Wall clock time and date at job start Tue Mar 31 2020 15:49:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53003 * 109.46846 * 2 1 4 4 N 1.46490 * 109.47171 * 179.97438 * 3 2 1 5 5 C 1.46501 * 120.00207 * 275.00109 * 4 3 2 6 6 C 1.50704 * 109.46802 * 274.99902 * 5 4 3 7 7 H 1.07996 * 120.00055 * 359.97438 * 6 5 4 8 8 C 1.37877 * 120.00086 * 179.97438 * 6 5 4 9 9 N 1.31523 * 119.99861 * 359.97438 * 8 6 5 10 10 Si 1.86803 * 120.00355 * 180.02562 * 8 6 5 11 11 H 1.48495 * 109.47167 * 89.99916 * 10 8 6 12 12 H 1.48499 * 109.47038 * 210.00271 * 10 8 6 13 13 H 1.48502 * 109.46650 * 329.99713 * 10 8 6 14 14 S 1.65605 * 120.00048 * 94.99822 * 4 3 2 15 15 O 1.42108 * 106.40193 * 156.46063 * 14 4 3 16 16 O 1.42092 * 106.40345 * 23.53868 * 14 4 3 17 17 C 1.76200 * 107.21785 * 269.99962 * 14 4 3 18 18 C 1.38281 * 119.94406 * 90.00059 * 17 14 4 19 19 C 1.38130 * 120.05819 * 180.02562 * 18 17 14 20 20 C 1.38757 * 119.94053 * 359.97438 * 19 18 17 21 21 O 1.35896 * 120.05265 * 180.02562 * 20 19 18 22 22 C 1.42905 * 117.00039 * 359.97438 * 21 20 19 23 23 C 1.38709 * 119.88984 * 0.27738 * 20 19 18 24 24 C 1.50701 * 120.02948 * 179.72382 * 23 20 19 25 25 C 1.38166 * 119.94120 * 359.49101 * 23 20 19 26 26 H 1.09004 * 109.46692 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47338 * 300.00049 * 1 2 3 28 28 H 1.09002 * 109.46884 * 60.00892 * 1 2 3 29 29 H 1.08998 * 109.47338 * 239.99951 * 2 1 3 30 30 H 1.09002 * 109.46884 * 119.99108 * 2 1 3 31 31 H 1.09004 * 109.47422 * 59.99500 * 3 2 1 32 32 H 1.09007 * 109.46899 * 299.99645 * 3 2 1 33 33 H 1.08994 * 109.47284 * 34.99280 * 5 4 3 34 34 H 1.08994 * 109.47715 * 155.00149 * 5 4 3 35 35 H 0.96997 * 119.99842 * 180.02562 * 9 8 6 36 36 H 1.07996 * 119.97385 * 0.02562 * 18 17 14 37 37 H 1.07997 * 120.02883 * 179.97438 * 19 18 17 38 38 H 1.09001 * 109.47103 * 179.97438 * 22 21 20 39 39 H 1.09000 * 109.47187 * 300.00222 * 22 21 20 40 40 H 1.09001 * 109.46558 * 60.00270 * 22 21 20 41 41 H 1.08999 * 109.46852 * 89.99583 * 24 23 20 42 42 H 1.08994 * 109.46996 * 210.00468 * 24 23 20 43 43 H 1.08996 * 109.46797 * 330.00359 * 24 23 20 44 44 H 1.08009 * 119.97198 * 180.23071 * 25 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5049 1.4426 0.0006 5 6 4.2369 1.3323 1.2648 6 6 4.3805 2.6991 1.8831 7 1 3.9681 3.5636 1.3840 8 6 5.0383 2.8461 3.0858 9 7 5.5401 1.7933 3.6939 10 14 5.2157 4.5403 3.8526 11 1 4.0544 4.8065 4.7389 12 1 6.4684 4.5948 4.6481 13 1 5.2654 5.5662 2.7800 14 16 4.3335 1.5674 -1.4278 15 8 5.6163 2.0858 -1.1035 16 8 3.4523 2.1943 -2.3495 17 6 4.5947 -0.0699 -2.0240 18 6 3.6595 -0.6593 -2.8549 19 6 3.8616 -1.9430 -3.3232 20 6 5.0044 -2.6409 -2.9597 21 8 5.2058 -3.9037 -3.4196 22 6 4.1992 -4.4515 -4.2734 23 6 5.9384 -2.0494 -2.1219 24 6 7.1777 -2.8069 -1.7201 25 6 5.7339 -0.7634 -1.6601 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5137 -0.8901 29 1 1.8934 -0.5138 -0.8899 30 1 1.8933 -0.5137 0.8901 31 1 1.6766 1.9565 0.8900 32 1 1.6766 1.9563 -0.8901 33 1 3.6893 0.6812 1.9461 34 1 5.2253 0.9129 1.0771 35 1 6.0025 1.8967 4.5402 36 1 2.7704 -0.1155 -3.1379 37 1 3.1308 -2.4030 -3.9718 38 1 4.4833 -5.4617 -4.5683 39 1 3.2484 -4.4817 -3.7412 40 1 4.0986 -3.8287 -5.1622 41 1 7.9718 -2.6131 -2.4412 42 1 7.4979 -2.4809 -0.7306 43 1 6.9597 -3.8746 -1.6980 44 1 6.4626 -0.3010 -1.0107 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001260636227.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:49:28 Heat of formation + Delta-G solvation = -96.468462 kcal Electronic energy + Delta-G solvation = -26865.893295 eV Core-core repulsion = 23103.486583 eV Total energy + Delta-G solvation = -3762.406712 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.38928 -37.60393 -36.68772 -36.30868 -35.13615 -33.15807 -32.92656 -31.77218 -30.42863 -27.87884 -27.38571 -26.79184 -25.02004 -22.68213 -22.47635 -21.92068 -20.97688 -18.24162 -18.20346 -17.18014 -16.65733 -16.61554 -16.18014 -16.04494 -15.40140 -14.66718 -14.44917 -14.41961 -14.04385 -13.69524 -13.59029 -13.48986 -13.18684 -13.02686 -12.48435 -12.34390 -12.26753 -12.10444 -11.97266 -11.79145 -11.60114 -11.44684 -11.38426 -11.29749 -11.11225 -10.99520 -10.95829 -10.75122 -10.53345 -10.35881 -10.27051 -9.92704 -9.69683 -8.95690 -8.48300 -8.40850 -8.02002 -6.03993 -4.07648 0.87267 1.17004 1.26336 2.98545 3.33586 3.36819 3.40184 3.46395 3.82064 4.40172 4.48391 4.54213 4.63804 4.77720 4.85399 4.99265 5.15333 5.23136 5.25957 5.29046 5.31555 5.34815 5.45293 5.50056 5.57344 5.68782 5.73941 5.83779 5.98913 6.04391 6.10877 6.16541 6.17822 6.21919 6.27459 6.30400 6.63539 6.65219 6.68650 7.13659 7.25738 7.41953 7.62700 7.93628 8.22636 8.94738 9.57359 11.04547 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.014012 B = 0.004272 C = 0.003839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1997.824240 B = 6553.307022 C = 7291.123674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.148 4.148 3 C 0.121 3.879 4 N -0.981 5.981 5 C 0.257 3.743 6 C -0.527 4.527 7 H 0.061 0.939 8 C 0.063 3.937 9 N -0.896 5.896 10 Si 0.896 3.104 11 H -0.281 1.281 12 H -0.285 1.285 13 H -0.272 1.272 14 S 2.687 3.313 15 O -0.943 6.943 16 O -0.979 6.979 17 C -0.703 4.703 18 C 0.012 3.988 19 C -0.229 4.229 20 C 0.169 3.831 21 O -0.311 6.311 22 C 0.024 3.976 23 C -0.137 4.137 24 C -0.105 4.105 25 C 0.020 3.980 26 H 0.050 0.950 27 H 0.057 0.943 28 H 0.053 0.947 29 H 0.055 0.945 30 H 0.070 0.930 31 H 0.088 0.912 32 H 0.078 0.922 33 H 0.037 0.963 34 H 0.038 0.962 35 H 0.263 0.737 36 H 0.139 0.861 37 H 0.133 0.867 38 H 0.101 0.899 39 H 0.058 0.942 40 H 0.057 0.943 41 H 0.068 0.932 42 H 0.072 0.928 43 H 0.069 0.931 44 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.336 -12.502 -13.160 18.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.187 4.187 3 C -0.005 4.005 4 N -0.819 5.819 5 C 0.135 3.865 6 C -0.567 4.567 7 H 0.079 0.921 8 C -0.139 4.139 9 N -0.535 5.535 10 Si 0.723 3.277 11 H -0.207 1.207 12 H -0.211 1.211 13 H -0.197 1.197 14 S 2.775 3.225 15 O -0.934 6.934 16 O -0.969 6.969 17 C -0.787 4.787 18 C -0.008 4.008 19 C -0.248 4.248 20 C 0.123 3.877 21 O -0.224 6.224 22 C -0.071 4.071 23 C -0.139 4.139 24 C -0.162 4.162 25 C 0.001 3.999 26 H 0.069 0.931 27 H 0.076 0.924 28 H 0.072 0.928 29 H 0.073 0.927 30 H 0.089 0.911 31 H 0.106 0.894 32 H 0.096 0.904 33 H 0.055 0.945 34 H 0.056 0.944 35 H 0.073 0.927 36 H 0.157 0.843 37 H 0.151 0.849 38 H 0.119 0.881 39 H 0.076 0.924 40 H 0.076 0.924 41 H 0.087 0.913 42 H 0.091 0.909 43 H 0.088 0.912 44 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -4.781 -11.958 -13.362 18.558 hybrid contribution -0.215 -0.003 0.373 0.430 sum -4.996 -11.961 -12.989 18.350 Atomic orbital electron populations 1.21692 0.95711 1.01241 1.01926 1.22052 0.95710 0.98553 1.02416 1.21284 0.79717 0.95732 1.03811 1.57416 1.13845 1.88406 1.22266 1.19086 0.91041 0.97699 0.78696 1.21492 1.36061 0.93651 1.05461 0.92059 1.24915 0.95119 0.97021 0.96876 1.69921 1.37452 1.28996 1.17124 0.86529 0.77490 0.84427 0.79223 1.20672 1.21098 1.19658 1.02134 0.73739 0.73862 0.72756 1.93597 1.40117 1.76290 1.83353 1.93480 1.66596 1.73483 1.63338 1.31359 1.04135 1.28228 1.14994 1.20641 0.96376 0.93216 0.90527 1.21253 0.99072 0.97139 1.07351 1.19053 0.93250 0.83471 0.91937 1.86083 1.46591 1.26884 1.62811 1.23114 0.91392 0.99340 0.93209 1.19369 0.98008 0.95447 1.01070 1.20629 0.93931 0.99780 1.01857 1.20781 0.94169 0.91607 0.93338 0.93092 0.92390 0.92795 0.92667 0.91114 0.89404 0.90365 0.94493 0.94372 0.92729 0.84319 0.84906 0.88106 0.92374 0.92437 0.91304 0.90910 0.91207 0.83313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.73 9.91 37.16 0.37 -1.36 16 2 C -0.15 -2.14 6.26 -26.73 -0.17 -2.31 16 3 C 0.12 2.09 5.68 -4.05 -0.02 2.06 16 4 N -0.98 -20.19 2.77 -115.67 -0.32 -20.51 16 5 C 0.26 6.31 5.10 -5.19 -0.03 6.28 16 6 C -0.53 -14.58 9.38 -34.44 -0.32 -14.91 16 7 H 0.06 1.70 7.81 -52.49 -0.41 1.29 16 8 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 9 N -0.90 -25.82 13.29 55.43 0.74 -25.08 16 10 Si 0.90 21.69 29.54 -169.99 -5.02 16.66 16 11 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 12 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 13 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 14 S 2.69 54.34 5.65 -107.50 -0.61 53.73 16 15 O -0.94 -22.45 16.25 -57.17 -0.93 -23.38 16 16 O -0.98 -20.16 15.83 -57.17 -0.91 -21.07 16 17 C -0.70 -11.92 5.97 -39.56 -0.24 -12.15 16 18 C 0.01 0.17 8.41 -39.61 -0.33 -0.17 16 19 C -0.23 -2.87 9.04 -39.43 -0.36 -3.22 16 20 C 0.17 2.25 6.66 -39.22 -0.26 1.99 16 21 O -0.31 -3.54 9.54 -19.41 -0.19 -3.72 16 22 C 0.02 0.17 9.81 101.05 0.99 1.17 16 23 C -0.14 -1.99 5.89 -104.47 -0.62 -2.61 16 24 C -0.11 -1.27 9.79 36.01 0.35 -0.92 16 25 C 0.02 0.33 9.17 -39.60 -0.36 -0.03 16 26 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 29 H 0.05 0.76 7.00 -51.93 -0.36 0.39 16 30 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 31 H 0.09 1.55 8.11 -51.93 -0.42 1.13 16 32 H 0.08 1.27 6.92 -51.93 -0.36 0.91 16 33 H 0.04 0.92 8.11 -51.93 -0.42 0.50 16 34 H 0.04 0.99 7.61 -51.93 -0.40 0.59 16 35 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 36 H 0.14 1.80 7.61 -52.49 -0.40 1.40 16 37 H 0.13 1.23 6.30 -52.49 -0.33 0.90 16 38 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.06 0.37 7.66 -51.93 -0.40 -0.03 16 40 H 0.06 0.36 7.66 -51.93 -0.40 -0.04 16 41 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 42 H 0.07 0.85 8.09 -51.93 -0.42 0.43 16 43 H 0.07 0.78 7.53 -51.93 -0.39 0.39 16 44 H 0.15 2.48 7.61 -52.48 -0.40 2.08 16 LS Contribution 375.91 15.07 5.66 5.66 Total: -1.00 -33.24 375.91 -9.43 -42.67 By element: Atomic # 1 Polarization: 6.31 SS G_CDS: -6.78 Total: -0.47 kcal Atomic # 6 Polarization: -23.42 SS G_CDS: -1.09 Total: -24.51 kcal Atomic # 7 Polarization: -46.01 SS G_CDS: 0.42 Total: -45.59 kcal Atomic # 8 Polarization: -46.15 SS G_CDS: -2.02 Total: -48.17 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.66 kcal Atomic # 16 Polarization: 54.34 SS G_CDS: -0.61 Total: 53.73 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -33.24 -9.43 -42.67 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001260636227.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.794 kcal (2) G-P(sol) polarization free energy of solvation -33.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.675 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds