Wall clock time and date at job start Tue Mar 31 2020 15:06:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.47056 * 2 1 4 4 C 1.53001 * 109.46730 * 179.97438 * 3 2 1 5 5 N 1.46505 * 109.46790 * 179.97438 * 4 3 2 6 6 C 1.46500 * 120.00283 * 85.00326 * 5 4 3 7 7 C 1.50699 * 109.47044 * 65.30038 * 6 5 4 8 8 H 1.07994 * 120.00406 * 4.41961 * 7 6 5 9 9 C 1.37875 * 119.99504 * 184.42922 * 7 6 5 10 10 N 1.31507 * 120.00482 * 2.65668 * 9 7 6 11 11 Si 1.86803 * 119.99876 * 182.65691 * 9 7 6 12 12 H 1.48497 * 109.47125 * 65.11554 * 11 9 7 13 13 H 1.48495 * 109.47352 * 185.12026 * 11 9 7 14 14 H 1.48501 * 109.47094 * 305.11931 * 11 9 7 15 15 S 1.65603 * 119.99660 * 264.99755 * 5 4 3 16 16 O 1.42101 * 106.40274 * 30.72306 * 15 5 4 17 17 O 1.42103 * 106.39656 * 163.64027 * 15 5 4 18 18 C 1.76198 * 107.21837 * 277.17953 * 15 5 4 19 19 C 1.38167 * 120.02956 * 114.40224 * 18 15 5 20 20 C 1.38238 * 120.05881 * 179.97438 * 19 18 15 21 21 C 1.38287 * 120.11405 * 0.02707 * 20 19 18 22 22 C 1.38127 * 120.05325 * 0.02562 * 21 20 19 23 23 C 1.38710 * 120.03061 * 294.12165 * 18 15 5 24 24 O 1.35908 * 120.05376 * 0.02562 * 23 18 15 25 25 C 1.42896 * 116.99704 * 184.78875 * 24 23 18 26 26 H 1.08998 * 109.47229 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47182 * 300.00554 * 1 2 3 28 28 H 1.08996 * 109.46908 * 60.00206 * 1 2 3 29 29 H 1.08993 * 109.47426 * 239.99425 * 2 1 3 30 30 H 1.09009 * 109.46676 * 119.99613 * 2 1 3 31 31 H 1.08997 * 109.47270 * 60.00362 * 3 2 1 32 32 H 1.09001 * 109.46723 * 299.99426 * 3 2 1 33 33 H 1.09001 * 109.47190 * 59.99641 * 4 3 2 34 34 H 1.08996 * 109.47226 * 299.99789 * 4 3 2 35 35 H 1.08995 * 109.47054 * 185.30219 * 6 5 4 36 36 H 1.09005 * 109.46287 * 305.30036 * 6 5 4 37 37 H 0.97004 * 120.00322 * 180.02562 * 10 9 7 38 38 H 1.08004 * 119.96519 * 359.97438 * 19 18 15 39 39 H 1.08005 * 119.94410 * 179.97438 * 20 19 18 40 40 H 1.07993 * 119.97701 * 179.97438 * 21 20 19 41 41 H 1.07992 * 120.02883 * 179.97438 * 22 21 20 42 42 H 1.08999 * 109.47599 * 301.69237 * 25 24 23 43 43 H 1.08998 * 109.47290 * 61.69371 * 25 24 23 44 44 H 1.09008 * 109.47008 * 181.69291 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4424 0.0006 5 7 4.0584 2.8237 0.0000 6 6 4.1978 3.5520 1.2635 7 6 5.2621 2.8971 2.1059 8 1 5.8320 2.0701 1.7091 9 6 5.5080 3.3539 3.3833 10 7 4.7790 4.3262 3.8858 11 14 6.8769 2.5915 4.4004 12 1 8.1866 2.8786 3.7621 13 1 6.8563 3.1674 5.7690 14 1 6.6759 1.1222 4.4787 15 16 4.4529 3.5617 -1.4290 16 8 3.6045 2.9976 -2.4196 17 8 4.5114 4.9555 -1.1579 18 6 6.0933 3.0649 -1.8372 19 6 6.3225 2.2904 -2.9581 20 6 7.6094 1.9007 -3.2792 21 6 8.6704 2.2843 -2.4795 22 6 8.4465 3.0577 -1.3572 23 6 7.1565 3.4559 -1.0366 24 8 6.9343 4.2221 0.0637 25 6 8.0838 4.6748 0.7818 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 1.8934 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8901 31 1 1.6768 1.9563 0.8900 32 1 1.6767 1.9563 -0.8901 33 1 3.9337 0.9284 -0.8891 34 1 3.9330 0.9288 0.8908 35 1 4.4808 4.5844 1.0585 36 1 3.2487 3.5349 1.7993 37 1 4.9523 4.6478 4.7845 38 1 5.4955 1.9892 -3.5840 39 1 7.7864 1.2949 -4.1557 40 1 9.6748 1.9783 -2.7322 41 1 9.2753 3.3566 -0.7327 42 1 8.6701 3.8159 1.1079 43 1 8.6924 5.3050 0.1333 44 1 7.7656 5.2491 1.6520 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001259298152.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:06:47 Heat of formation + Delta-G solvation = -111.600658 kcal Electronic energy + Delta-G solvation = -27708.488321 eV Core-core repulsion = 23945.425428 eV Total energy + Delta-G solvation = -3763.062893 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.09927 -38.55862 -38.16272 -37.88135 -36.81525 -35.41770 -34.13923 -32.39865 -31.10065 -30.20151 -28.26519 -28.16014 -25.05566 -24.26993 -23.48542 -23.11531 -21.90712 -20.13526 -19.24546 -18.42794 -18.37423 -17.82723 -17.49609 -16.83246 -16.61204 -16.25507 -16.06248 -15.83218 -15.40448 -15.23076 -14.92576 -14.65426 -14.23337 -14.10849 -13.78552 -13.62806 -13.49594 -13.36338 -13.08371 -12.97179 -12.90673 -12.78531 -12.71787 -12.49328 -12.39162 -12.35774 -12.09235 -11.99579 -11.84325 -11.79001 -11.56488 -11.40830 -11.28770 -10.49834 -10.39062 -9.65596 -9.31332 -8.05752 -6.14241 -0.44578 -0.09113 0.40686 1.41266 1.44829 1.51934 2.08338 2.34467 2.46801 2.58891 2.86063 3.26125 3.43571 3.85422 3.90694 3.97618 4.09047 4.17708 4.27778 4.32494 4.34272 4.36714 4.38070 4.56778 4.69212 4.75039 4.76554 4.80750 4.85464 5.01165 5.09055 5.15898 5.19276 5.23312 5.31969 5.38379 5.40502 5.45511 5.54561 5.62478 5.78064 5.87428 5.98943 6.26073 6.35303 6.92132 7.50765 9.03467 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.008237 B = 0.007795 C = 0.004848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3398.497520 B = 3591.231736 C = 5774.084025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.117 4.117 3 C -0.137 4.137 4 C 0.130 3.870 5 N -0.984 5.984 6 C 0.267 3.733 7 C -0.501 4.501 8 H 0.060 0.940 9 C 0.015 3.985 10 N -0.932 5.932 11 Si 0.944 3.056 12 H -0.260 1.260 13 H -0.291 1.291 14 H -0.273 1.273 15 S 2.696 3.304 16 O -0.986 6.986 17 O -0.996 6.996 18 C -0.731 4.731 19 C -0.004 4.004 20 C -0.180 4.180 21 C -0.019 4.019 22 C -0.241 4.241 23 C 0.211 3.789 24 O -0.307 6.307 25 C 0.029 3.971 26 H 0.070 0.930 27 H 0.047 0.953 28 H 0.052 0.948 29 H 0.074 0.926 30 H 0.066 0.934 31 H 0.049 0.951 32 H 0.056 0.944 33 H 0.081 0.919 34 H 0.079 0.921 35 H 0.026 0.974 36 H 0.006 0.994 37 H 0.262 0.738 38 H 0.153 0.847 39 H 0.168 0.832 40 H 0.172 0.828 41 H 0.155 0.845 42 H 0.068 0.932 43 H 0.079 0.921 44 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.926 -8.467 -11.367 15.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.155 4.155 3 C -0.177 4.177 4 C 0.004 3.996 5 N -0.822 5.822 6 C 0.144 3.856 7 C -0.541 4.541 8 H 0.078 0.922 9 C -0.183 4.183 10 N -0.573 5.573 11 Si 0.770 3.230 12 H -0.184 1.184 13 H -0.217 1.217 14 H -0.198 1.198 15 S 2.790 3.210 16 O -0.977 6.977 17 O -0.986 6.986 18 C -0.821 4.821 19 C -0.023 4.023 20 C -0.198 4.198 21 C -0.037 4.037 22 C -0.260 4.260 23 C 0.162 3.838 24 O -0.218 6.218 25 C -0.066 4.066 26 H 0.089 0.911 27 H 0.066 0.934 28 H 0.071 0.929 29 H 0.093 0.907 30 H 0.085 0.915 31 H 0.068 0.932 32 H 0.075 0.925 33 H 0.099 0.901 34 H 0.097 0.903 35 H 0.044 0.956 36 H 0.024 0.976 37 H 0.071 0.929 38 H 0.171 0.829 39 H 0.186 0.814 40 H 0.190 0.810 41 H 0.173 0.827 42 H 0.086 0.914 43 H 0.097 0.903 44 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 6.182 -7.702 -11.562 15.206 hybrid contribution 1.176 -0.047 1.290 1.746 sum 7.358 -7.748 -10.273 14.823 Atomic orbital electron populations 1.21755 0.95078 1.02278 1.01576 1.21439 0.96601 0.94725 1.02707 1.22033 0.95554 0.98675 1.01427 1.21267 0.94087 0.81295 1.02925 1.57224 1.78732 1.24088 1.22129 1.18698 0.95924 0.91471 0.79482 1.21387 1.18189 1.16247 0.98228 0.92167 1.25608 0.98486 0.95634 0.98597 1.70072 1.41118 1.29210 1.16888 0.85830 0.80697 0.78715 0.77758 1.18412 1.21711 1.19848 1.01338 0.74451 0.72966 0.72278 1.93467 1.65236 1.79773 1.59175 1.93494 1.87815 1.32374 1.84950 1.30026 1.21750 1.21484 1.08849 1.21081 0.99989 0.89830 0.91385 1.21556 0.91396 1.04011 1.02878 1.21720 1.01098 0.90329 0.90563 1.21687 0.95138 1.06406 1.02806 1.18832 0.93884 0.86683 0.84440 1.86391 1.36190 1.62834 1.36412 1.23227 0.87050 0.99878 0.96402 0.91085 0.93375 0.92853 0.90729 0.91477 0.93170 0.92524 0.90090 0.90262 0.95560 0.97626 0.92943 0.82944 0.81414 0.81027 0.82740 0.91352 0.90280 0.89058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.47 9.91 71.98 0.71 -2.75 16 2 C -0.12 -3.07 5.93 30.60 0.18 -2.88 16 3 C -0.14 -4.72 5.54 30.60 0.17 -4.55 16 4 C 0.13 4.82 5.23 86.38 0.45 5.27 16 5 N -0.98 -43.55 2.88 -519.84 -1.50 -45.04 16 6 C 0.27 14.06 5.03 85.63 0.43 14.50 16 7 C -0.50 -26.16 7.37 25.60 0.19 -25.97 16 8 H 0.06 3.05 7.76 -2.91 -0.02 3.03 16 9 C 0.01 0.80 5.46 84.66 0.46 1.26 16 10 N -0.93 -53.86 13.29 21.45 0.28 -53.58 16 11 Si 0.94 41.15 29.54 68.60 2.03 43.18 16 12 H -0.26 -10.38 7.11 99.48 0.71 -9.67 16 13 H -0.29 -12.79 7.11 99.48 0.71 -12.09 16 14 H -0.27 -11.65 7.11 99.48 0.71 -10.95 16 15 S 2.70 116.36 5.21 -56.49 -0.29 116.06 16 16 O -0.99 -41.28 16.01 -128.00 -2.05 -43.33 16 17 O -1.00 -50.63 15.61 -122.64 -1.91 -52.54 16 18 C -0.73 -26.82 5.92 22.37 0.13 -26.69 16 19 C 0.00 -0.10 9.55 22.25 0.21 0.11 16 20 C -0.18 -3.81 10.04 22.28 0.22 -3.58 16 21 C -0.02 -0.39 10.04 22.25 0.22 -0.17 16 22 C -0.24 -6.45 9.06 22.37 0.20 -6.25 16 23 C 0.21 7.64 6.63 22.51 0.15 7.79 16 24 O -0.31 -12.72 7.21 -82.22 -0.59 -13.32 16 25 C 0.03 0.93 9.84 113.37 1.12 2.04 16 26 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 27 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 28 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 29 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 30 H 0.07 1.70 8.14 -2.38 -0.02 1.68 16 31 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 32 H 0.06 2.01 7.94 -2.39 -0.02 1.99 16 33 H 0.08 2.60 7.80 -2.39 -0.02 2.58 16 34 H 0.08 3.01 7.46 -2.39 -0.02 2.99 16 35 H 0.03 1.55 6.54 -2.39 -0.02 1.53 16 36 H 0.01 0.33 8.14 -2.38 -0.02 0.31 16 37 H 0.26 14.41 8.31 -92.71 -0.77 13.64 16 38 H 0.15 3.93 7.33 -2.91 -0.02 3.90 16 39 H 0.17 2.19 8.06 -2.91 -0.02 2.16 16 40 H 0.17 1.93 8.06 -2.91 -0.02 1.90 16 41 H 0.16 3.33 6.30 -2.91 -0.02 3.31 16 42 H 0.07 1.95 7.33 -2.39 -0.02 1.93 16 43 H 0.08 2.00 7.97 -2.39 -0.02 1.98 16 44 H 0.09 3.21 8.14 -2.38 -0.02 3.19 16 Total: -1.00 -71.57 372.61 1.80 -69.77 By element: Atomic # 1 Polarization: 19.70 SS G_CDS: 0.98 Total: 20.68 kcal Atomic # 6 Polarization: -46.73 SS G_CDS: 4.86 Total: -41.88 kcal Atomic # 7 Polarization: -97.41 SS G_CDS: -1.21 Total: -98.62 kcal Atomic # 8 Polarization: -104.63 SS G_CDS: -4.56 Total: -109.19 kcal Atomic # 14 Polarization: 41.15 SS G_CDS: 2.03 Total: 43.18 kcal Atomic # 16 Polarization: 116.36 SS G_CDS: -0.29 Total: 116.06 kcal Total: -71.57 1.80 -69.77 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001259298152.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.829 kcal (2) G-P(sol) polarization free energy of solvation -71.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.771 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds