Wall clock time and date at job start Tue Mar 31 2020 15:26:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52994 * 109.47213 * 2 1 4 4 C 1.53003 * 109.47213 * 180.02562 * 3 2 1 5 5 O 1.42899 * 109.47433 * 179.97438 * 4 3 2 6 6 C 1.35893 * 117.00392 * 179.97438 * 5 4 3 7 7 C 1.38736 * 120.05957 * 180.02562 * 6 5 4 8 8 C 1.38138 * 119.94337 * 180.30421 * 7 6 5 9 9 C 1.38271 * 120.05803 * 359.41293 * 8 7 6 10 10 S 1.76199 * 119.94634 * 180.30266 * 9 8 7 11 11 O 1.42107 * 106.40105 * 23.84314 * 10 9 8 12 12 O 1.42099 * 106.40478 * 156.76235 * 10 9 8 13 13 N 1.65597 * 107.22072 * 270.30507 * 10 9 8 14 14 C 1.46504 * 120.00240 * 64.99824 * 13 10 9 15 15 C 1.52996 * 109.47347 * 165.00292 * 14 13 10 16 16 C 1.50700 * 109.47050 * 180.02562 * 15 14 13 17 17 H 1.08002 * 120.00024 * 359.97438 * 16 15 14 18 18 C 1.37875 * 119.99918 * 179.97438 * 16 15 14 19 19 N 1.31518 * 120.00164 * 0.02562 * 18 16 15 20 20 Si 1.86808 * 120.00094 * 179.97438 * 18 16 15 21 21 H 1.48497 * 109.46638 * 60.00054 * 20 18 16 22 22 H 1.48498 * 109.47296 * 180.02562 * 20 18 16 23 23 H 1.48502 * 109.47197 * 300.00265 * 20 18 16 24 24 C 1.38259 * 120.10889 * 0.60974 * 9 8 7 25 25 C 1.38146 * 120.05909 * 359.67363 * 24 9 8 26 26 H 1.09002 * 109.46411 * 299.99863 * 1 2 3 27 27 H 1.08993 * 109.47457 * 59.99586 * 1 2 3 28 28 H 1.09003 * 109.47063 * 180.02562 * 1 2 3 29 29 H 1.09007 * 109.47084 * 240.00042 * 2 1 3 30 30 H 1.08998 * 109.47684 * 120.00803 * 2 1 3 31 31 H 1.08994 * 109.47469 * 60.00410 * 3 2 1 32 32 H 1.09001 * 109.47551 * 299.99998 * 3 2 1 33 33 H 1.09002 * 109.47184 * 60.00229 * 4 3 2 34 34 H 1.09001 * 109.46987 * 299.99936 * 4 3 2 35 35 H 1.08002 * 120.02291 * 0.02562 * 7 6 5 36 36 H 1.08004 * 119.96766 * 179.69880 * 8 7 6 37 37 H 0.96998 * 120.00083 * 245.00162 * 13 10 9 38 38 H 1.09000 * 109.47252 * 285.00560 * 14 13 10 39 39 H 1.09006 * 109.46833 * 44.99656 * 14 13 10 40 40 H 1.09004 * 109.47177 * 299.99565 * 15 14 13 41 41 H 1.08995 * 109.47249 * 60.00011 * 15 14 13 42 42 H 0.96999 * 119.99973 * 179.97438 * 19 18 16 43 43 H 1.08006 * 119.97147 * 179.69573 * 24 9 8 44 44 H 1.07993 * 120.03340 * 180.02562 * 25 24 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5701 1.4424 -0.0006 5 8 4.0465 2.7897 -0.0012 6 6 5.3937 2.9677 -0.0013 7 6 5.9253 4.2492 -0.0014 8 6 7.2951 4.4275 -0.0078 9 6 8.1363 3.3301 -0.0019 10 16 9.8831 3.5609 -0.0021 11 8 10.1173 4.8523 0.5427 12 8 10.4448 2.3744 0.5419 13 7 10.3689 3.6257 -1.5839 14 6 9.9254 4.7273 -2.4419 15 6 10.7862 4.7675 -3.7061 16 6 10.3304 5.9010 -4.5884 17 1 9.5085 6.5296 -4.2786 18 6 10.9624 6.1357 -5.7910 19 7 11.9629 5.3700 -6.1685 20 14 10.3969 7.5403 -6.8850 21 1 10.5330 8.8244 -6.1517 22 1 11.2325 7.5795 -8.1120 23 1 8.9754 7.3333 -7.2612 24 6 7.6091 2.0520 -0.0024 25 6 6.2399 1.8683 -0.0018 26 1 -0.3632 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 1.8934 -0.5139 -0.8900 30 1 1.8935 -0.5139 0.8899 31 1 1.6768 1.9563 0.8899 32 1 1.6767 1.9563 -0.8900 33 1 3.9330 0.9288 -0.8909 34 1 3.9337 0.9285 0.8891 35 1 5.2686 5.1067 -0.0009 36 1 7.7093 5.4249 -0.0127 37 1 10.9471 2.9343 -1.9424 38 1 8.8818 4.5756 -2.7176 39 1 10.0256 5.6700 -1.9038 40 1 11.8298 4.9193 -3.4304 41 1 10.6859 3.8249 -4.2441 42 1 12.4073 5.5348 -7.0148 43 1 8.2682 1.1964 -0.0027 44 1 5.8285 0.8698 -0.0017 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001260580524.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:26:51 Heat of formation + Delta-G solvation = -114.092642 kcal Electronic energy + Delta-G solvation = -24867.987772 eV Core-core repulsion = 21104.816819 eV Total energy + Delta-G solvation = -3763.170953 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.47294 -37.92679 -36.97480 -35.60650 -35.54033 -35.35876 -32.73160 -31.43101 -30.77843 -29.36405 -29.11750 -24.75701 -24.47568 -23.21221 -22.39880 -21.49468 -21.12596 -19.29222 -18.58727 -17.67516 -16.98001 -16.82848 -16.48118 -16.19834 -15.40133 -15.21694 -14.94764 -14.59414 -14.32145 -14.16933 -13.89374 -13.79855 -13.64803 -13.39767 -13.17529 -12.68787 -12.54773 -12.41860 -11.86652 -11.82534 -11.72865 -11.66171 -11.63947 -11.45788 -11.28014 -11.13402 -11.10931 -11.03346 -10.82762 -10.63061 -10.43890 -9.57946 -9.29587 -9.27144 -8.92682 -8.75358 -8.40394 -6.07713 -4.11146 0.61282 0.87580 1.11785 2.70732 3.18706 3.30839 3.35355 3.37632 3.52551 4.02771 4.29867 4.34357 4.40953 4.44684 4.50780 4.55667 4.72328 4.74283 4.83265 5.00579 5.08005 5.19777 5.25888 5.27075 5.28971 5.36880 5.41923 5.59696 5.68664 5.72139 5.76472 5.79446 5.80408 5.97833 6.00978 6.20634 6.44780 6.49174 6.73199 7.02425 7.42970 7.56364 7.65879 7.90817 8.28473 8.94460 9.53328 11.03618 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.010966 B = 0.002722 C = 0.002321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2552.738839 B =10284.773379 C =12059.430701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.122 4.122 3 C -0.120 4.120 4 C 0.054 3.946 5 O -0.311 6.311 6 C 0.180 3.820 7 C -0.173 4.173 8 C 0.022 3.978 9 C -0.709 4.709 10 S 2.697 3.303 11 O -0.961 6.961 12 O -0.973 6.973 13 N -1.111 6.111 14 C 0.118 3.882 15 C 0.018 3.982 16 C -0.524 4.524 17 H 0.059 0.941 18 C 0.059 3.941 19 N -0.893 5.893 20 Si 0.896 3.104 21 H -0.275 1.275 22 H -0.287 1.287 23 H -0.276 1.276 24 C 0.022 3.978 25 C -0.233 4.233 26 H 0.056 0.944 27 H 0.056 0.944 28 H 0.057 0.943 29 H 0.066 0.934 30 H 0.065 0.935 31 H 0.074 0.926 32 H 0.075 0.925 33 H 0.066 0.934 34 H 0.065 0.935 35 H 0.140 0.860 36 H 0.149 0.851 37 H 0.416 0.584 38 H 0.052 0.948 39 H 0.069 0.931 40 H 0.026 0.974 41 H 0.024 0.976 42 H 0.263 0.737 43 H 0.142 0.858 44 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.860 -10.675 13.421 25.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.160 4.160 3 C -0.157 4.157 4 C -0.021 4.021 5 O -0.224 6.224 6 C 0.133 3.867 7 C -0.192 4.192 8 C 0.003 3.997 9 C -0.796 4.796 10 S 2.786 3.214 11 O -0.951 6.951 12 O -0.964 6.964 13 N -0.873 5.873 14 C -0.007 4.007 15 C -0.021 4.021 16 C -0.563 4.563 17 H 0.077 0.923 18 C -0.143 4.143 19 N -0.531 5.531 20 Si 0.724 3.276 21 H -0.201 1.201 22 H -0.213 1.213 23 H -0.202 1.202 24 C 0.003 3.997 25 C -0.253 4.253 26 H 0.075 0.925 27 H 0.075 0.925 28 H 0.076 0.924 29 H 0.085 0.915 30 H 0.084 0.916 31 H 0.093 0.907 32 H 0.094 0.906 33 H 0.085 0.915 34 H 0.083 0.917 35 H 0.158 0.842 36 H 0.167 0.833 37 H 0.251 0.749 38 H 0.070 0.930 39 H 0.087 0.913 40 H 0.045 0.955 41 H 0.042 0.958 42 H 0.072 0.928 43 H 0.160 0.840 44 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -18.513 -10.346 14.085 25.459 hybrid contribution -0.703 0.072 -1.240 1.428 sum -19.216 -10.274 12.845 25.295 Atomic orbital electron populations 1.21750 0.95073 1.01962 1.02164 1.21440 0.96548 0.95450 1.02535 1.21594 0.92205 0.97976 1.03968 1.22964 0.95679 0.81544 1.01885 1.86081 1.18974 1.29824 1.87504 1.19263 0.82157 0.94423 0.90816 1.20554 0.95346 0.95045 1.08253 1.20822 0.92198 0.98357 0.88368 1.30983 1.27430 0.99640 1.21523 1.01685 0.73376 0.73471 0.72870 1.93572 1.84020 1.40600 1.76897 1.93545 1.76789 1.48812 1.77211 1.55495 1.63855 1.37184 1.30737 1.21657 0.98811 0.86576 0.93637 1.19279 0.95211 0.97852 0.89743 1.21049 1.17305 1.14414 1.03564 0.92299 1.25005 0.94915 0.96530 0.97869 1.69948 1.22247 1.38638 1.22304 0.86592 0.78616 0.82612 0.79796 1.20071 1.21281 1.20199 1.20696 0.94909 0.95591 0.88503 1.21316 0.94348 0.98306 1.11290 0.92533 0.92452 0.92397 0.91534 0.91627 0.90706 0.90596 0.91533 0.91663 0.84229 0.83299 0.74886 0.92982 0.91277 0.95535 0.95816 0.92783 0.84000 0.84759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.69 9.91 37.16 0.37 -0.32 16 2 C -0.12 -0.59 5.93 -26.73 -0.16 -0.75 16 3 C -0.12 -0.73 5.58 -26.73 -0.15 -0.88 16 4 C 0.05 0.41 4.74 37.16 0.18 0.58 16 5 O -0.31 -3.33 10.14 -19.40 -0.20 -3.52 16 6 C 0.18 2.14 6.69 -39.21 -0.26 1.88 16 7 C -0.17 -2.11 9.99 -39.43 -0.39 -2.51 16 8 C 0.02 0.29 9.51 -39.61 -0.38 -0.09 16 9 C -0.71 -9.90 5.95 -39.56 -0.24 -10.14 16 10 S 2.70 42.36 5.73 -107.50 -0.62 41.74 16 11 O -0.96 -17.60 16.76 -57.17 -0.96 -18.56 16 12 O -0.97 -16.60 17.28 -57.17 -0.99 -17.59 16 13 N -1.11 -18.36 6.00 -10.61 -0.06 -18.42 16 14 C 0.12 2.29 6.16 -4.04 -0.02 2.27 16 15 C 0.02 0.44 5.11 -27.89 -0.14 0.29 16 16 C -0.52 -14.20 9.11 -34.44 -0.31 -14.51 16 17 H 0.06 1.52 7.74 -52.49 -0.41 1.12 16 18 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 19 N -0.89 -26.01 13.29 55.43 0.74 -25.28 16 20 Si 0.90 21.10 29.54 -169.99 -5.02 16.08 16 21 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 22 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 23 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 24 C 0.02 0.28 9.51 -39.61 -0.38 -0.10 16 25 C -0.23 -2.61 9.04 -39.43 -0.36 -2.97 16 26 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 27 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 28 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 29 H 0.07 0.31 8.14 -51.92 -0.42 -0.11 16 30 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.07 0.46 7.66 -51.93 -0.40 0.06 16 34 H 0.07 0.42 7.66 -51.93 -0.40 0.02 16 35 H 0.14 1.44 8.06 -52.49 -0.42 1.02 16 36 H 0.15 1.84 7.62 -52.48 -0.40 1.44 16 37 H 0.42 6.36 8.65 -34.47 -0.30 6.06 16 38 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 39 H 0.07 1.34 7.75 -51.93 -0.40 0.94 16 40 H 0.03 0.69 8.14 -51.93 -0.42 0.26 16 41 H 0.02 0.60 8.14 -51.93 -0.42 0.17 16 42 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 43 H 0.14 1.55 7.61 -52.48 -0.40 1.15 16 44 H 0.13 1.12 6.30 -52.49 -0.33 0.79 16 LS Contribution 381.54 15.07 5.75 5.75 Total: -1.00 -33.43 381.54 -10.52 -43.95 By element: Atomic # 1 Polarization: 8.36 SS G_CDS: -6.82 Total: 1.54 kcal Atomic # 6 Polarization: -23.36 SS G_CDS: -2.34 Total: -25.70 kcal Atomic # 7 Polarization: -44.37 SS G_CDS: 0.67 Total: -43.70 kcal Atomic # 8 Polarization: -37.53 SS G_CDS: -2.14 Total: -39.67 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Atomic # 16 Polarization: 42.36 SS G_CDS: -0.62 Total: 41.74 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -33.43 -10.52 -43.95 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001260580524.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.140 kcal (2) G-P(sol) polarization free energy of solvation -33.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.953 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds