Wall clock time and date at job start Tue Mar 31 2020 15:07:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.46946 * 2 1 4 4 C 1.52997 * 109.47401 * 180.02562 * 3 2 1 5 5 N 1.46494 * 109.47057 * 180.02562 * 4 3 2 6 6 C 1.36936 * 119.99785 * 275.96349 * 5 4 3 7 7 H 1.08000 * 119.99765 * 146.59778 * 6 5 4 8 8 C 1.38811 * 120.00195 * 326.59925 * 6 5 4 9 9 N 1.31619 * 120.00073 * 336.10892 * 8 6 5 10 10 Si 1.86803 * 119.99842 * 156.10883 * 8 6 5 11 11 H 1.48503 * 109.47153 * 90.00311 * 10 8 6 12 12 H 1.48503 * 109.46940 * 209.99971 * 10 8 6 13 13 H 1.48497 * 109.47473 * 329.99874 * 10 8 6 14 14 S 1.65602 * 120.00478 * 95.96951 * 5 4 3 15 15 O 1.42096 * 106.40684 * 156.45702 * 14 5 4 16 16 O 1.42104 * 106.39708 * 23.53455 * 14 5 4 17 17 C 1.76200 * 107.21753 * 269.99805 * 14 5 4 18 18 C 1.38293 * 119.94188 * 89.99759 * 17 14 5 19 19 C 1.38123 * 120.05048 * 180.02562 * 18 17 14 20 20 C 1.38751 * 119.95054 * 359.97438 * 19 18 17 21 21 O 1.35898 * 120.05949 * 180.02562 * 20 19 18 22 22 C 1.42896 * 116.99875 * 0.02562 * 21 20 19 23 23 C 1.38712 * 119.88439 * 0.27912 * 20 19 18 24 24 C 1.50700 * 120.02815 * 179.72518 * 23 20 19 25 25 C 1.38170 * 119.94134 * 359.44518 * 23 20 19 26 26 H 1.09000 * 109.47197 * 299.99970 * 1 2 3 27 27 H 1.08994 * 109.47411 * 60.00190 * 1 2 3 28 28 H 1.09006 * 109.46639 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47197 * 240.00030 * 2 1 3 30 30 H 1.09002 * 109.47138 * 119.99735 * 2 1 3 31 31 H 1.08998 * 109.46823 * 59.99574 * 3 2 1 32 32 H 1.09010 * 109.46843 * 300.00477 * 3 2 1 33 33 H 1.09000 * 109.47187 * 59.99757 * 4 3 2 34 34 H 1.09002 * 109.46693 * 299.99741 * 4 3 2 35 35 H 0.96998 * 120.00151 * 179.97438 * 9 8 6 36 36 H 1.08000 * 119.97631 * 359.97438 * 18 17 14 37 37 H 1.08006 * 120.02559 * 179.97438 * 19 18 17 38 38 H 1.09011 * 109.47228 * 59.99702 * 22 21 20 39 39 H 1.09003 * 109.47204 * 179.97438 * 22 21 20 40 40 H 1.09000 * 109.47252 * 299.99796 * 22 21 20 41 41 H 1.09004 * 109.47253 * 89.99890 * 24 23 20 42 42 H 1.09000 * 109.47409 * 209.99595 * 24 23 20 43 43 H 1.08995 * 109.47232 * 329.99739 * 24 23 20 44 44 H 1.08003 * 119.96738 * 180.27622 * 25 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4427 -0.0006 5 7 4.0581 2.8239 0.0000 6 6 4.1696 3.5111 -1.1792 7 1 3.9945 4.5766 -1.2018 8 6 4.5076 2.8384 -2.3454 9 7 5.1637 1.6992 -2.2814 10 14 4.0314 3.5500 -4.0056 11 1 5.1190 4.4347 -4.4954 12 1 3.8178 2.4453 -4.9748 13 1 2.7790 4.3357 -3.8666 14 16 4.4753 3.5541 1.4265 15 8 5.3861 4.5930 1.0943 16 8 4.7877 2.5081 2.3363 17 6 3.0286 4.3419 2.0518 18 6 2.1749 3.6509 2.8923 19 6 1.0399 4.2661 3.3833 20 6 0.7568 5.5785 3.0332 21 8 -0.3591 6.1861 3.5155 22 6 -1.1962 5.4143 4.3788 23 6 1.6119 6.2676 2.1858 24 6 1.3042 7.6911 1.7985 25 6 2.7489 5.6496 1.7019 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0278 0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.6765 1.9563 0.8899 32 1 1.6765 1.9564 -0.8900 33 1 3.9329 0.9290 -0.8908 34 1 3.9336 0.9287 0.8892 35 1 5.3996 1.2289 -3.0963 36 1 2.3955 2.6292 3.1643 37 1 0.3733 3.7259 4.0394 38 1 -0.6277 5.1066 5.2566 39 1 -2.0491 6.0166 4.6917 40 1 -1.5503 4.5309 3.8473 41 1 1.7634 8.3704 2.5167 42 1 1.7021 7.8911 0.8036 43 1 0.2247 7.8415 1.7950 44 1 3.4174 6.1873 1.0456 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001260636990.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:07:09 Heat of formation + Delta-G solvation = -93.858263 kcal Electronic energy + Delta-G solvation = -27180.325750 eV Core-core repulsion = 23418.032225 eV Total energy + Delta-G solvation = -3762.293525 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 1.49 seconds Orbital eigenvalues (eV) -40.22552 -37.43017 -36.39911 -36.02688 -34.64656 -33.79064 -32.78827 -31.26846 -30.22224 -28.12515 -27.76194 -26.63934 -24.62227 -22.52805 -22.23225 -21.71224 -20.37776 -18.44839 -18.05465 -17.31279 -16.54703 -16.27677 -16.21608 -15.91475 -14.73135 -14.63834 -14.48996 -14.35001 -13.89687 -13.55399 -13.48448 -13.27188 -13.04499 -12.92815 -12.39821 -12.22946 -12.16197 -12.12282 -11.84382 -11.51512 -11.43673 -11.29884 -11.19917 -11.00081 -10.96363 -10.81212 -10.78586 -10.58981 -10.39438 -10.30057 -10.12644 -9.93429 -9.65490 -9.03663 -8.76393 -8.27873 -7.66510 -6.22477 -3.90493 1.14232 1.44459 1.59874 3.12080 3.22448 3.30006 3.34013 3.61582 4.19308 4.51220 4.71504 4.79600 4.80726 4.92501 4.95720 5.08787 5.23781 5.26466 5.44420 5.44814 5.46411 5.50062 5.59444 5.63606 5.74670 5.80554 5.99056 6.02953 6.13675 6.21709 6.26779 6.31932 6.36829 6.38022 6.43679 6.49043 6.66761 6.77287 6.81614 6.94958 7.29476 7.35209 7.46069 7.83290 8.46387 9.04654 9.42086 10.79220 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.011198 B = 0.005174 C = 0.004674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2499.820538 B = 5410.211930 C = 5989.694192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.122 4.122 3 C -0.134 4.134 4 C 0.114 3.886 5 N -0.841 5.841 6 C -0.287 4.287 7 H 0.090 0.910 8 C 0.041 3.959 9 N -0.857 5.857 10 Si 0.911 3.089 11 H -0.277 1.277 12 H -0.283 1.283 13 H -0.270 1.270 14 S 2.639 3.361 15 O -0.972 6.972 16 O -0.998 6.998 17 C -0.683 4.683 18 C 0.011 3.989 19 C -0.229 4.229 20 C 0.163 3.837 21 O -0.313 6.313 22 C 0.025 3.975 23 C -0.141 4.141 24 C -0.102 4.102 25 C 0.018 3.982 26 H 0.048 0.952 27 H 0.051 0.949 28 H 0.046 0.954 29 H 0.062 0.938 30 H 0.057 0.943 31 H 0.045 0.955 32 H 0.067 0.933 33 H 0.118 0.882 34 H 0.058 0.942 35 H 0.266 0.734 36 H 0.138 0.862 37 H 0.131 0.869 38 H 0.056 0.944 39 H 0.099 0.901 40 H 0.057 0.943 41 H 0.066 0.934 42 H 0.069 0.931 43 H 0.068 0.932 44 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.697 3.118 7.992 15.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.160 4.160 3 C -0.173 4.173 4 C -0.013 4.013 5 N -0.672 5.672 6 C -0.422 4.422 7 H 0.108 0.892 8 C -0.166 4.166 9 N -0.497 5.497 10 Si 0.737 3.263 11 H -0.203 1.203 12 H -0.209 1.209 13 H -0.195 1.195 14 S 2.735 3.265 15 O -0.962 6.962 16 O -0.988 6.988 17 C -0.766 4.766 18 C -0.008 4.008 19 C -0.248 4.248 20 C 0.117 3.883 21 O -0.226 6.226 22 C -0.070 4.070 23 C -0.143 4.143 24 C -0.159 4.159 25 C -0.001 4.001 26 H 0.067 0.933 27 H 0.070 0.930 28 H 0.065 0.935 29 H 0.081 0.919 30 H 0.076 0.924 31 H 0.063 0.937 32 H 0.086 0.914 33 H 0.135 0.865 34 H 0.077 0.923 35 H 0.077 0.923 36 H 0.156 0.844 37 H 0.149 0.851 38 H 0.075 0.925 39 H 0.117 0.883 40 H 0.076 0.924 41 H 0.085 0.915 42 H 0.088 0.912 43 H 0.087 0.913 44 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -11.883 3.237 8.390 14.902 hybrid contribution -1.081 0.173 -0.588 1.242 sum -12.964 3.410 7.803 15.510 Atomic orbital electron populations 1.21761 0.96794 1.00615 1.01403 1.21465 0.94838 0.97930 1.01811 1.22051 0.98405 0.95252 1.01610 1.21445 0.90976 0.84040 1.04833 1.52562 1.76491 1.20594 1.17544 1.19025 1.45332 0.93873 0.83934 0.89197 1.25253 0.95128 0.96819 0.99424 1.69970 1.34037 1.16907 1.28787 0.86206 0.79315 0.78688 0.82096 1.20297 1.20854 1.19483 1.04394 0.73823 0.73850 0.74424 1.93436 1.59701 1.59424 1.83660 1.93409 1.82881 1.56009 1.66481 1.31393 1.25119 1.06390 1.13738 1.20658 0.90730 0.98899 0.90532 1.21233 1.01348 0.94936 1.07292 1.18992 0.85865 0.91120 0.92305 1.86058 1.33210 1.41334 1.62030 1.23084 0.93841 0.97007 0.93050 1.19330 0.95816 0.97891 1.01252 1.20592 1.02257 0.91458 1.01606 1.20698 0.93580 0.92205 0.93597 0.93308 0.92980 0.93477 0.91931 0.92437 0.93669 0.91433 0.86514 0.92342 0.92333 0.84429 0.85134 0.92532 0.88265 0.92441 0.91524 0.91220 0.91348 0.83697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 35. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.95 9.91 37.16 0.37 -1.58 16 2 C -0.12 -1.90 5.93 -26.73 -0.16 -2.06 16 3 C -0.13 -2.49 5.50 -26.73 -0.15 -2.63 16 4 C 0.11 2.54 5.29 -4.05 -0.02 2.52 16 5 N -0.84 -20.30 2.85 -59.91 -0.17 -20.48 16 6 C -0.29 -7.33 8.87 -15.06 -0.13 -7.46 16 7 H 0.09 2.23 7.94 -52.49 -0.42 1.82 16 8 C 0.04 1.04 4.98 -17.43 -0.09 0.95 16 9 N -0.86 -22.68 11.27 55.49 0.63 -22.06 16 10 Si 0.91 19.80 29.62 -169.99 -5.03 14.77 16 11 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 12 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 13 H -0.27 -5.74 7.11 56.52 0.40 -5.33 16 14 S 2.64 61.33 5.65 -107.50 -0.61 60.72 16 15 O -0.97 -25.13 16.49 -57.17 -0.94 -26.07 16 16 O -1.00 -24.31 15.82 -57.17 -0.90 -25.21 16 17 C -0.68 -13.24 5.97 -39.56 -0.24 -13.48 16 18 C 0.01 0.19 8.52 -39.60 -0.34 -0.15 16 19 C -0.23 -3.33 9.04 -39.43 -0.36 -3.68 16 20 C 0.16 2.42 6.66 -39.22 -0.26 2.16 16 21 O -0.31 -3.97 9.54 -19.42 -0.19 -4.15 16 22 C 0.03 0.21 9.81 101.05 0.99 1.20 16 23 C -0.14 -2.24 5.89 -104.47 -0.62 -2.85 16 24 C -0.10 -1.31 9.79 36.01 0.35 -0.95 16 25 C 0.02 0.33 9.17 -39.61 -0.36 -0.03 16 26 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 27 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 30 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 31 H 0.04 0.80 7.11 -51.93 -0.37 0.43 16 32 H 0.07 1.33 8.14 -51.92 -0.42 0.91 16 33 H 0.12 2.83 5.31 -51.93 -0.28 2.56 16 34 H 0.06 1.28 6.90 -51.93 -0.36 0.92 16 35 H 0.27 6.64 8.31 -40.82 -0.34 6.30 16 36 H 0.14 2.21 7.61 -52.49 -0.40 1.81 16 37 H 0.13 1.47 6.30 -52.48 -0.33 1.14 16 38 H 0.06 0.43 7.66 -51.92 -0.40 0.03 16 39 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.06 0.45 7.66 -51.93 -0.40 0.05 16 41 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 42 H 0.07 0.83 8.09 -51.93 -0.42 0.41 16 43 H 0.07 0.81 7.53 -51.93 -0.39 0.42 16 44 H 0.15 2.56 7.61 -52.48 -0.40 2.16 16 LS Contribution 371.09 15.07 5.59 5.59 Total: -1.00 -31.31 371.09 -9.31 -40.62 By element: Atomic # 1 Polarization: 10.99 SS G_CDS: -6.67 Total: 4.32 kcal Atomic # 6 Polarization: -27.05 SS G_CDS: -1.01 Total: -28.06 kcal Atomic # 7 Polarization: -42.99 SS G_CDS: 0.45 Total: -42.53 kcal Atomic # 8 Polarization: -53.40 SS G_CDS: -2.03 Total: -55.44 kcal Atomic # 14 Polarization: 19.80 SS G_CDS: -5.03 Total: 14.77 kcal Atomic # 16 Polarization: 61.33 SS G_CDS: -0.61 Total: 60.72 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -31.31 -9.31 -40.62 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001260636990.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.240 kcal (2) G-P(sol) polarization free energy of solvation -31.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.619 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.49 seconds