Wall clock time and date at job start Tue Mar 31 2020 14:41:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50702 * 109.47079 * 2 1 4 4 C 1.38103 * 119.95869 * 264.98213 * 3 2 1 5 5 C 1.38500 * 120.39086 * 180.02562 * 4 3 2 6 6 C 1.37832 * 120.30110 * 359.67541 * 5 4 3 7 7 C 1.39680 * 119.90578 * 0.62336 * 6 5 4 8 8 C 1.47504 * 120.19226 * 179.67428 * 7 6 5 9 9 O 1.21610 * 120.00130 * 179.72075 * 8 7 6 10 10 N 1.34774 * 120.00361 * 359.72799 * 8 7 6 11 11 C 1.39919 * 120.00512 * 185.22286 * 10 8 7 12 12 C 1.38938 * 120.00185 * 33.69147 * 11 10 8 13 13 C 1.38001 * 119.99771 * 180.30352 * 12 11 10 14 14 C 1.38908 * 119.99757 * 359.46869 * 13 12 11 15 15 O 1.35783 * 119.99546 * 180.25890 * 14 13 12 16 16 C 1.34808 * 117.00205 * 186.16317 * 15 14 13 17 17 H 1.08000 * 120.00190 * 5.40563 * 16 15 14 18 18 C 1.38636 * 120.00031 * 185.39566 * 16 15 14 19 19 N 1.31571 * 119.99756 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 119.99984 * 180.02562 * 18 16 15 21 21 H 1.48502 * 109.46876 * 0.02562 * 20 18 16 22 22 H 1.48498 * 109.46813 * 120.00326 * 20 18 16 23 23 H 1.48499 * 109.46975 * 240.00409 * 20 18 16 24 24 C 1.38910 * 120.01173 * 0.51002 * 14 13 12 25 25 C 1.38003 * 119.99995 * 359.76618 * 24 14 13 26 26 C 1.38659 * 119.95469 * 85.00362 * 3 2 1 27 27 O 1.35661 * 120.14912 * 359.97438 * 26 3 2 28 28 H 1.09008 * 109.47023 * 299.99328 * 1 2 3 29 29 H 1.09001 * 109.47803 * 59.99395 * 1 2 3 30 30 H 1.08992 * 109.47124 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.46624 * 240.00828 * 2 1 3 32 32 H 1.08997 * 109.47367 * 120.00382 * 2 1 3 33 33 H 1.08001 * 119.80379 * 0.02562 * 4 3 2 34 34 H 1.07999 * 119.84976 * 179.97438 * 5 4 3 35 35 H 1.08008 * 120.04574 * 180.30315 * 6 5 4 36 36 H 0.97000 * 120.00049 * 5.21975 * 10 8 7 37 37 H 1.08002 * 120.00463 * 0.02655 * 12 11 10 38 38 H 1.08000 * 119.99540 * 179.72177 * 13 12 11 39 39 H 0.96999 * 119.99957 * 180.02562 * 19 18 16 40 40 H 1.07996 * 120.00120 * 179.74818 * 24 14 13 41 41 H 1.07997 * 119.99785 * 179.97438 * 25 24 14 42 42 H 0.96706 * 113.99406 * 270.01302 * 27 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3609 2.0362 -1.1919 5 6 2.8239 3.3414 -1.2023 6 6 2.9552 4.0421 -0.0226 7 6 2.6324 3.4299 1.1906 8 6 2.7774 4.1715 2.4574 9 8 2.4906 3.6368 3.5113 10 7 3.2275 5.4418 2.4470 11 6 3.4690 6.1085 3.6532 12 6 3.9317 5.4024 4.7567 13 6 4.1638 6.0589 5.9482 14 6 3.9455 7.4276 6.0409 15 8 4.1789 8.0745 7.2117 16 6 3.8271 9.3744 7.2736 17 1 3.3026 9.8317 6.4477 18 6 4.1385 10.1240 8.3974 19 7 4.7777 9.5669 9.4034 20 14 3.6503 11.9251 8.4834 21 1 2.9462 12.3073 7.2330 22 1 2.7487 12.1387 9.6438 23 1 4.8676 12.7608 8.6418 24 6 3.4833 8.1338 4.9376 25 6 3.2456 7.4765 3.7477 26 6 2.1645 2.1085 1.1968 27 8 1.8420 1.5053 2.3684 28 1 -0.3633 0.5138 0.8901 29 1 -0.3635 0.5139 -0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8933 -0.5137 -0.8901 32 1 1.8934 -0.5139 0.8899 33 1 2.2562 1.4963 -2.1215 34 1 3.0787 3.8140 -2.1394 35 1 3.3120 5.0615 -0.0360 36 1 3.3841 5.8939 1.6032 37 1 4.1054 4.3390 4.6834 38 1 4.5192 5.5092 6.8072 39 1 4.9952 10.0913 10.1899 40 1 3.3097 9.1972 5.0111 41 1 2.8859 8.0255 2.8901 42 1 0.9188 1.6239 2.6307 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001319829026.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:41:24 Heat of formation + Delta-G solvation = -75.661746 kcal Electronic energy + Delta-G solvation = -26185.355129 eV Core-core repulsion = 22288.406712 eV Total energy + Delta-G solvation = -3896.948416 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.130 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.86904 -40.85054 -39.94840 -38.09564 -37.65088 -35.52514 -34.93319 -34.14743 -31.90760 -31.65359 -30.06536 -29.34145 -27.35300 -25.26609 -24.73687 -23.92795 -22.83825 -22.42250 -21.22465 -19.85542 -19.46297 -18.92284 -18.66314 -17.85390 -16.81843 -16.72936 -16.45073 -16.32631 -15.88450 -15.84438 -15.51377 -15.21531 -15.13152 -14.82065 -14.57809 -14.54264 -14.21859 -13.77854 -13.61576 -13.34530 -13.27866 -13.15719 -13.09257 -12.71347 -12.62310 -12.49767 -12.35511 -12.07688 -11.80636 -11.57780 -11.33034 -11.15694 -10.80290 -10.54750 -9.92464 -9.87806 -9.57043 -8.62060 -8.46033 -6.13338 -0.27582 0.25482 0.49548 0.57309 1.36936 1.44889 1.55813 1.83789 2.04022 2.19111 2.67692 2.83742 3.15360 3.26014 3.48751 3.58612 3.69520 3.96980 4.03244 4.09887 4.23156 4.28955 4.44394 4.46845 4.48670 4.58238 4.62557 4.70569 4.73008 4.96830 5.03547 5.06403 5.11936 5.15435 5.22323 5.27517 5.37487 5.38940 5.44007 5.51995 5.53306 5.65811 5.81196 6.01939 6.12792 6.48888 6.76294 6.98080 7.17375 7.78704 8.77576 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.031893 B = 0.002165 C = 0.002089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 877.727387 B =12930.871988 C =13399.753517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.080 4.080 3 C -0.126 4.126 4 C -0.071 4.071 5 C -0.128 4.128 6 C -0.075 4.075 7 C -0.184 4.184 8 C 0.547 3.453 9 O -0.551 6.551 10 N -0.646 5.646 11 C 0.064 3.936 12 C -0.073 4.073 13 C -0.188 4.188 14 C 0.109 3.891 15 O -0.231 6.231 16 C -0.411 4.411 17 H 0.107 0.893 18 C -0.027 4.027 19 N -0.922 5.922 20 Si 1.022 2.978 21 H -0.247 1.247 22 H -0.271 1.271 23 H -0.269 1.269 24 C -0.218 4.218 25 C -0.078 4.078 26 C 0.148 3.852 27 O -0.494 6.494 28 H 0.044 0.956 29 H 0.063 0.937 30 H 0.069 0.931 31 H 0.092 0.908 32 H 0.064 0.936 33 H 0.161 0.839 34 H 0.167 0.833 35 H 0.153 0.847 36 H 0.422 0.578 37 H 0.124 0.876 38 H 0.111 0.889 39 H 0.272 0.728 40 H 0.135 0.865 41 H 0.161 0.839 42 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.662 -12.888 -28.707 32.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.118 4.118 3 C -0.127 4.127 4 C -0.089 4.089 5 C -0.146 4.146 6 C -0.093 4.093 7 C -0.188 4.188 8 C 0.337 3.663 9 O -0.429 6.429 10 N -0.294 5.294 11 C -0.029 4.029 12 C -0.093 4.093 13 C -0.208 4.208 14 C 0.058 3.942 15 O -0.137 6.137 16 C -0.487 4.487 17 H 0.124 0.876 18 C -0.224 4.224 19 N -0.560 5.560 20 Si 0.841 3.159 21 H -0.170 1.170 22 H -0.197 1.197 23 H -0.194 1.194 24 C -0.237 4.237 25 C -0.098 4.098 26 C 0.101 3.899 27 O -0.307 6.307 28 H 0.063 0.937 29 H 0.082 0.918 30 H 0.088 0.912 31 H 0.111 0.889 32 H 0.083 0.917 33 H 0.179 0.821 34 H 0.184 0.816 35 H 0.171 0.829 36 H 0.262 0.738 37 H 0.142 0.858 38 H 0.130 0.870 39 H 0.081 0.919 40 H 0.152 0.848 41 H 0.178 0.822 42 H 0.259 0.741 Dipole moment (debyes) X Y Z Total from point charges -7.114 -13.502 -27.584 31.525 hybrid contribution -0.301 0.958 0.768 1.264 sum -7.415 -12.544 -26.816 30.519 Atomic orbital electron populations 1.21712 0.93956 1.02569 1.01913 1.20477 0.96735 0.90958 1.03601 1.20460 1.02060 0.98291 0.91844 1.21585 0.94558 0.95050 0.97718 1.21499 0.99606 0.94606 0.98855 1.21557 0.96388 1.00774 0.90599 1.20297 1.10191 0.95075 0.93245 1.18684 0.76616 0.81454 0.89500 1.90814 1.49791 1.68529 1.33784 1.43047 1.65240 1.13412 1.07682 1.17344 1.06180 0.91883 0.87515 1.20677 0.97529 0.99419 0.91710 1.20219 1.09790 0.91653 0.99158 1.19850 0.94981 0.92549 0.86833 1.83970 1.73921 1.25594 1.30237 1.21903 1.37661 0.83741 1.05412 0.87608 1.26660 0.96210 1.05503 0.93993 1.70213 1.39790 1.39038 1.06995 0.84483 0.78346 0.73576 0.79497 1.16999 1.19653 1.19390 1.21142 1.08494 1.01064 0.93028 1.20837 0.98880 0.92327 0.97762 1.18630 0.96307 0.88955 0.85963 1.84693 1.34252 1.74568 1.37143 0.93674 0.91801 0.91211 0.88911 0.91737 0.82102 0.81594 0.82922 0.73827 0.85826 0.87042 0.91879 0.84779 0.82170 0.74063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.45 9.89 71.98 0.71 -0.74 16 2 C -0.08 -0.97 5.78 29.85 0.17 -0.80 16 3 C -0.13 -1.93 5.14 -19.80 -0.10 -2.03 16 4 C -0.07 -0.72 9.66 22.30 0.22 -0.50 16 5 C -0.13 -1.19 10.02 22.24 0.22 -0.97 16 6 C -0.07 -1.02 9.53 22.52 0.21 -0.81 16 7 C -0.18 -4.09 5.89 -20.01 -0.12 -4.21 16 8 C 0.55 16.16 7.50 86.69 0.65 16.81 16 9 O -0.55 -21.08 12.87 16.85 0.22 -20.86 16 10 N -0.65 -16.96 5.28 -306.25 -1.62 -18.58 16 11 C 0.06 2.24 6.27 38.18 0.24 2.48 16 12 C -0.07 -3.02 8.64 22.38 0.19 -2.83 16 13 C -0.19 -8.92 9.98 22.37 0.22 -8.70 16 14 C 0.11 5.58 6.65 22.59 0.15 5.73 16 15 O -0.23 -14.14 9.75 -22.89 -0.22 -14.37 16 16 C -0.41 -23.93 9.44 67.92 0.64 -23.29 16 17 H 0.11 5.54 5.29 -2.91 -0.02 5.53 16 18 C -0.03 -1.51 5.49 84.83 0.47 -1.04 16 19 N -0.92 -57.31 13.67 21.61 0.30 -57.01 16 20 Si 1.02 42.72 29.55 68.60 2.03 44.75 16 21 H -0.25 -9.35 7.11 99.48 0.71 -8.65 16 22 H -0.27 -10.99 7.11 99.48 0.71 -10.29 16 23 H -0.27 -10.78 7.11 99.48 0.71 -10.08 16 24 C -0.22 -9.34 9.13 22.37 0.20 -9.14 16 25 C -0.08 -2.63 9.96 22.38 0.22 -2.41 16 26 C 0.15 3.24 6.69 22.84 0.15 3.40 16 27 O -0.49 -12.47 10.71 -68.86 -0.74 -13.21 16 28 H 0.04 0.53 8.14 -2.38 -0.02 0.51 16 29 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 30 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 31 H 0.09 0.74 8.05 -2.39 -0.02 0.72 16 32 H 0.06 1.00 7.69 -2.39 -0.02 0.98 16 33 H 0.16 0.61 8.06 -2.91 -0.02 0.58 16 34 H 0.17 0.43 8.06 -2.91 -0.02 0.40 16 35 H 0.15 1.25 6.42 -2.91 -0.02 1.23 16 36 H 0.42 7.19 6.86 -92.71 -0.64 6.56 16 37 H 0.12 5.14 6.43 -2.91 -0.02 5.12 16 38 H 0.11 5.31 8.06 -2.91 -0.02 5.29 16 39 H 0.27 15.45 8.31 -92.71 -0.77 14.68 16 40 H 0.13 5.63 5.71 -2.91 -0.02 5.62 16 41 H 0.16 3.84 8.06 -2.91 -0.02 3.82 16 42 H 0.40 7.76 9.06 -74.05 -0.67 7.09 16 Total: -1.00 -82.33 359.32 4.21 -78.13 By element: Atomic # 1 Polarization: 30.42 SS G_CDS: -0.22 Total: 30.20 kcal Atomic # 6 Polarization: -33.51 SS G_CDS: 4.46 Total: -29.05 kcal Atomic # 7 Polarization: -74.27 SS G_CDS: -1.32 Total: -75.59 kcal Atomic # 8 Polarization: -47.69 SS G_CDS: -0.74 Total: -48.43 kcal Atomic # 14 Polarization: 42.72 SS G_CDS: 2.03 Total: 44.75 kcal Total: -82.33 4.21 -78.13 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319829026.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.464 kcal (2) G-P(sol) polarization free energy of solvation -82.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.125 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds