Wall clock time and date at job start Tue Mar 31 2020 14:41:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50702 * 109.47079 * 2 1 4 4 C 1.38103 * 119.95869 * 264.98213 * 3 2 1 5 5 C 1.38500 * 120.39086 * 180.02562 * 4 3 2 6 6 C 1.37832 * 120.30110 * 359.67541 * 5 4 3 7 7 C 1.39680 * 119.90578 * 0.62336 * 6 5 4 8 8 C 1.47504 * 120.19226 * 179.67428 * 7 6 5 9 9 O 1.21610 * 120.00130 * 179.72075 * 8 7 6 10 10 N 1.34774 * 120.00361 * 359.72799 * 8 7 6 11 11 C 1.39919 * 120.00512 * 185.22286 * 10 8 7 12 12 C 1.38938 * 120.00185 * 33.69147 * 11 10 8 13 13 C 1.38001 * 119.99771 * 180.30352 * 12 11 10 14 14 C 1.38908 * 119.99757 * 359.46869 * 13 12 11 15 15 O 1.35783 * 119.99546 * 180.25890 * 14 13 12 16 16 C 1.34808 * 117.00205 * 186.16317 * 15 14 13 17 17 H 1.08000 * 120.00190 * 5.40563 * 16 15 14 18 18 C 1.38636 * 120.00031 * 185.39566 * 16 15 14 19 19 N 1.31571 * 119.99756 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 119.99984 * 180.02562 * 18 16 15 21 21 H 1.48502 * 109.46876 * 0.02562 * 20 18 16 22 22 H 1.48498 * 109.46813 * 120.00326 * 20 18 16 23 23 H 1.48499 * 109.46975 * 240.00409 * 20 18 16 24 24 C 1.38910 * 120.01173 * 0.51002 * 14 13 12 25 25 C 1.38003 * 119.99995 * 359.76618 * 24 14 13 26 26 C 1.38659 * 119.95469 * 85.00362 * 3 2 1 27 27 O 1.35661 * 120.14912 * 359.97438 * 26 3 2 28 28 H 1.09008 * 109.47023 * 299.99328 * 1 2 3 29 29 H 1.09001 * 109.47803 * 59.99395 * 1 2 3 30 30 H 1.08992 * 109.47124 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.46624 * 240.00828 * 2 1 3 32 32 H 1.08997 * 109.47367 * 120.00382 * 2 1 3 33 33 H 1.08001 * 119.80379 * 0.02562 * 4 3 2 34 34 H 1.07999 * 119.84976 * 179.97438 * 5 4 3 35 35 H 1.08008 * 120.04574 * 180.30315 * 6 5 4 36 36 H 0.97000 * 120.00049 * 5.21975 * 10 8 7 37 37 H 1.08002 * 120.00463 * 0.02655 * 12 11 10 38 38 H 1.08000 * 119.99540 * 179.72177 * 13 12 11 39 39 H 0.96999 * 119.99957 * 180.02562 * 19 18 16 40 40 H 1.07996 * 120.00120 * 179.74818 * 24 14 13 41 41 H 1.07997 * 119.99785 * 179.97438 * 25 24 14 42 42 H 0.96706 * 113.99406 * 270.01302 * 27 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3609 2.0362 -1.1919 5 6 2.8239 3.3414 -1.2023 6 6 2.9552 4.0421 -0.0226 7 6 2.6324 3.4299 1.1906 8 6 2.7774 4.1715 2.4574 9 8 2.4906 3.6368 3.5113 10 7 3.2275 5.4418 2.4470 11 6 3.4690 6.1085 3.6532 12 6 3.9317 5.4024 4.7567 13 6 4.1638 6.0589 5.9482 14 6 3.9455 7.4276 6.0409 15 8 4.1789 8.0745 7.2117 16 6 3.8271 9.3744 7.2736 17 1 3.3026 9.8317 6.4477 18 6 4.1385 10.1240 8.3974 19 7 4.7777 9.5669 9.4034 20 14 3.6503 11.9251 8.4834 21 1 2.9462 12.3073 7.2330 22 1 2.7487 12.1387 9.6438 23 1 4.8676 12.7608 8.6418 24 6 3.4833 8.1338 4.9376 25 6 3.2456 7.4765 3.7477 26 6 2.1645 2.1085 1.1968 27 8 1.8420 1.5053 2.3684 28 1 -0.3633 0.5138 0.8901 29 1 -0.3635 0.5139 -0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8933 -0.5137 -0.8901 32 1 1.8934 -0.5139 0.8899 33 1 2.2562 1.4963 -2.1215 34 1 3.0787 3.8140 -2.1394 35 1 3.3120 5.0615 -0.0360 36 1 3.3841 5.8939 1.6032 37 1 4.1054 4.3390 4.6834 38 1 4.5192 5.5092 6.8072 39 1 4.9952 10.0913 10.1899 40 1 3.3097 9.1972 5.0111 41 1 2.8859 8.0255 2.8901 42 1 0.9188 1.6239 2.6307 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001319829026.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:41:25 Heat of formation + Delta-G solvation = -52.903271 kcal Electronic energy + Delta-G solvation = -26184.368247 eV Core-core repulsion = 22288.406712 eV Total energy + Delta-G solvation = -3895.961535 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.130 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.82583 -39.51378 -38.45812 -36.91238 -36.38697 -34.51182 -33.84450 -32.19432 -30.80983 -30.21376 -29.41833 -27.81509 -25.40922 -24.46980 -23.87681 -22.28380 -21.75853 -21.32360 -19.97555 -18.57457 -18.06147 -17.62885 -17.16546 -16.56273 -15.94629 -15.79408 -15.18743 -14.88017 -14.55815 -14.51018 -14.25552 -14.03231 -13.95265 -13.57166 -13.42262 -13.20940 -12.81857 -12.65932 -12.53553 -12.40875 -12.04384 -11.83626 -11.76314 -11.55209 -11.51541 -11.27405 -11.03032 -10.80255 -10.70944 -10.43519 -9.72572 -9.53076 -9.28859 -9.21200 -8.89724 -8.69601 -8.20106 -6.91125 -6.44239 -4.01942 0.52601 0.90100 2.14877 2.22174 2.84896 3.12681 3.13768 3.19539 3.24698 3.54099 3.97179 3.98099 4.29038 4.44349 4.55818 4.61311 4.75428 4.89508 4.98881 5.03829 5.11356 5.14253 5.31769 5.36280 5.51693 5.54941 5.56531 5.62675 5.78567 5.83765 5.87394 6.00056 6.11420 6.15485 6.22830 6.29193 6.39912 6.80989 6.85888 6.99578 7.16413 7.22548 7.41403 7.51559 7.71015 7.78605 8.00346 8.37272 9.01177 9.72063 10.73837 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.031893 B = 0.002165 C = 0.002089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 877.727387 B =12930.871988 C =13399.753517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.082 4.082 3 C -0.120 4.120 4 C -0.081 4.081 5 C -0.135 4.135 6 C -0.078 4.078 7 C -0.157 4.157 8 C 0.548 3.452 9 O -0.507 6.507 10 N -0.657 5.657 11 C 0.037 3.963 12 C -0.066 4.066 13 C -0.177 4.177 14 C 0.147 3.853 15 O -0.176 6.176 16 C -0.390 4.390 17 H 0.092 0.908 18 C 0.038 3.962 19 N -0.861 5.861 20 Si 0.941 3.059 21 H -0.267 1.267 22 H -0.276 1.276 23 H -0.276 1.276 24 C -0.219 4.219 25 C -0.090 4.090 26 C 0.170 3.830 27 O -0.473 6.473 28 H 0.054 0.946 29 H 0.055 0.945 30 H 0.060 0.940 31 H 0.072 0.928 32 H 0.081 0.919 33 H 0.129 0.871 34 H 0.131 0.869 35 H 0.130 0.870 36 H 0.399 0.601 37 H 0.125 0.875 38 H 0.121 0.879 39 H 0.269 0.731 40 H 0.132 0.868 41 H 0.110 0.890 42 H 0.394 0.606 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.558 -13.448 -23.456 27.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.120 4.120 3 C -0.120 4.120 4 C -0.100 4.100 5 C -0.153 4.153 6 C -0.097 4.097 7 C -0.160 4.160 8 C 0.335 3.665 9 O -0.382 6.382 10 N -0.302 5.302 11 C -0.055 4.055 12 C -0.086 4.086 13 C -0.196 4.196 14 C 0.093 3.907 15 O -0.080 6.080 16 C -0.467 4.467 17 H 0.109 0.891 18 C -0.166 4.166 19 N -0.496 5.496 20 Si 0.766 3.234 21 H -0.191 1.191 22 H -0.202 1.202 23 H -0.202 1.202 24 C -0.239 4.239 25 C -0.111 4.111 26 C 0.124 3.876 27 O -0.284 6.284 28 H 0.073 0.927 29 H 0.074 0.926 30 H 0.079 0.921 31 H 0.091 0.909 32 H 0.100 0.900 33 H 0.147 0.853 34 H 0.149 0.851 35 H 0.148 0.852 36 H 0.234 0.766 37 H 0.143 0.857 38 H 0.139 0.861 39 H 0.079 0.921 40 H 0.149 0.851 41 H 0.128 0.872 42 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges -5.999 -14.032 -22.234 26.967 hybrid contribution -0.591 1.462 -0.508 1.657 sum -6.590 -12.570 -22.741 26.807 Atomic orbital electron populations 1.21723 0.94676 1.01965 1.01994 1.20457 0.96136 0.91880 1.03478 1.20243 1.02008 0.97614 0.92153 1.21122 0.96774 0.94811 0.97265 1.21067 1.01214 0.94817 0.98172 1.21260 0.97358 0.99701 0.91367 1.20453 1.06982 0.94740 0.93873 1.18065 0.78060 0.81703 0.88651 1.90830 1.47940 1.67690 1.31784 1.43141 1.65486 1.13484 1.08122 1.17213 1.09770 0.91632 0.86868 1.20619 0.97078 0.99362 0.91536 1.20127 1.09253 0.91932 0.98338 1.19425 0.93053 0.91809 0.86438 1.84005 1.71327 1.24794 1.27842 1.21355 1.37158 0.83604 1.04544 0.89060 1.25300 0.96433 1.00138 0.94766 1.70057 1.37047 1.36682 1.05835 0.85643 0.78425 0.80568 0.78753 1.19124 1.20154 1.20166 1.20973 1.09306 1.00828 0.92760 1.20465 1.00597 0.92429 0.97568 1.18288 0.95332 0.88557 0.85454 1.84729 1.33398 1.74202 1.36043 0.92728 0.92616 0.92114 0.90890 0.90037 0.85318 0.85142 0.85242 0.76555 0.85732 0.86072 0.92060 0.85075 0.87180 0.74819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.87 9.89 37.16 0.37 -0.50 16 2 C -0.08 -0.58 5.78 -27.88 -0.16 -0.74 16 3 C -0.12 -1.06 5.14 -104.52 -0.54 -1.60 16 4 C -0.08 -0.59 9.66 -39.53 -0.38 -0.97 16 5 C -0.13 -0.97 10.02 -39.63 -0.40 -1.36 16 6 C -0.08 -0.69 9.53 -39.19 -0.37 -1.06 16 7 C -0.16 -1.88 5.89 -104.85 -0.62 -2.50 16 8 C 0.55 8.39 7.50 -12.48 -0.09 8.30 16 9 O -0.51 -9.56 12.87 -16.60 -0.21 -9.78 16 10 N -0.66 -9.49 5.28 -10.77 -0.06 -9.55 16 11 C 0.04 0.68 6.27 -83.65 -0.52 0.16 16 12 C -0.07 -1.34 8.64 -39.41 -0.34 -1.68 16 13 C -0.18 -3.97 9.98 -39.42 -0.39 -4.36 16 14 C 0.15 3.61 6.65 -39.08 -0.26 3.35 16 15 O -0.18 -5.08 9.75 0.01 0.00 -5.08 16 16 C -0.39 -10.92 9.44 30.88 0.29 -10.63 16 17 H 0.09 2.35 5.29 -52.49 -0.28 2.07 16 18 C 0.04 1.04 5.49 -17.52 -0.10 0.95 16 19 N -0.86 -25.40 13.67 55.48 0.76 -24.64 16 20 Si 0.94 20.51 29.55 -169.99 -5.02 15.49 16 21 H -0.27 -5.55 7.11 56.52 0.40 -5.14 16 22 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 23 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 24 C -0.22 -4.74 9.13 -39.42 -0.36 -5.10 16 25 C -0.09 -1.65 9.96 -39.41 -0.39 -2.04 16 26 C 0.17 1.95 6.69 -38.70 -0.26 1.69 16 27 O -0.47 -5.76 10.71 -40.56 -0.43 -6.20 16 28 H 0.05 0.34 8.14 -51.92 -0.42 -0.08 16 29 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.07 0.41 8.05 -51.93 -0.42 -0.01 16 32 H 0.08 0.65 7.69 -51.93 -0.40 0.25 16 33 H 0.13 0.62 8.06 -52.49 -0.42 0.19 16 34 H 0.13 0.60 8.06 -52.49 -0.42 0.18 16 35 H 0.13 0.86 6.42 -52.48 -0.34 0.52 16 36 H 0.40 4.25 6.86 -40.82 -0.28 3.97 16 37 H 0.12 2.51 6.43 -52.49 -0.34 2.17 16 38 H 0.12 2.64 8.06 -52.49 -0.42 2.22 16 39 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16 40 H 0.13 2.80 5.71 -52.49 -0.30 2.50 16 41 H 0.11 1.62 8.06 -52.49 -0.42 1.19 16 42 H 0.39 3.52 9.06 45.56 0.41 3.93 16 LS Contribution 359.32 15.07 5.41 5.41 Total: -1.00 -34.66 359.32 -8.11 -42.77 By element: Atomic # 1 Polarization: 13.69 SS G_CDS: -4.03 Total: 9.66 kcal Atomic # 6 Polarization: -13.57 SS G_CDS: -4.53 Total: -18.10 kcal Atomic # 7 Polarization: -34.88 SS G_CDS: 0.70 Total: -34.18 kcal Atomic # 8 Polarization: -20.41 SS G_CDS: -0.65 Total: -21.06 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.02 Total: 15.49 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -34.66 -8.11 -42.77 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319829026.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.132 kcal (2) G-P(sol) polarization free energy of solvation -34.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.772 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds