Wall clock time and date at job start Tue Mar 31 2020 15:49:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53003 * 109.46846 * 2 1 4 4 N 1.46490 * 109.47171 * 179.97438 * 3 2 1 5 5 C 1.46501 * 120.00207 * 275.00109 * 4 3 2 6 6 C 1.50704 * 109.46802 * 274.99902 * 5 4 3 7 7 H 1.07996 * 120.00055 * 359.97438 * 6 5 4 8 8 C 1.37877 * 120.00086 * 179.97438 * 6 5 4 9 9 N 1.31523 * 119.99861 * 359.97438 * 8 6 5 10 10 Si 1.86803 * 120.00355 * 180.02562 * 8 6 5 11 11 H 1.48495 * 109.47167 * 89.99916 * 10 8 6 12 12 H 1.48499 * 109.47038 * 210.00271 * 10 8 6 13 13 H 1.48502 * 109.46650 * 329.99713 * 10 8 6 14 14 S 1.65605 * 120.00048 * 94.99822 * 4 3 2 15 15 O 1.42108 * 106.40193 * 156.46063 * 14 4 3 16 16 O 1.42092 * 106.40345 * 23.53868 * 14 4 3 17 17 C 1.76200 * 107.21785 * 269.99962 * 14 4 3 18 18 C 1.38281 * 119.94406 * 90.00059 * 17 14 4 19 19 C 1.38130 * 120.05819 * 180.02562 * 18 17 14 20 20 C 1.38757 * 119.94053 * 359.97438 * 19 18 17 21 21 O 1.35896 * 120.05265 * 180.02562 * 20 19 18 22 22 C 1.42905 * 117.00039 * 359.97438 * 21 20 19 23 23 C 1.38709 * 119.88984 * 0.27738 * 20 19 18 24 24 C 1.50701 * 120.02948 * 179.72382 * 23 20 19 25 25 C 1.38166 * 119.94120 * 359.49101 * 23 20 19 26 26 H 1.09004 * 109.46692 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47338 * 300.00049 * 1 2 3 28 28 H 1.09002 * 109.46884 * 60.00892 * 1 2 3 29 29 H 1.08998 * 109.47338 * 239.99951 * 2 1 3 30 30 H 1.09002 * 109.46884 * 119.99108 * 2 1 3 31 31 H 1.09004 * 109.47422 * 59.99500 * 3 2 1 32 32 H 1.09007 * 109.46899 * 299.99645 * 3 2 1 33 33 H 1.08994 * 109.47284 * 34.99280 * 5 4 3 34 34 H 1.08994 * 109.47715 * 155.00149 * 5 4 3 35 35 H 0.96997 * 119.99842 * 180.02562 * 9 8 6 36 36 H 1.07996 * 119.97385 * 0.02562 * 18 17 14 37 37 H 1.07997 * 120.02883 * 179.97438 * 19 18 17 38 38 H 1.09001 * 109.47103 * 179.97438 * 22 21 20 39 39 H 1.09000 * 109.47187 * 300.00222 * 22 21 20 40 40 H 1.09001 * 109.46558 * 60.00270 * 22 21 20 41 41 H 1.08999 * 109.46852 * 89.99583 * 24 23 20 42 42 H 1.08994 * 109.46996 * 210.00468 * 24 23 20 43 43 H 1.08996 * 109.46797 * 330.00359 * 24 23 20 44 44 H 1.08009 * 119.97198 * 180.23071 * 25 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5049 1.4426 0.0006 5 6 4.2369 1.3323 1.2648 6 6 4.3805 2.6991 1.8831 7 1 3.9681 3.5636 1.3840 8 6 5.0383 2.8461 3.0858 9 7 5.5401 1.7933 3.6939 10 14 5.2157 4.5403 3.8526 11 1 4.0544 4.8065 4.7389 12 1 6.4684 4.5948 4.6481 13 1 5.2654 5.5662 2.7800 14 16 4.3335 1.5674 -1.4278 15 8 5.6163 2.0858 -1.1035 16 8 3.4523 2.1943 -2.3495 17 6 4.5947 -0.0699 -2.0240 18 6 3.6595 -0.6593 -2.8549 19 6 3.8616 -1.9430 -3.3232 20 6 5.0044 -2.6409 -2.9597 21 8 5.2058 -3.9037 -3.4196 22 6 4.1992 -4.4515 -4.2734 23 6 5.9384 -2.0494 -2.1219 24 6 7.1777 -2.8069 -1.7201 25 6 5.7339 -0.7634 -1.6601 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5137 -0.8901 29 1 1.8934 -0.5138 -0.8899 30 1 1.8933 -0.5137 0.8901 31 1 1.6766 1.9565 0.8900 32 1 1.6766 1.9563 -0.8901 33 1 3.6893 0.6812 1.9461 34 1 5.2253 0.9129 1.0771 35 1 6.0025 1.8967 4.5402 36 1 2.7704 -0.1155 -3.1379 37 1 3.1308 -2.4030 -3.9718 38 1 4.4833 -5.4617 -4.5683 39 1 3.2484 -4.4817 -3.7412 40 1 4.0986 -3.8287 -5.1622 41 1 7.9718 -2.6131 -2.4412 42 1 7.4979 -2.4809 -0.7306 43 1 6.9597 -3.8746 -1.6980 44 1 6.4626 -0.3010 -1.0107 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001260636227.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:49:27 Heat of formation + Delta-G solvation = -118.004730 kcal Electronic energy + Delta-G solvation = -26866.827178 eV Core-core repulsion = 23103.486583 eV Total energy + Delta-G solvation = -3763.340594 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.37673 -38.60248 -38.32730 -37.90423 -36.83845 -34.97553 -34.00660 -33.36721 -31.52900 -29.23167 -28.56596 -27.81140 -26.54024 -24.38601 -23.75184 -23.00162 -22.24955 -19.79676 -19.17629 -18.79851 -18.37021 -17.99814 -17.71229 -17.01372 -16.82700 -16.28800 -15.76273 -15.58904 -15.26052 -15.07779 -14.82146 -14.59536 -14.29292 -14.27801 -14.16384 -13.81886 -13.38198 -13.23778 -13.15964 -13.12006 -13.09342 -12.99424 -12.82598 -12.79202 -12.47447 -12.37895 -12.28296 -12.13550 -12.05614 -11.97024 -11.76159 -11.64752 -11.40148 -10.56968 -10.06078 -9.77208 -9.49834 -8.18073 -6.29627 -0.54358 -0.16423 0.15541 1.40056 1.42548 1.53180 2.03210 2.16848 2.41855 2.46111 2.87305 3.12851 3.31568 3.61853 3.71194 3.95837 4.09868 4.11341 4.19707 4.32847 4.35547 4.39293 4.42180 4.48502 4.51719 4.71413 4.75837 4.77131 4.82700 4.92115 4.95566 5.02408 5.05514 5.14309 5.18617 5.22931 5.27500 5.30153 5.48314 5.54813 5.57277 5.73399 5.95232 6.12706 6.22473 6.78248 7.38844 8.89530 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.014012 B = 0.004272 C = 0.003839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1997.824240 B = 6553.307022 C = 7291.123674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.142 4.142 3 C 0.113 3.887 4 N -0.987 5.987 5 C 0.274 3.726 6 C -0.548 4.548 7 H 0.053 0.947 8 C 0.014 3.986 9 N -0.924 5.924 10 Si 0.955 3.045 11 H -0.266 1.266 12 H -0.279 1.279 13 H -0.274 1.274 14 S 2.691 3.309 15 O -0.992 6.992 16 O -0.987 6.987 17 C -0.711 4.711 18 C 0.008 3.992 19 C -0.217 4.217 20 C 0.177 3.823 21 O -0.317 6.317 22 C 0.010 3.990 23 C -0.148 4.148 24 C -0.104 4.104 25 C -0.002 4.002 26 H 0.069 0.931 27 H 0.056 0.944 28 H 0.067 0.933 29 H 0.065 0.935 30 H 0.054 0.946 31 H 0.077 0.923 32 H 0.090 0.910 33 H 0.029 0.971 34 H 0.016 0.984 35 H 0.267 0.733 36 H 0.156 0.844 37 H 0.174 0.826 38 H 0.125 0.875 39 H 0.070 0.930 40 H 0.071 0.929 41 H 0.080 0.920 42 H 0.068 0.932 43 H 0.081 0.919 44 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.946 -14.301 -14.790 21.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.181 4.181 3 C -0.012 4.012 4 N -0.825 5.825 5 C 0.150 3.850 6 C -0.587 4.587 7 H 0.071 0.929 8 C -0.186 4.186 9 N -0.563 5.563 10 Si 0.780 3.220 11 H -0.191 1.191 12 H -0.204 1.204 13 H -0.199 1.199 14 S 2.785 3.215 15 O -0.983 6.983 16 O -0.978 6.978 17 C -0.801 4.801 18 C -0.012 4.012 19 C -0.236 4.236 20 C 0.130 3.870 21 O -0.229 6.229 22 C -0.083 4.083 23 C -0.149 4.149 24 C -0.161 4.161 25 C -0.021 4.021 26 H 0.088 0.912 27 H 0.075 0.925 28 H 0.086 0.914 29 H 0.084 0.916 30 H 0.073 0.927 31 H 0.096 0.904 32 H 0.108 0.892 33 H 0.047 0.953 34 H 0.034 0.966 35 H 0.076 0.924 36 H 0.173 0.827 37 H 0.191 0.809 38 H 0.143 0.857 39 H 0.089 0.911 40 H 0.090 0.910 41 H 0.098 0.902 42 H 0.087 0.913 43 H 0.100 0.900 44 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -6.429 -13.717 -14.983 21.307 hybrid contribution 0.276 0.369 0.732 0.865 sum -6.153 -13.348 -14.251 20.472 Atomic orbital electron populations 1.21677 0.93164 1.02679 1.02586 1.21989 0.97813 0.96167 1.02164 1.21536 0.77817 0.98016 1.03864 1.57277 1.15178 1.89055 1.20997 1.18607 0.90332 0.95996 0.80038 1.21827 1.36226 0.94666 1.05972 0.92883 1.25716 0.94777 1.00682 0.97389 1.70014 1.37961 1.30814 1.17552 0.85599 0.78099 0.79894 0.78402 1.19069 1.20398 1.19904 1.01510 0.72578 0.74951 0.72414 1.93529 1.42230 1.78465 1.84041 1.93450 1.66475 1.74763 1.63069 1.30656 1.05849 1.26210 1.17335 1.20897 0.96186 0.94222 0.89848 1.21622 0.99351 0.95975 1.06698 1.19145 0.92737 0.84326 0.90800 1.86096 1.48227 1.25503 1.63103 1.23530 0.91091 1.00626 0.93101 1.19574 0.99299 0.94757 1.01302 1.20671 0.93398 1.00069 1.01966 1.20723 0.94175 0.92907 0.94323 0.91243 0.92504 0.91434 0.91635 0.92679 0.90410 0.89188 0.95338 0.96564 0.92413 0.82683 0.80854 0.85693 0.91094 0.91049 0.90168 0.91320 0.90032 0.85130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.04 9.91 71.98 0.71 -2.33 16 2 C -0.14 -4.01 6.26 30.60 0.19 -3.81 16 3 C 0.11 3.94 5.68 86.38 0.49 4.43 16 4 N -0.99 -42.29 2.77 -519.86 -1.44 -43.73 16 5 C 0.27 14.18 5.10 85.63 0.44 14.62 16 6 C -0.55 -31.46 9.38 25.60 0.24 -31.22 16 7 H 0.05 3.05 7.81 -2.91 -0.02 3.03 16 8 C 0.01 0.79 5.46 84.65 0.46 1.25 16 9 N -0.92 -54.60 13.29 21.45 0.28 -54.32 16 10 Si 0.96 45.11 29.54 68.60 2.03 47.14 16 11 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 12 H -0.28 -12.78 7.11 99.48 0.71 -12.08 16 13 H -0.27 -12.94 7.11 99.48 0.71 -12.23 16 14 S 2.69 113.10 5.65 -56.49 -0.32 112.78 16 15 O -0.99 -50.27 16.25 -128.00 -2.08 -52.35 16 16 O -0.99 -41.13 15.83 -128.00 -2.03 -43.15 16 17 C -0.71 -24.37 5.97 22.28 0.13 -24.24 16 18 C 0.01 0.21 8.41 22.25 0.19 0.40 16 19 C -0.22 -4.70 9.04 22.37 0.20 -4.50 16 20 C 0.18 4.26 6.66 22.51 0.15 4.41 16 21 O -0.32 -6.10 9.54 -92.39 -0.88 -6.98 16 22 C 0.01 0.10 9.81 113.37 1.11 1.21 16 23 C -0.15 -4.19 5.89 -19.77 -0.12 -4.30 16 24 C -0.10 -2.45 9.79 71.24 0.70 -1.75 16 25 C 0.00 -0.06 9.17 22.25 0.20 0.14 16 26 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 27 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 28 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 29 H 0.06 1.70 7.00 -2.39 -0.02 1.68 16 30 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 31 H 0.08 2.82 8.11 -2.38 -0.02 2.81 16 32 H 0.09 2.90 6.92 -2.38 -0.02 2.88 16 33 H 0.03 1.50 8.11 -2.39 -0.02 1.48 16 34 H 0.02 0.91 7.61 -2.39 -0.02 0.89 16 35 H 0.27 14.83 8.31 -92.71 -0.77 14.06 16 36 H 0.16 3.62 7.61 -2.91 -0.02 3.60 16 37 H 0.17 2.28 6.30 -2.91 -0.02 2.27 16 38 H 0.12 0.65 8.14 -2.39 -0.02 0.63 16 39 H 0.07 0.55 7.66 -2.39 -0.02 0.53 16 40 H 0.07 0.54 7.66 -2.39 -0.02 0.52 16 41 H 0.08 1.67 8.14 -2.39 -0.02 1.66 16 42 H 0.07 1.64 8.09 -2.39 -0.02 1.62 16 43 H 0.08 1.70 7.53 -2.39 -0.02 1.68 16 44 H 0.13 4.78 7.61 -2.91 -0.02 4.76 16 Total: -1.00 -73.95 375.91 1.66 -72.30 By element: Atomic # 1 Polarization: 13.01 SS G_CDS: 0.98 Total: 14.00 kcal Atomic # 6 Polarization: -50.79 SS G_CDS: 5.10 Total: -45.69 kcal Atomic # 7 Polarization: -96.90 SS G_CDS: -1.15 Total: -98.05 kcal Atomic # 8 Polarization: -97.49 SS G_CDS: -4.99 Total: -102.48 kcal Atomic # 14 Polarization: 45.11 SS G_CDS: 2.03 Total: 47.14 kcal Atomic # 16 Polarization: 113.10 SS G_CDS: -0.32 Total: 112.78 kcal Total: -73.95 1.66 -72.30 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001260636227.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.706 kcal (2) G-P(sol) polarization free energy of solvation -73.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.298 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds