Wall clock time and date at job start Tue Mar 31 2020 15:36:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53001 * 109.47075 * 2 1 4 4 H 1.08995 * 109.47111 * 56.46643 * 3 2 1 5 5 C 1.50703 * 109.46965 * 176.47207 * 3 2 1 6 6 H 1.07998 * 119.99976 * 119.99577 * 5 3 2 7 7 C 1.37874 * 119.99672 * 299.99672 * 5 3 2 8 8 N 1.31517 * 120.00320 * 0.02562 * 7 5 3 9 9 Si 1.86801 * 119.99938 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.46927 * 359.97438 * 9 7 5 11 11 H 1.48498 * 109.47210 * 119.99556 * 9 7 5 12 12 H 1.48497 * 109.47259 * 240.00211 * 9 7 5 13 13 N 1.46504 * 109.46713 * 296.47029 * 3 2 1 14 14 S 1.65600 * 119.99863 * 145.12095 * 13 3 2 15 15 O 1.42099 * 106.40311 * 180.93966 * 14 13 3 16 16 O 1.42103 * 106.40144 * 48.02337 * 14 13 3 17 17 C 1.76197 * 107.21902 * 294.48413 * 14 13 3 18 18 C 1.38160 * 120.03371 * 114.71494 * 17 14 13 19 19 C 1.38247 * 120.05712 * 180.25421 * 18 17 14 20 20 C 1.50698 * 119.94352 * 179.74218 * 19 18 17 21 21 C 1.38278 * 120.11203 * 359.76679 * 19 18 17 22 22 C 1.50702 * 119.97648 * 179.97438 * 21 19 18 23 23 C 1.38127 * 120.05658 * 359.95436 * 21 19 18 24 24 C 1.38717 * 120.02171 * 294.43723 * 17 14 13 25 25 O 1.35893 * 120.05758 * 359.97438 * 24 17 14 26 26 C 1.42903 * 116.99830 * 179.72941 * 25 24 17 27 27 H 1.09000 * 109.46840 * 185.44853 * 1 2 3 28 28 H 1.08996 * 109.47133 * 305.44814 * 1 2 3 29 29 H 1.09000 * 109.47121 * 65.44700 * 1 2 3 30 30 H 1.09003 * 109.46934 * 239.99512 * 2 1 3 31 31 H 1.09005 * 109.46814 * 119.99733 * 2 1 3 32 32 H 0.96997 * 120.00001 * 180.02562 * 8 7 5 33 33 H 0.97004 * 120.00207 * 325.11409 * 13 3 2 34 34 H 1.08003 * 119.97172 * 359.97438 * 18 17 14 35 35 H 1.09004 * 109.47579 * 270.02320 * 20 19 18 36 36 H 1.09007 * 109.47222 * 30.02154 * 20 19 18 37 37 H 1.09005 * 109.47218 * 150.01980 * 20 19 18 38 38 H 1.09001 * 109.47146 * 269.97681 * 22 21 19 39 39 H 1.09004 * 109.47000 * 29.97301 * 22 21 19 40 40 H 1.08997 * 109.47629 * 149.97519 * 22 21 19 41 41 H 1.08003 * 120.02691 * 180.02562 * 23 21 19 42 42 H 1.09008 * 109.47156 * 180.02562 * 26 25 24 43 43 H 1.08999 * 109.47570 * 59.99985 * 26 25 24 44 44 H 1.09005 * 109.47191 * 299.99372 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6260 1.9743 0.8566 5 6 3.5446 1.4434 0.0874 6 1 4.1309 1.8946 -0.6993 7 6 4.1723 0.8681 1.1718 8 7 3.4583 0.3182 2.1296 9 14 6.0372 0.8698 1.2806 10 1 6.6021 1.5449 0.0847 11 1 6.4609 1.5949 2.5053 12 1 6.5309 -0.5295 1.3379 13 7 1.6223 2.1081 -1.2365 14 16 1.2286 3.7165 -1.2187 15 8 0.8503 4.0517 -2.5468 16 8 2.2732 4.3776 -0.5179 17 6 -0.2199 3.8880 -0.2303 18 6 -0.1668 4.5905 0.9582 19 6 -1.3018 4.7209 1.7367 20 6 -1.2396 5.4827 3.0355 21 6 -2.4938 4.1531 1.3259 22 6 -3.7290 4.2967 2.1772 23 6 -2.5535 3.4547 0.1357 24 6 -1.4159 3.3227 -0.6477 25 8 -1.4721 2.6366 -1.8193 26 6 -2.7355 2.0765 -2.1831 27 1 -0.3633 -1.0230 0.0976 28 1 -0.3633 0.5960 0.8371 29 1 -0.3633 0.4270 -0.9347 30 1 1.8934 -0.5139 -0.8900 31 1 1.8934 -0.5138 0.8901 32 1 3.9000 -0.0861 2.8927 33 1 1.5765 1.6066 -2.0656 34 1 0.7632 5.0342 1.2816 35 1 -0.9830 4.7998 3.8454 36 1 -0.4811 6.2622 2.9636 37 1 -2.2097 5.9372 3.2370 38 1 -3.7854 3.4645 2.8789 39 1 -3.6825 5.2352 2.7297 40 1 -4.6126 4.2943 1.5390 41 1 -3.4849 3.0118 -0.1849 42 1 -2.6414 1.5566 -3.1366 43 1 -3.4735 2.8735 -2.2748 44 1 -3.0551 1.3718 -1.4155 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001260775434.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:36:52 Heat of formation + Delta-G solvation = -121.677205 kcal Electronic energy + Delta-G solvation = -27684.715708 eV Core-core repulsion = 23921.215863 eV Total energy + Delta-G solvation = -3763.499845 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.38239 -39.08630 -38.12647 -37.61469 -36.78039 -34.16924 -34.08961 -32.83163 -32.20971 -28.99188 -28.57152 -28.48773 -26.60543 -24.86482 -23.32396 -22.39918 -21.90550 -20.33906 -19.22086 -18.69984 -18.28504 -17.74907 -17.33707 -16.97276 -16.80207 -16.19890 -15.48622 -15.38966 -15.21511 -15.07546 -14.99546 -14.84834 -14.62558 -13.61462 -13.57190 -13.52641 -13.35727 -13.27321 -13.17240 -13.05329 -12.99618 -12.94318 -12.70503 -12.67758 -12.59135 -12.58683 -12.26207 -12.07648 -11.79994 -11.73278 -11.56466 -11.50590 -11.31328 -10.44653 -10.14327 -9.96492 -9.21479 -8.08896 -6.21229 -0.40661 -0.13510 0.31601 1.40577 1.43569 1.55145 2.13040 2.25143 2.44370 2.49476 2.90146 3.17098 3.48662 3.70185 3.83786 4.01225 4.17826 4.31276 4.34710 4.40586 4.47130 4.53160 4.61496 4.66240 4.70844 4.71282 4.75595 4.83768 4.88016 4.91633 4.93760 5.12451 5.15035 5.17150 5.24600 5.34063 5.42670 5.53571 5.69490 5.75773 5.81019 6.03080 6.22911 6.30206 6.49411 6.85180 7.46702 8.93799 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.013124 B = 0.005123 C = 0.004769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2132.974501 B = 5464.406764 C = 5869.871217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.118 4.118 3 C 0.292 3.708 4 H 0.015 0.985 5 C -0.540 4.540 6 H 0.048 0.952 7 C 0.022 3.978 8 N -0.910 5.910 9 Si 0.948 3.052 10 H -0.276 1.276 11 H -0.281 1.281 12 H -0.272 1.272 13 N -1.093 6.093 14 S 2.703 3.297 15 O -0.993 6.993 16 O -0.997 6.997 17 C -0.722 4.722 18 C -0.008 4.008 19 C -0.153 4.153 20 C -0.112 4.112 21 C 0.004 3.996 22 C -0.122 4.122 23 C -0.227 4.227 24 C 0.217 3.783 25 O -0.328 6.328 26 C 0.012 3.988 27 H 0.056 0.944 28 H 0.031 0.969 29 H 0.058 0.942 30 H 0.045 0.955 31 H 0.077 0.923 32 H 0.264 0.736 33 H 0.414 0.586 34 H 0.132 0.868 35 H 0.074 0.926 36 H 0.066 0.934 37 H 0.098 0.902 38 H 0.091 0.909 39 H 0.092 0.908 40 H 0.090 0.910 41 H 0.169 0.831 42 H 0.121 0.879 43 H 0.076 0.924 44 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.208 3.934 -0.500 19.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.158 4.158 3 C 0.187 3.813 4 H 0.033 0.967 5 C -0.579 4.579 6 H 0.066 0.934 7 C -0.178 4.178 8 N -0.550 5.550 9 Si 0.774 3.226 10 H -0.201 1.201 11 H -0.207 1.207 12 H -0.197 1.197 13 N -0.854 5.854 14 S 2.796 3.204 15 O -0.984 6.984 16 O -0.988 6.988 17 C -0.812 4.812 18 C -0.027 4.027 19 C -0.155 4.155 20 C -0.168 4.168 21 C 0.004 3.996 22 C -0.178 4.178 23 C -0.246 4.246 24 C 0.168 3.832 25 O -0.241 6.241 26 C -0.081 4.081 27 H 0.075 0.925 28 H 0.050 0.950 29 H 0.077 0.923 30 H 0.063 0.937 31 H 0.096 0.904 32 H 0.074 0.926 33 H 0.248 0.752 34 H 0.150 0.850 35 H 0.092 0.908 36 H 0.085 0.915 37 H 0.116 0.884 38 H 0.109 0.891 39 H 0.110 0.890 40 H 0.108 0.892 41 H 0.187 0.813 42 H 0.139 0.861 43 H 0.095 0.905 44 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -18.580 4.564 -0.745 19.146 hybrid contribution 0.867 -0.515 0.140 1.018 sum -17.713 4.049 -0.605 18.180 Atomic orbital electron populations 1.21698 0.96167 1.00608 1.00705 1.21675 0.94518 0.97602 1.02014 1.18217 0.92584 0.90887 0.79632 0.96708 1.21871 0.93156 1.36700 1.06217 0.93408 1.25530 1.02173 0.94898 0.95215 1.69949 1.36223 1.38763 1.10057 0.85666 0.81182 0.77924 0.77846 1.20123 1.20662 1.19725 1.55183 1.82972 1.29026 1.18211 1.01026 0.73739 0.72976 0.72688 1.93479 1.84692 1.83271 1.36935 1.93515 1.55097 1.74470 1.75684 1.29873 1.17119 1.18973 1.15209 1.20820 0.99489 0.92137 0.90250 1.20109 0.92730 1.03437 0.99190 1.20884 1.04319 0.99273 0.92320 1.20303 0.95800 0.90335 0.93207 1.21105 0.92887 1.04391 0.99378 1.21495 0.98460 1.07329 0.97359 1.18380 0.92614 0.87328 0.84838 1.86137 1.37668 1.65536 1.34712 1.23547 0.82536 0.98951 1.03096 0.92511 0.94979 0.92335 0.93669 0.90439 0.92638 0.75186 0.85010 0.90761 0.91508 0.88377 0.89068 0.88990 0.89169 0.81348 0.86059 0.90528 0.90630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.87 9.72 71.98 0.70 -4.17 16 2 C -0.12 -5.33 5.36 30.60 0.16 -5.17 16 3 C 0.29 14.63 2.16 44.25 0.10 14.73 16 4 H 0.02 0.83 7.88 -2.39 -0.02 0.81 16 5 C -0.54 -30.64 8.84 25.60 0.23 -30.41 16 6 H 0.05 2.80 7.81 -2.91 -0.02 2.77 16 7 C 0.02 1.20 5.30 84.65 0.45 1.65 16 8 N -0.91 -51.26 11.30 21.45 0.24 -51.02 16 9 Si 0.95 44.96 29.54 68.60 2.03 46.99 16 10 H -0.28 -13.21 7.11 99.48 0.71 -12.51 16 11 H -0.28 -13.12 7.11 99.48 0.71 -12.42 16 12 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 13 N -1.09 -48.13 4.95 -172.52 -0.85 -48.99 16 14 S 2.70 120.49 5.24 -56.49 -0.30 120.19 16 15 O -0.99 -45.45 17.27 -122.73 -2.12 -47.57 16 16 O -1.00 -51.58 16.72 -128.00 -2.14 -53.72 16 17 C -0.72 -27.68 5.79 22.37 0.13 -27.55 16 18 C -0.01 -0.27 9.20 22.25 0.20 -0.07 16 19 C -0.15 -4.26 5.88 -19.85 -0.12 -4.38 16 20 C -0.11 -2.29 9.60 71.24 0.68 -1.61 16 21 C 0.00 0.09 5.88 -19.88 -0.12 -0.03 16 22 C -0.12 -1.59 9.60 71.24 0.68 -0.90 16 23 C -0.23 -5.53 8.69 22.37 0.19 -5.34 16 24 C 0.22 6.95 6.63 22.51 0.15 7.10 16 25 O -0.33 -9.82 8.87 -82.38 -0.73 -10.55 16 26 C 0.01 0.22 9.81 113.37 1.11 1.33 16 27 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 28 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 29 H 0.06 1.92 7.47 -2.39 -0.02 1.90 16 30 H 0.04 1.95 8.14 -2.39 -0.02 1.93 16 31 H 0.08 3.94 5.98 -2.38 -0.01 3.93 16 32 H 0.26 14.08 8.31 -92.71 -0.77 13.31 16 33 H 0.41 16.23 8.84 -96.74 -0.85 15.38 16 34 H 0.13 4.97 7.33 -2.91 -0.02 4.95 16 35 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 36 H 0.07 1.37 8.08 -2.38 -0.02 1.36 16 37 H 0.10 1.37 5.94 -2.38 -0.01 1.36 16 38 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 39 H 0.09 0.95 5.94 -2.38 -0.01 0.93 16 40 H 0.09 0.83 8.08 -2.39 -0.02 0.81 16 41 H 0.17 2.72 6.30 -2.91 -0.02 2.70 16 42 H 0.12 1.69 8.14 -2.38 -0.02 1.67 16 43 H 0.08 1.04 7.66 -2.39 -0.02 1.02 16 44 H 0.08 1.08 7.66 -2.38 -0.02 1.06 16 Total: -1.00 -75.45 369.81 0.85 -74.60 By element: Atomic # 1 Polarization: 24.72 SS G_CDS: 0.16 Total: 24.88 kcal Atomic # 6 Polarization: -59.37 SS G_CDS: 4.56 Total: -54.81 kcal Atomic # 7 Polarization: -99.39 SS G_CDS: -0.61 Total: -100.00 kcal Atomic # 8 Polarization: -106.85 SS G_CDS: -4.99 Total: -111.84 kcal Atomic # 14 Polarization: 44.96 SS G_CDS: 2.03 Total: 46.99 kcal Atomic # 16 Polarization: 120.49 SS G_CDS: -0.30 Total: 120.19 kcal Total: -75.45 0.85 -74.60 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001260775434.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.081 kcal (2) G-P(sol) polarization free energy of solvation -75.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.596 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds