.024 11 H -0.272 1.272 12 H -0.267 1.267 13 H -0.265 1.265 14 S 2.555 3.445 15 O -1.019 7.019 16 O -1.023 7.023 17 C -0.724 4.724 18 C -0.017 4.017 19 C -0.188 4.188 20 C -0.014 4.014 21 C -0.112 4.112 22 C -0.237 4.237 23 C 0.210 3.790 24 O -0.326 6.326 25 C 0.018 3.982 26 H 0.071 0.929 27 H 0.049 0.951 28 H 0.053 0.947 29 H 0.066 0.934 30 H 0.062 0.938 31 H 0.036 0.964 32 H 0.056 0.944 33 H 0.099 0.901 34 H 0.062 0.938 35 H 0.279 0.721 36 H 0.130 0.870 37 H 0.155 0.845 38 H 0.087 0.913 39 H 0.087 0.913 40 H 0.084 0.916 41 H 0.158 0.842 42 H 0.117 0.883 43 H 0.073 0.927 44 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.882 -5.954 2.569 9.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.152 4.152 3 C -0.168 4.168 4 C -0.001 4.001 5 N -0.630 5.630 6 C -0.425 4.425 7 H 0.108 0.892 8 C -0.199 4.199 9 N -0.479 5.479 10 Si 0.798 3.202 11 H -0.197 1.197 12 H -0.192 1.192 13 H -0.189 1.189 14 S 2.659 3.341 15 O -1.009 7.009 16 O -1.013 7.013 17 C -0.807 4.807 18 C -0.036 4.036 19 C -0.206 4.206 20 C -0.014 4.014 21 C -0.168 4.168 22 C -0.256 4.256 23 C 0.162 3.838 24 O -0.238 6.238 25 C -0.076 4.076 26 H 0.090 0.910 27 H 0.068 0.932 28 H 0.073 0.927 29 H 0.084 0.916 30 H 0.080 0.920 31 H 0.055 0.945 32 H 0.075 0.925 33 H 0.117 0.883 34 H 0.080 0.920 35 H 0.089 0.911 36 H 0.148 0.852 37 H 0.173 0.827 38 H 0.106 0.894 39 H 0.106 0.894 40 H 0.103 0.897 41 H 0.176 0.824 42 H 0.136 0.864 43 H 0.092 0.908 44 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 6.245 -5.717 3.327 9.097 hybrid contribution 0.630 0.302 -0.669 0.968 sum 6.876 -5.415 2.657 9.146 Atomic orbital electron populations 1.21740 0.94619 1.02288 1.01653 1.21400 0.96767 0.94996 1.02052 1.21964 0.96404 0.97955 1.00528 1.21492 0.92622 0.82357 1.03609 1.53445 1.67145 1.23391 1.19066 1.19746 1.42538 0.95334 0.84867 0.89195 1.26325 0.93655 0.96750 1.03140 1.70027 1.31033 1.15675 1.31212 0.85206 0.79321 0.78554 0.77108 1.19697 1.19171 1.18922 1.09515 0.75316 0.73602 0.75646 1.93296 1.77025 1.71028 1.59531 1.93271 1.85647 1.35384 1.87034 1.30919 1.30977 0.97275 1.21567 1.20897 0.94714 0.96578 0.91430 1.21345 0.94045 0.98748 1.06490 1.20384 0.98011 0.91887 0.91149 1.20947 0.87729 1.04499 1.03609 1.21462 0.91427 1.01237 1.11522 1.18522 0.90529 0.85581 0.89158 1.86168 1.36639 1.14868 1.86169 1.23398 1.00321 0.81917 1.01989 0.90963 0.93214 0.92749 0.91572 0.91965 0.94513 0.92525 0.88343 0.91966 0.91120 0.85224 0.82708 0.89442 0.89393 0.89668 0.82426 0.86449 0.90834 0.91558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 25. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.93 9.91 71.98 0.71 -3.22 16 2 C -0.11 -3.72 5.93 30.59 0.18 -3.54 16 3 C -0.13 -5.39 5.51 30.59 0.17 -5.23 16 4 C 0.13 5.90 4.77 86.38 0.41 6.31 16 5 N -0.81 -41.92 2.84 -343.45 -0.98 -42.89 16 6 C -0.28 -14.73 9.18 84.03 0.77 -13.96 16 7 H 0.09 4.90 7.46 -2.91 -0.02 4.88 16 8 C 0.01 0.61 5.01 84.86 0.42 1.03 16 9 N -0.84 -41.17 11.23 21.65 0.24 -40.92 16 10 Si 0.98 38.61 29.61 68.60 2.03 40.64 16 11 H -0.27 -10.59 7.11 99.48 0.71 -9.89 16 12 H -0.27 -9.97 7.11 99.48 0.71 -9.26 16 13 H -0.26 -10.48 7.11 99.48 0.71 -9.78 16 14 S 2.56 136.17 5.19 -56.49 -0.29 135.88 16 15 O -1.02 -56.61 16.06 -122.93 -1.97 -58.59 16 16 O -1.02 -58.52 16.00 -128.00 -2.05 -60.57 16 17 C -0.72 -34.53 5.92 22.37 0.13 -34.39 16 18 C -0.02 -0.72 9.55 22.26 0.21 -0.51 16 19 C -0.19 -6.27 9.70 22.28 0.22 -6.06 16 20 C -0.01 -0.42 5.88 -19.88 -0.12 -0.53 16 21 C -0.11 -2.09 10.01 71.24 0.71 -1.37 16 22 C -0.24 -7.97 8.69 22.37 0.19 -7.77 16 23 C 0.21 8.95 6.63 22.51 0.15 9.10 16 24 O -0.33 -13.43 7.15 -83.11 -0.59 -14.02 16 25 C 0.02 0.49 9.81 113.37 1.11 1.60 16 26 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 27 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 28 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 29 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 30 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 31 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 32 H 0.06 2.41 8.14 -2.39 -0.02 2.39 16 33 H 0.10 4.76 5.29 -2.39 -0.01 4.75 16 34 H 0.06 2.93 5.44 -2.39 -0.01 2.92 16 35 H 0.28 12.55 8.31 -92.70 -0.77 11.78 16 36 H 0.13 5.48 7.33 -2.91 -0.02 5.46 16 37 H 0.16 3.96 8.06 -2.91 -0.02 3.94 16 38 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 39 H 0.09 1.34 8.08 -2.39 -0.02 1.32 16 40 H 0.08 1.30 8.08 -2.39 -0.02 1.28 16 41 H 0.16 4.07 6.30 -2.91 -0.02 4.05 16 42 H 0.12 2.75 8.14 -2.39 -0.02 2.73 16 43 H 0.07 1.66 7.66 -2.38 -0.02 1.64 16 44 H 0.07 1.68 7.66 -2.39 -0.02 1.66 16 Total: -1.00 -70.46 368.88 2.66 -67.80 By element: Atomic # 1 Polarization: 30.22 SS G_CDS: 0.99 Total: 31.21 kcal Atomic # 6 Polarization: -63.82 SS G_CDS: 5.29 Total: -58.54 kcal Atomic # 7 Polarization: -83.08 SS G_CDS: -0.73 Total: -83.82 kcal Atomic # 8 Polarization: -128.56 SS G_CDS: -4.62 Total: -133.17 kcal Atomic # 14 Polarization: 38.61 SS G_CDS: 2.03 Total: 40.64 kcal Atomic # 16 Polarization: 136.17 SS G_CDS: -0.29 Total: 135.88 kcal Total: -70.46 2.66 -67.80 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001259201880.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.101 kcal (2) G-P(sol) polarization free energy of solvation -70.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.799 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds