Wall clock time and date at job start Tue Mar 31 2020 15:26:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52994 * 109.47213 * 2 1 4 4 C 1.53003 * 109.47213 * 180.02562 * 3 2 1 5 5 O 1.42899 * 109.47433 * 179.97438 * 4 3 2 6 6 C 1.35893 * 117.00392 * 179.97438 * 5 4 3 7 7 C 1.38736 * 120.05957 * 180.02562 * 6 5 4 8 8 C 1.38138 * 119.94337 * 180.30421 * 7 6 5 9 9 C 1.38271 * 120.05803 * 359.41293 * 8 7 6 10 10 S 1.76199 * 119.94634 * 180.30266 * 9 8 7 11 11 O 1.42107 * 106.40105 * 23.84314 * 10 9 8 12 12 O 1.42099 * 106.40478 * 156.76235 * 10 9 8 13 13 N 1.65597 * 107.22072 * 270.30507 * 10 9 8 14 14 C 1.46504 * 120.00240 * 64.99824 * 13 10 9 15 15 C 1.52996 * 109.47347 * 165.00292 * 14 13 10 16 16 C 1.50700 * 109.47050 * 180.02562 * 15 14 13 17 17 H 1.08002 * 120.00024 * 359.97438 * 16 15 14 18 18 C 1.37875 * 119.99918 * 179.97438 * 16 15 14 19 19 N 1.31518 * 120.00164 * 0.02562 * 18 16 15 20 20 Si 1.86808 * 120.00094 * 179.97438 * 18 16 15 21 21 H 1.48497 * 109.46638 * 60.00054 * 20 18 16 22 22 H 1.48498 * 109.47296 * 180.02562 * 20 18 16 23 23 H 1.48502 * 109.47197 * 300.00265 * 20 18 16 24 24 C 1.38259 * 120.10889 * 0.60974 * 9 8 7 25 25 C 1.38146 * 120.05909 * 359.67363 * 24 9 8 26 26 H 1.09002 * 109.46411 * 299.99863 * 1 2 3 27 27 H 1.08993 * 109.47457 * 59.99586 * 1 2 3 28 28 H 1.09003 * 109.47063 * 180.02562 * 1 2 3 29 29 H 1.09007 * 109.47084 * 240.00042 * 2 1 3 30 30 H 1.08998 * 109.47684 * 120.00803 * 2 1 3 31 31 H 1.08994 * 109.47469 * 60.00410 * 3 2 1 32 32 H 1.09001 * 109.47551 * 299.99998 * 3 2 1 33 33 H 1.09002 * 109.47184 * 60.00229 * 4 3 2 34 34 H 1.09001 * 109.46987 * 299.99936 * 4 3 2 35 35 H 1.08002 * 120.02291 * 0.02562 * 7 6 5 36 36 H 1.08004 * 119.96766 * 179.69880 * 8 7 6 37 37 H 0.96998 * 120.00083 * 245.00162 * 13 10 9 38 38 H 1.09000 * 109.47252 * 285.00560 * 14 13 10 39 39 H 1.09006 * 109.46833 * 44.99656 * 14 13 10 40 40 H 1.09004 * 109.47177 * 299.99565 * 15 14 13 41 41 H 1.08995 * 109.47249 * 60.00011 * 15 14 13 42 42 H 0.96999 * 119.99973 * 179.97438 * 19 18 16 43 43 H 1.08006 * 119.97147 * 179.69573 * 24 9 8 44 44 H 1.07993 * 120.03340 * 180.02562 * 25 24 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5701 1.4424 -0.0006 5 8 4.0465 2.7897 -0.0012 6 6 5.3937 2.9677 -0.0013 7 6 5.9253 4.2492 -0.0014 8 6 7.2951 4.4275 -0.0078 9 6 8.1363 3.3301 -0.0019 10 16 9.8831 3.5609 -0.0021 11 8 10.1173 4.8523 0.5427 12 8 10.4448 2.3744 0.5419 13 7 10.3689 3.6257 -1.5839 14 6 9.9254 4.7273 -2.4419 15 6 10.7862 4.7675 -3.7061 16 6 10.3304 5.9010 -4.5884 17 1 9.5085 6.5296 -4.2786 18 6 10.9624 6.1357 -5.7910 19 7 11.9629 5.3700 -6.1685 20 14 10.3969 7.5403 -6.8850 21 1 10.5330 8.8244 -6.1517 22 1 11.2325 7.5795 -8.1120 23 1 8.9754 7.3333 -7.2612 24 6 7.6091 2.0520 -0.0024 25 6 6.2399 1.8683 -0.0018 26 1 -0.3632 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 1.8934 -0.5139 -0.8900 30 1 1.8935 -0.5139 0.8899 31 1 1.6768 1.9563 0.8899 32 1 1.6767 1.9563 -0.8900 33 1 3.9330 0.9288 -0.8909 34 1 3.9337 0.9285 0.8891 35 1 5.2686 5.1067 -0.0009 36 1 7.7093 5.4249 -0.0127 37 1 10.9471 2.9343 -1.9424 38 1 8.8818 4.5756 -2.7176 39 1 10.0256 5.6700 -1.9038 40 1 11.8298 4.9193 -3.4304 41 1 10.6859 3.8249 -4.2441 42 1 12.4073 5.5348 -7.0148 43 1 8.2682 1.1964 -0.0027 44 1 5.8285 0.8698 -0.0017 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001260580524.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:26:50 Heat of formation + Delta-G solvation = -136.056940 kcal Electronic energy + Delta-G solvation = -24868.940216 eV Core-core repulsion = 21104.816819 eV Total energy + Delta-G solvation = -3764.123397 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.31196 -38.76930 -38.32757 -36.99137 -36.92491 -36.04049 -34.70424 -32.31541 -31.60798 -30.97621 -29.99287 -26.39704 -25.38157 -24.14873 -23.16773 -22.93011 -21.97186 -20.55184 -19.48615 -18.94502 -18.33878 -18.09912 -17.43936 -17.39795 -16.72326 -16.43117 -15.81827 -15.74683 -15.60730 -15.47511 -14.96550 -14.71918 -14.50568 -14.39047 -14.09769 -14.05012 -13.36077 -13.28200 -13.24063 -13.22529 -13.13977 -13.10394 -12.93858 -12.43727 -12.35704 -12.26713 -12.07758 -11.98993 -11.90728 -11.84717 -11.49636 -11.47370 -11.30536 -10.59470 -10.29797 -10.20350 -9.68679 -8.18719 -6.29162 -0.58987 -0.17638 0.19276 1.44638 1.47125 1.54629 1.96792 2.03733 2.41470 2.46429 2.80281 3.16091 3.32208 3.62588 3.73395 3.88244 3.91255 4.09134 4.13534 4.24166 4.25323 4.31756 4.37507 4.46417 4.57710 4.59982 4.80535 4.83166 4.85448 4.87340 4.90173 4.98878 5.01029 5.04057 5.10001 5.22722 5.29990 5.41832 5.52151 5.54361 5.66425 5.83396 6.06261 6.21740 6.25524 6.86458 7.39834 8.93029 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.010966 B = 0.002722 C = 0.002321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2552.738839 B =10284.773379 C =12059.430701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.119 4.119 3 C -0.116 4.116 4 C 0.045 3.955 5 O -0.319 6.319 6 C 0.179 3.821 7 C -0.180 4.180 8 C 0.009 3.991 9 C -0.718 4.718 10 S 2.716 3.284 11 O -0.990 6.990 12 O -0.987 6.987 13 N -1.112 6.112 14 C 0.133 3.867 15 C 0.019 3.981 16 C -0.543 4.543 17 H 0.068 0.932 18 C 0.001 3.999 19 N -0.931 5.931 20 Si 0.964 3.036 21 H -0.268 1.268 22 H -0.286 1.286 23 H -0.265 1.265 24 C 0.014 3.986 25 C -0.230 4.230 26 H 0.056 0.944 27 H 0.054 0.946 28 H 0.063 0.937 29 H 0.069 0.931 30 H 0.072 0.928 31 H 0.073 0.927 32 H 0.069 0.931 33 H 0.075 0.925 34 H 0.079 0.921 35 H 0.155 0.845 36 H 0.152 0.848 37 H 0.421 0.579 38 H 0.068 0.932 39 H 0.068 0.932 40 H 0.001 0.999 41 H 0.008 0.992 42 H 0.264 0.736 43 H 0.156 0.844 44 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.072 -11.098 13.648 27.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.157 4.157 3 C -0.154 4.154 4 C -0.029 4.029 5 O -0.232 6.232 6 C 0.132 3.868 7 C -0.200 4.200 8 C -0.011 4.011 9 C -0.808 4.808 10 S 2.809 3.191 11 O -0.980 6.980 12 O -0.977 6.977 13 N -0.873 5.873 14 C 0.007 3.993 15 C -0.019 4.019 16 C -0.582 4.582 17 H 0.087 0.913 18 C -0.197 4.197 19 N -0.570 5.570 20 Si 0.789 3.211 21 H -0.193 1.193 22 H -0.212 1.212 23 H -0.190 1.190 24 C -0.006 4.006 25 C -0.249 4.249 26 H 0.075 0.925 27 H 0.073 0.927 28 H 0.082 0.918 29 H 0.088 0.912 30 H 0.091 0.909 31 H 0.091 0.909 32 H 0.088 0.912 33 H 0.094 0.906 34 H 0.097 0.903 35 H 0.173 0.827 36 H 0.170 0.830 37 H 0.256 0.744 38 H 0.086 0.914 39 H 0.087 0.913 40 H 0.019 0.981 41 H 0.026 0.974 42 H 0.072 0.928 43 H 0.173 0.827 44 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -20.700 -10.773 14.322 27.380 hybrid contribution -0.131 0.118 -1.253 1.266 sum -20.831 -10.655 13.069 26.800 Atomic orbital electron populations 1.21765 0.94945 1.02321 1.02080 1.21431 0.96631 0.94563 1.03060 1.21588 0.91357 0.98808 1.03621 1.23261 0.96403 0.80270 1.02993 1.86088 1.18199 1.31874 1.87047 1.19420 0.82903 0.94508 0.89948 1.20764 0.95103 0.96117 1.07975 1.20952 0.92819 0.98392 0.88904 1.30569 1.25486 1.00827 1.23947 1.00844 0.73919 0.72426 0.71907 1.93529 1.85109 1.42041 1.77331 1.93520 1.77873 1.49106 1.77203 1.55363 1.64550 1.36672 1.30692 1.21307 0.98557 0.87578 0.91830 1.19160 0.94668 0.96467 0.91640 1.21546 1.17442 1.15079 1.04086 0.91335 1.25935 0.95001 0.99192 0.99563 1.70081 1.23573 1.40518 1.22867 0.85508 0.78512 0.79383 0.77692 1.19253 1.21178 1.19000 1.20960 0.95939 0.95355 0.88299 1.21617 0.93641 0.99640 1.09999 0.92506 0.92701 0.91835 0.91186 0.90919 0.90874 0.91181 0.90628 0.90257 0.82715 0.83029 0.74365 0.91368 0.91338 0.98079 0.97354 0.92774 0.82654 0.81810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.14 9.91 71.98 0.71 -0.42 16 2 C -0.12 -0.90 5.93 30.59 0.18 -0.71 16 3 C -0.12 -1.19 5.58 30.59 0.17 -1.02 16 4 C 0.04 0.55 4.74 71.98 0.34 0.90 16 5 O -0.32 -6.10 10.14 -92.34 -0.94 -7.03 16 6 C 0.18 3.87 6.69 22.51 0.15 4.02 16 7 C -0.18 -4.12 9.99 22.37 0.22 -3.90 16 8 C 0.01 0.22 9.51 22.25 0.21 0.43 16 9 C -0.72 -19.32 5.95 22.28 0.13 -19.18 16 10 S 2.72 84.67 5.73 -56.49 -0.32 84.35 16 11 O -0.99 -36.40 16.76 -128.00 -2.14 -38.54 16 12 O -0.99 -33.20 17.28 -128.00 -2.21 -35.41 16 13 N -1.11 -36.80 6.00 -187.48 -1.12 -37.93 16 14 C 0.13 5.16 6.16 86.38 0.53 5.69 16 15 C 0.02 0.96 5.11 29.85 0.15 1.12 16 16 C -0.54 -29.47 9.11 25.60 0.23 -29.24 16 17 H 0.07 3.50 7.74 -2.91 -0.02 3.47 16 18 C 0.00 0.08 5.46 84.65 0.46 0.54 16 19 N -0.93 -55.04 13.29 21.45 0.28 -54.76 16 20 Si 0.96 43.03 29.54 68.60 2.03 45.06 16 21 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 22 H -0.29 -12.62 7.11 99.48 0.71 -11.91 16 23 H -0.27 -11.27 7.11 99.48 0.71 -10.57 16 24 C 0.01 0.32 9.51 22.25 0.21 0.53 16 25 C -0.23 -4.54 9.04 22.37 0.20 -4.33 16 26 H 0.06 0.41 8.14 -2.39 -0.02 0.39 16 27 H 0.05 0.43 8.14 -2.39 -0.02 0.41 16 28 H 0.06 0.40 8.14 -2.39 -0.02 0.38 16 29 H 0.07 0.49 8.14 -2.38 -0.02 0.47 16 30 H 0.07 0.46 8.14 -2.39 -0.02 0.44 16 31 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 32 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 33 H 0.08 0.81 7.66 -2.39 -0.02 0.80 16 34 H 0.08 0.77 7.66 -2.39 -0.02 0.75 16 35 H 0.16 2.94 8.06 -2.91 -0.02 2.91 16 36 H 0.15 3.67 7.62 -2.91 -0.02 3.65 16 37 H 0.42 13.03 8.65 -96.75 -0.84 12.19 16 38 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 39 H 0.07 2.66 7.75 -2.38 -0.02 2.64 16 40 H 0.00 0.04 8.14 -2.38 -0.02 0.02 16 41 H 0.01 0.42 8.14 -2.39 -0.02 0.40 16 42 H 0.26 14.75 8.31 -92.71 -0.77 13.98 16 43 H 0.16 3.08 7.61 -2.91 -0.02 3.06 16 44 H 0.16 2.15 6.30 -2.91 -0.02 2.13 16 Total: -1.00 -70.74 381.54 -0.35 -71.09 By element: Atomic # 1 Polarization: 18.60 SS G_CDS: 0.15 Total: 18.75 kcal Atomic # 6 Polarization: -49.50 SS G_CDS: 3.92 Total: -45.58 kcal Atomic # 7 Polarization: -91.85 SS G_CDS: -0.84 Total: -92.69 kcal Atomic # 8 Polarization: -75.69 SS G_CDS: -5.29 Total: -80.98 kcal Atomic # 14 Polarization: 43.03 SS G_CDS: 2.03 Total: 45.06 kcal Atomic # 16 Polarization: 84.67 SS G_CDS: -0.32 Total: 84.35 kcal Total: -70.74 -0.35 -71.09 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001260580524.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.962 kcal (2) G-P(sol) polarization free energy of solvation -70.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.095 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds