Wall clock time and date at job start Tue Mar 31 2020 15:07:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.46946 * 2 1 4 4 C 1.52997 * 109.47401 * 180.02562 * 3 2 1 5 5 N 1.46494 * 109.47057 * 180.02562 * 4 3 2 6 6 C 1.36936 * 119.99785 * 275.96349 * 5 4 3 7 7 H 1.08000 * 119.99765 * 146.59778 * 6 5 4 8 8 C 1.38811 * 120.00195 * 326.59925 * 6 5 4 9 9 N 1.31619 * 120.00073 * 336.10892 * 8 6 5 10 10 Si 1.86803 * 119.99842 * 156.10883 * 8 6 5 11 11 H 1.48503 * 109.47153 * 90.00311 * 10 8 6 12 12 H 1.48503 * 109.46940 * 209.99971 * 10 8 6 13 13 H 1.48497 * 109.47473 * 329.99874 * 10 8 6 14 14 S 1.65602 * 120.00478 * 95.96951 * 5 4 3 15 15 O 1.42096 * 106.40684 * 156.45702 * 14 5 4 16 16 O 1.42104 * 106.39708 * 23.53455 * 14 5 4 17 17 C 1.76200 * 107.21753 * 269.99805 * 14 5 4 18 18 C 1.38293 * 119.94188 * 89.99759 * 17 14 5 19 19 C 1.38123 * 120.05048 * 180.02562 * 18 17 14 20 20 C 1.38751 * 119.95054 * 359.97438 * 19 18 17 21 21 O 1.35898 * 120.05949 * 180.02562 * 20 19 18 22 22 C 1.42896 * 116.99875 * 0.02562 * 21 20 19 23 23 C 1.38712 * 119.88439 * 0.27912 * 20 19 18 24 24 C 1.50700 * 120.02815 * 179.72518 * 23 20 19 25 25 C 1.38170 * 119.94134 * 359.44518 * 23 20 19 26 26 H 1.09000 * 109.47197 * 299.99970 * 1 2 3 27 27 H 1.08994 * 109.47411 * 60.00190 * 1 2 3 28 28 H 1.09006 * 109.46639 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47197 * 240.00030 * 2 1 3 30 30 H 1.09002 * 109.47138 * 119.99735 * 2 1 3 31 31 H 1.08998 * 109.46823 * 59.99574 * 3 2 1 32 32 H 1.09010 * 109.46843 * 300.00477 * 3 2 1 33 33 H 1.09000 * 109.47187 * 59.99757 * 4 3 2 34 34 H 1.09002 * 109.46693 * 299.99741 * 4 3 2 35 35 H 0.96998 * 120.00151 * 179.97438 * 9 8 6 36 36 H 1.08000 * 119.97631 * 359.97438 * 18 17 14 37 37 H 1.08006 * 120.02559 * 179.97438 * 19 18 17 38 38 H 1.09011 * 109.47228 * 59.99702 * 22 21 20 39 39 H 1.09003 * 109.47204 * 179.97438 * 22 21 20 40 40 H 1.09000 * 109.47252 * 299.99796 * 22 21 20 41 41 H 1.09004 * 109.47253 * 89.99890 * 24 23 20 42 42 H 1.09000 * 109.47409 * 209.99595 * 24 23 20 43 43 H 1.08995 * 109.47232 * 329.99739 * 24 23 20 44 44 H 1.08003 * 119.96738 * 180.27622 * 25 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4427 -0.0006 5 7 4.0581 2.8239 0.0000 6 6 4.1696 3.5111 -1.1792 7 1 3.9945 4.5766 -1.2018 8 6 4.5076 2.8384 -2.3454 9 7 5.1637 1.6992 -2.2814 10 14 4.0314 3.5500 -4.0056 11 1 5.1190 4.4347 -4.4954 12 1 3.8178 2.4453 -4.9748 13 1 2.7790 4.3357 -3.8666 14 16 4.4753 3.5541 1.4265 15 8 5.3861 4.5930 1.0943 16 8 4.7877 2.5081 2.3363 17 6 3.0286 4.3419 2.0518 18 6 2.1749 3.6509 2.8923 19 6 1.0399 4.2661 3.3833 20 6 0.7568 5.5785 3.0332 21 8 -0.3591 6.1861 3.5155 22 6 -1.1962 5.4143 4.3788 23 6 1.6119 6.2676 2.1858 24 6 1.3042 7.6911 1.7985 25 6 2.7489 5.6496 1.7019 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0278 0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.6765 1.9563 0.8899 32 1 1.6765 1.9564 -0.8900 33 1 3.9329 0.9290 -0.8908 34 1 3.9336 0.9287 0.8892 35 1 5.3996 1.2289 -3.0963 36 1 2.3955 2.6292 3.1643 37 1 0.3733 3.7259 4.0394 38 1 -0.6277 5.1066 5.2566 39 1 -2.0491 6.0166 4.6917 40 1 -1.5503 4.5309 3.8473 41 1 1.7634 8.3704 2.5167 42 1 1.7021 7.8911 0.8036 43 1 0.2247 7.8415 1.7950 44 1 3.4174 6.1873 1.0456 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001260636990.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:07:07 Heat of formation + Delta-G solvation = -113.217724 kcal Electronic energy + Delta-G solvation = -27181.165239 eV Core-core repulsion = 23418.032225 eV Total energy + Delta-G solvation = -3763.133014 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 1.78 seconds Orbital eigenvalues (eV) -41.33801 -38.55943 -38.16197 -37.89813 -36.57565 -35.28122 -33.96061 -33.13668 -31.46720 -29.64270 -28.54978 -27.75725 -26.44521 -23.96648 -23.59042 -22.93316 -21.80001 -20.28341 -19.14997 -19.03557 -18.18042 -17.99937 -17.55935 -16.80990 -16.50405 -16.19153 -15.98265 -15.63104 -15.17379 -15.01756 -14.74572 -14.55701 -14.26382 -14.21209 -13.95954 -13.69391 -13.24007 -13.15932 -13.08058 -13.05877 -12.97896 -12.93154 -12.81994 -12.75115 -12.58216 -12.26247 -12.15367 -11.94765 -11.89395 -11.80854 -11.70895 -11.52372 -11.26594 -10.87952 -10.01548 -9.59946 -9.43626 -8.15203 -5.89298 -0.30437 -0.05539 0.19322 1.48663 1.50764 1.62134 2.18150 2.24948 2.45510 2.74902 2.94540 3.22456 3.48395 3.67322 3.80021 4.14942 4.16080 4.19693 4.23612 4.36017 4.38901 4.40046 4.47889 4.51595 4.55868 4.72448 4.78048 4.80331 4.90983 4.94807 4.98486 5.02018 5.08259 5.10376 5.17937 5.26537 5.28105 5.37553 5.47667 5.56312 5.60519 5.69771 5.98997 6.24759 6.53429 7.10896 7.48088 8.86288 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.011198 B = 0.005174 C = 0.004674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2499.820538 B = 5410.211930 C = 5989.694192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.120 4.120 3 C -0.123 4.123 4 C 0.111 3.889 5 N -0.852 5.852 6 C -0.306 4.306 7 H 0.088 0.912 8 C -0.001 4.001 9 N -0.890 5.890 10 Si 0.971 3.029 11 H -0.278 1.278 12 H -0.277 1.277 13 H -0.260 1.260 14 S 2.641 3.359 15 O -1.011 7.011 16 O -1.020 7.020 17 C -0.695 4.695 18 C 0.001 3.999 19 C -0.218 4.218 20 C 0.173 3.827 21 O -0.316 6.316 22 C 0.011 3.989 23 C -0.147 4.147 24 C -0.101 4.101 25 C 0.000 4.000 26 H 0.058 0.942 27 H 0.049 0.951 28 H 0.067 0.933 29 H 0.055 0.945 30 H 0.065 0.935 31 H 0.055 0.945 32 H 0.053 0.947 33 H 0.096 0.904 34 H 0.053 0.947 35 H 0.269 0.731 36 H 0.143 0.857 37 H 0.170 0.830 38 H 0.068 0.932 39 H 0.127 0.873 40 H 0.068 0.932 41 H 0.079 0.921 42 H 0.072 0.928 43 H 0.080 0.920 44 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.240 3.736 9.058 18.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.159 4.159 3 C -0.162 4.162 4 C -0.015 4.015 5 N -0.684 5.684 6 C -0.440 4.440 7 H 0.106 0.894 8 C -0.205 4.205 9 N -0.530 5.530 10 Si 0.794 3.206 11 H -0.204 1.204 12 H -0.203 1.203 13 H -0.184 1.184 14 S 2.743 3.257 15 O -1.002 7.002 16 O -1.010 7.010 17 C -0.784 4.784 18 C -0.018 4.018 19 C -0.237 4.237 20 C 0.126 3.874 21 O -0.229 6.229 22 C -0.083 4.083 23 C -0.149 4.149 24 C -0.158 4.158 25 C -0.020 4.020 26 H 0.077 0.923 27 H 0.068 0.932 28 H 0.086 0.914 29 H 0.073 0.927 30 H 0.084 0.916 31 H 0.073 0.927 32 H 0.072 0.928 33 H 0.113 0.887 34 H 0.071 0.929 35 H 0.078 0.922 36 H 0.161 0.839 37 H 0.188 0.812 38 H 0.087 0.913 39 H 0.145 0.855 40 H 0.087 0.913 41 H 0.098 0.902 42 H 0.091 0.909 43 H 0.099 0.901 44 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -15.394 3.822 9.435 18.455 hybrid contribution -0.100 0.050 -0.731 0.740 sum -15.494 3.872 8.703 18.188 Atomic orbital electron populations 1.21713 0.94372 1.02134 1.01802 1.21461 0.96919 0.95576 1.01924 1.21925 0.95511 0.97458 1.01342 1.21472 0.93525 0.83112 1.03426 1.52648 1.76995 1.21212 1.17503 1.19234 1.45819 0.94072 0.84909 0.89441 1.26036 0.94821 0.97172 1.02439 1.70073 1.35077 1.18185 1.29670 0.85291 0.79145 0.78100 0.78015 1.20427 1.20252 1.18409 1.03712 0.74731 0.73235 0.73990 1.93376 1.62389 1.60153 1.84241 1.93366 1.84099 1.56911 1.66580 1.30604 1.24349 1.07176 1.16313 1.20812 0.91344 0.99247 0.90413 1.21563 1.00520 0.94940 1.06709 1.19093 0.86167 0.91001 0.91117 1.86079 1.32402 1.42101 1.62272 1.23508 0.94112 0.97853 0.92828 1.19605 0.94981 0.99272 1.01006 1.20661 1.03160 0.89796 1.02183 1.20716 0.94837 0.91928 0.94472 0.92305 0.93188 0.91424 0.92655 0.91600 0.92656 0.92827 0.88662 0.92856 0.92181 0.83922 0.81250 0.91290 0.85505 0.91327 0.90208 0.90876 0.90110 0.84620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 42. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.41 9.91 71.98 0.71 -2.69 16 2 C -0.12 -3.64 5.93 30.60 0.18 -3.46 16 3 C -0.12 -4.59 5.50 30.59 0.17 -4.42 16 4 C 0.11 5.14 5.29 86.38 0.46 5.59 16 5 N -0.85 -42.90 2.85 -343.47 -0.98 -43.88 16 6 C -0.31 -16.23 8.87 84.03 0.75 -15.49 16 7 H 0.09 4.55 7.94 -2.91 -0.02 4.53 16 8 C 0.00 -0.03 4.98 84.86 0.42 0.39 16 9 N -0.89 -48.74 11.27 21.65 0.24 -48.49 16 10 Si 0.97 41.24 29.62 68.60 2.03 43.27 16 11 H -0.28 -11.81 7.11 99.48 0.71 -11.10 16 12 H -0.28 -11.42 7.11 99.48 0.71 -10.72 16 13 H -0.26 -10.52 7.11 99.48 0.71 -9.81 16 14 S 2.64 128.17 5.65 -56.49 -0.32 127.85 16 15 O -1.01 -55.15 16.49 -128.00 -2.11 -57.27 16 16 O -1.02 -51.62 15.82 -128.00 -2.03 -53.64 16 17 C -0.69 -27.26 5.97 22.28 0.13 -27.12 16 18 C 0.00 0.04 8.52 22.26 0.19 0.23 16 19 C -0.22 -5.64 9.04 22.37 0.20 -5.43 16 20 C 0.17 4.61 6.66 22.51 0.15 4.76 16 21 O -0.32 -6.68 9.54 -92.41 -0.88 -7.56 16 22 C 0.01 0.13 9.81 113.37 1.11 1.24 16 23 C -0.15 -4.40 5.89 -19.77 -0.12 -4.52 16 24 C -0.10 -2.37 9.79 71.24 0.70 -1.67 16 25 C 0.00 -0.01 9.17 22.25 0.20 0.20 16 26 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 27 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 28 H 0.07 1.35 8.14 -2.38 -0.02 1.33 16 29 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 30 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 31 H 0.05 1.92 7.11 -2.39 -0.02 1.91 16 32 H 0.05 2.13 8.14 -2.38 -0.02 2.11 16 33 H 0.10 4.85 5.31 -2.39 -0.01 4.84 16 34 H 0.05 2.44 6.90 -2.39 -0.02 2.42 16 35 H 0.27 13.80 8.31 -92.71 -0.77 13.03 16 36 H 0.14 4.45 7.61 -2.91 -0.02 4.43 16 37 H 0.17 2.97 6.30 -2.91 -0.02 2.96 16 38 H 0.07 0.70 7.66 -2.38 -0.02 0.68 16 39 H 0.13 0.86 8.14 -2.39 -0.02 0.84 16 40 H 0.07 0.71 7.66 -2.39 -0.02 0.69 16 41 H 0.08 1.66 8.14 -2.38 -0.02 1.64 16 42 H 0.07 1.64 8.09 -2.39 -0.02 1.62 16 43 H 0.08 1.68 7.53 -2.39 -0.02 1.66 16 44 H 0.14 5.02 7.61 -2.91 -0.02 5.00 16 Total: -1.00 -70.26 371.09 2.21 -68.05 By element: Atomic # 1 Polarization: 23.07 SS G_CDS: 0.99 Total: 24.06 kcal Atomic # 6 Polarization: -57.65 SS G_CDS: 5.26 Total: -52.39 kcal Atomic # 7 Polarization: -91.64 SS G_CDS: -0.73 Total: -92.37 kcal Atomic # 8 Polarization: -113.45 SS G_CDS: -5.02 Total: -118.47 kcal Atomic # 14 Polarization: 41.24 SS G_CDS: 2.03 Total: 43.27 kcal Atomic # 16 Polarization: 128.17 SS G_CDS: -0.32 Total: 127.85 kcal Total: -70.26 2.21 -68.05 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001260636990.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.168 kcal (2) G-P(sol) polarization free energy of solvation -70.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.050 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.78 seconds