Wall clock time and date at job start Tue Mar 31 2020 15:06:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.47056 * 2 1 4 4 C 1.53001 * 109.46730 * 179.97438 * 3 2 1 5 5 N 1.46505 * 109.46790 * 179.97438 * 4 3 2 6 6 C 1.46500 * 120.00283 * 85.00326 * 5 4 3 7 7 C 1.50699 * 109.47044 * 65.30038 * 6 5 4 8 8 H 1.07994 * 120.00406 * 4.41961 * 7 6 5 9 9 C 1.37875 * 119.99504 * 184.42922 * 7 6 5 10 10 N 1.31507 * 120.00482 * 2.65668 * 9 7 6 11 11 Si 1.86803 * 119.99876 * 182.65691 * 9 7 6 12 12 H 1.48497 * 109.47125 * 65.11554 * 11 9 7 13 13 H 1.48495 * 109.47352 * 185.12026 * 11 9 7 14 14 H 1.48501 * 109.47094 * 305.11931 * 11 9 7 15 15 S 1.65603 * 119.99660 * 264.99755 * 5 4 3 16 16 O 1.42101 * 106.40274 * 30.72306 * 15 5 4 17 17 O 1.42103 * 106.39656 * 163.64027 * 15 5 4 18 18 C 1.76198 * 107.21837 * 277.17953 * 15 5 4 19 19 C 1.38167 * 120.02956 * 114.40224 * 18 15 5 20 20 C 1.38238 * 120.05881 * 179.97438 * 19 18 15 21 21 C 1.38287 * 120.11405 * 0.02707 * 20 19 18 22 22 C 1.38127 * 120.05325 * 0.02562 * 21 20 19 23 23 C 1.38710 * 120.03061 * 294.12165 * 18 15 5 24 24 O 1.35908 * 120.05376 * 0.02562 * 23 18 15 25 25 C 1.42896 * 116.99704 * 184.78875 * 24 23 18 26 26 H 1.08998 * 109.47229 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47182 * 300.00554 * 1 2 3 28 28 H 1.08996 * 109.46908 * 60.00206 * 1 2 3 29 29 H 1.08993 * 109.47426 * 239.99425 * 2 1 3 30 30 H 1.09009 * 109.46676 * 119.99613 * 2 1 3 31 31 H 1.08997 * 109.47270 * 60.00362 * 3 2 1 32 32 H 1.09001 * 109.46723 * 299.99426 * 3 2 1 33 33 H 1.09001 * 109.47190 * 59.99641 * 4 3 2 34 34 H 1.08996 * 109.47226 * 299.99789 * 4 3 2 35 35 H 1.08995 * 109.47054 * 185.30219 * 6 5 4 36 36 H 1.09005 * 109.46287 * 305.30036 * 6 5 4 37 37 H 0.97004 * 120.00322 * 180.02562 * 10 9 7 38 38 H 1.08004 * 119.96519 * 359.97438 * 19 18 15 39 39 H 1.08005 * 119.94410 * 179.97438 * 20 19 18 40 40 H 1.07993 * 119.97701 * 179.97438 * 21 20 19 41 41 H 1.07992 * 120.02883 * 179.97438 * 22 21 20 42 42 H 1.08999 * 109.47599 * 301.69237 * 25 24 23 43 43 H 1.08998 * 109.47290 * 61.69371 * 25 24 23 44 44 H 1.09008 * 109.47008 * 181.69291 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4424 0.0006 5 7 4.0584 2.8237 0.0000 6 6 4.1978 3.5520 1.2635 7 6 5.2621 2.8971 2.1059 8 1 5.8320 2.0701 1.7091 9 6 5.5080 3.3539 3.3833 10 7 4.7790 4.3262 3.8858 11 14 6.8769 2.5915 4.4004 12 1 8.1866 2.8786 3.7621 13 1 6.8563 3.1674 5.7690 14 1 6.6759 1.1222 4.4787 15 16 4.4529 3.5617 -1.4290 16 8 3.6045 2.9976 -2.4196 17 8 4.5114 4.9555 -1.1579 18 6 6.0933 3.0649 -1.8372 19 6 6.3225 2.2904 -2.9581 20 6 7.6094 1.9007 -3.2792 21 6 8.6704 2.2843 -2.4795 22 6 8.4465 3.0577 -1.3572 23 6 7.1565 3.4559 -1.0366 24 8 6.9343 4.2221 0.0637 25 6 8.0838 4.6748 0.7818 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 1.8934 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8901 31 1 1.6768 1.9563 0.8900 32 1 1.6767 1.9563 -0.8901 33 1 3.9337 0.9284 -0.8891 34 1 3.9330 0.9288 0.8908 35 1 4.4808 4.5844 1.0585 36 1 3.2487 3.5349 1.7993 37 1 4.9523 4.6478 4.7845 38 1 5.4955 1.9892 -3.5840 39 1 7.7864 1.2949 -4.1557 40 1 9.6748 1.9783 -2.7322 41 1 9.2753 3.3566 -0.7327 42 1 8.6701 3.8159 1.1079 43 1 8.6924 5.3050 0.1333 44 1 7.7656 5.2491 1.6520 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001259298152.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:06:47 Heat of formation + Delta-G solvation = -92.292575 kcal Electronic energy + Delta-G solvation = -27707.651059 eV Core-core repulsion = 23945.425428 eV Total energy + Delta-G solvation = -3762.225632 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -39.86021 -37.23450 -36.60908 -36.27338 -35.10431 -33.91166 -32.29867 -31.22837 -29.93530 -28.67412 -26.96044 -26.44353 -23.40773 -23.05331 -22.03689 -21.77650 -20.61771 -18.71145 -17.78005 -16.84865 -16.55580 -16.23297 -16.05980 -15.35999 -15.18100 -14.81980 -14.72422 -14.42586 -14.22650 -13.70921 -13.52436 -13.35263 -12.76899 -12.55064 -12.47572 -12.20787 -12.19736 -11.78357 -11.54336 -11.38320 -11.33121 -11.25176 -11.23604 -11.13604 -10.93590 -10.77717 -10.71484 -10.58628 -10.46721 -10.20353 -10.09442 -9.83447 -9.60845 -9.20283 -8.46432 -8.13747 -7.88480 -6.03594 -4.05171 0.98139 1.26735 1.56018 3.20632 3.30108 3.30676 3.54564 3.59065 3.86756 4.37966 4.42171 4.80474 4.89286 5.16104 5.20385 5.25865 5.30305 5.31322 5.44549 5.47289 5.54864 5.58581 5.60670 5.71539 5.87073 6.01562 6.04429 6.06098 6.08130 6.15292 6.23870 6.30283 6.36496 6.45940 6.46411 6.52356 6.84694 6.85259 6.89580 7.48633 7.55056 7.58709 7.76278 7.93781 8.28694 8.96120 9.55868 11.05159 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.008237 B = 0.007795 C = 0.004848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3398.497520 B = 3591.231736 C = 5774.084025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.121 4.121 3 C -0.140 4.140 4 C 0.135 3.865 5 N -0.977 5.977 6 C 0.248 3.752 7 C -0.509 4.509 8 H 0.057 0.943 9 C 0.063 3.937 10 N -0.892 5.892 11 Si 0.883 3.117 12 H -0.280 1.280 13 H -0.288 1.288 14 H -0.278 1.278 15 S 2.692 3.308 16 O -0.981 6.981 17 O -0.953 6.953 18 C -0.712 4.712 19 C 0.009 3.991 20 C -0.193 4.193 21 C -0.033 4.033 22 C -0.238 4.238 23 C 0.241 3.759 24 O -0.267 6.267 25 C 0.035 3.965 26 H 0.048 0.952 27 H 0.053 0.947 28 H 0.052 0.948 29 H 0.059 0.941 30 H 0.062 0.938 31 H 0.070 0.930 32 H 0.065 0.935 33 H 0.058 0.942 34 H 0.085 0.915 35 H 0.058 0.942 36 H 0.034 0.966 37 H 0.262 0.738 38 H 0.143 0.857 39 H 0.126 0.874 40 H 0.125 0.875 41 H 0.133 0.867 42 H 0.054 0.946 43 H 0.049 0.951 44 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.122 -5.678 -9.701 11.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.159 4.159 3 C -0.179 4.179 4 C 0.009 3.991 5 N -0.816 5.816 6 C 0.126 3.874 7 C -0.549 4.549 8 H 0.075 0.925 9 C -0.139 4.139 10 N -0.532 5.532 11 Si 0.711 3.289 12 H -0.206 1.206 13 H -0.213 1.213 14 H -0.203 1.203 15 S 2.781 3.219 16 O -0.971 6.971 17 O -0.943 6.943 18 C -0.798 4.798 19 C -0.010 4.010 20 C -0.212 4.212 21 C -0.051 4.051 22 C -0.257 4.257 23 C 0.191 3.809 24 O -0.176 6.176 25 C -0.059 4.059 26 H 0.067 0.933 27 H 0.072 0.928 28 H 0.071 0.929 29 H 0.077 0.923 30 H 0.081 0.919 31 H 0.089 0.911 32 H 0.084 0.916 33 H 0.076 0.924 34 H 0.103 0.897 35 H 0.076 0.924 36 H 0.052 0.948 37 H 0.072 0.928 38 H 0.161 0.839 39 H 0.144 0.856 40 H 0.143 0.857 41 H 0.151 0.849 42 H 0.073 0.927 43 H 0.067 0.933 44 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 3.424 -4.903 -9.885 11.553 hybrid contribution 1.988 -0.884 0.914 2.360 sum 5.411 -5.787 -8.971 11.969 Atomic orbital electron populations 1.21758 0.96275 1.00922 1.01820 1.21445 0.95539 0.97176 1.01736 1.22058 0.96489 0.96480 1.02880 1.21050 0.93151 0.82721 1.02194 1.57334 1.77675 1.23209 1.23348 1.19229 0.97479 0.92456 0.78226 1.21302 1.18639 1.16673 0.98282 0.92491 1.24856 0.96323 0.95293 0.97424 1.69922 1.39212 1.27509 1.16539 0.86824 0.82747 0.79669 0.79620 1.20566 1.21339 1.20329 1.01874 0.73435 0.73877 0.72712 1.93493 1.64054 1.80042 1.59514 1.93555 1.86746 1.29545 1.84444 1.30492 1.23925 1.18720 1.06633 1.20788 0.97950 0.90019 0.92227 1.21047 0.92796 1.05254 1.02095 1.21131 0.98934 0.92682 0.92380 1.21343 0.96214 1.06488 1.01654 1.18507 0.92313 0.85666 0.84420 1.86454 1.34176 1.61830 1.35181 1.23093 0.87418 0.99022 0.96413 0.93287 0.92753 0.92883 0.92270 0.91949 0.91136 0.91640 0.92372 0.89676 0.92393 0.94770 0.92803 0.83948 0.85564 0.85683 0.84934 0.92705 0.93251 0.87216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.82 9.91 37.16 0.37 -1.45 16 2 C -0.12 -1.64 5.93 -26.73 -0.16 -1.80 16 3 C -0.14 -2.33 5.54 -26.73 -0.15 -2.48 16 4 C 0.14 2.46 5.23 -4.04 -0.02 2.44 16 5 N -0.98 -20.64 2.88 -115.66 -0.33 -20.97 16 6 C 0.25 6.12 5.03 -5.19 -0.03 6.09 16 7 C -0.51 -12.90 7.37 -34.44 -0.25 -13.16 16 8 H 0.06 1.43 7.76 -52.49 -0.41 1.02 16 9 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 10 N -0.89 -24.79 13.29 55.43 0.74 -24.05 16 11 Si 0.88 20.05 29.54 -169.99 -5.02 15.03 16 12 H -0.28 -6.07 7.11 56.52 0.40 -5.66 16 13 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 14 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 15 S 2.69 55.92 5.21 -107.50 -0.56 55.36 16 16 O -0.98 -20.13 16.01 -57.17 -0.92 -21.05 16 17 O -0.95 -22.69 15.61 -62.78 -0.98 -23.67 16 18 C -0.71 -13.22 5.92 -39.43 -0.23 -13.45 16 19 C 0.01 0.14 9.55 -39.61 -0.38 -0.23 16 20 C -0.19 -2.51 10.04 -39.56 -0.40 -2.91 16 21 C -0.03 -0.42 10.04 -39.60 -0.40 -0.82 16 22 C -0.24 -3.57 9.06 -39.43 -0.36 -3.93 16 23 C 0.24 4.46 6.63 -39.22 -0.26 4.20 16 24 O -0.27 -5.41 7.21 -30.21 -0.22 -5.63 16 25 C 0.04 0.58 9.84 101.05 0.99 1.57 16 26 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 30 H 0.06 0.82 8.14 -51.92 -0.42 0.40 16 31 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 32 H 0.06 1.12 7.94 -51.93 -0.41 0.71 16 33 H 0.06 0.95 7.80 -51.93 -0.41 0.54 16 34 H 0.08 1.58 7.46 -51.93 -0.39 1.20 16 35 H 0.06 1.57 6.54 -51.93 -0.34 1.23 16 36 H 0.03 0.90 8.14 -51.93 -0.42 0.48 16 37 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 38 H 0.14 1.98 7.33 -52.48 -0.38 1.60 16 39 H 0.13 1.24 8.06 -52.48 -0.42 0.82 16 40 H 0.13 1.16 8.06 -52.49 -0.42 0.74 16 41 H 0.13 1.68 6.30 -52.49 -0.33 1.35 16 42 H 0.05 0.82 7.33 -51.93 -0.38 0.44 16 43 H 0.05 0.65 7.97 -51.93 -0.41 0.24 16 44 H 0.11 1.86 8.14 -51.92 -0.42 1.44 16 LS Contribution 372.61 15.07 5.62 5.62 Total: -1.00 -31.16 372.61 -9.87 -41.03 By element: Atomic # 1 Polarization: 9.56 SS G_CDS: -6.82 Total: 2.73 kcal Atomic # 6 Polarization: -23.02 SS G_CDS: -1.37 Total: -24.39 kcal Atomic # 7 Polarization: -45.43 SS G_CDS: 0.40 Total: -45.03 kcal Atomic # 8 Polarization: -48.24 SS G_CDS: -2.11 Total: -50.35 kcal Atomic # 14 Polarization: 20.05 SS G_CDS: -5.02 Total: 15.03 kcal Atomic # 16 Polarization: 55.92 SS G_CDS: -0.56 Total: 55.36 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -31.16 -9.87 -41.03 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001259298152.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.262 kcal (2) G-P(sol) polarization free energy of solvation -31.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.031 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds