Wall clock time and date at job start Tue Mar 31 2020 14:41:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50698 * 109.47119 * 2 1 4 4 C 1.38546 * 119.80508 * 270.02127 * 3 2 1 5 5 C 1.37786 * 120.30019 * 179.72239 * 4 3 2 6 6 C 1.39724 * 119.90717 * 0.53083 * 5 4 3 7 7 C 1.47504 * 120.19422 * 179.74868 * 6 5 4 8 8 O 1.21601 * 120.00130 * 179.72703 * 7 6 5 9 9 N 1.34772 * 119.99794 * 359.72163 * 7 6 5 10 10 C 1.39921 * 119.99889 * 175.48657 * 9 7 6 11 11 C 1.38937 * 120.00649 * 35.13578 * 10 9 7 12 12 C 1.37994 * 120.00154 * 180.02562 * 11 10 9 13 13 C 1.38910 * 120.00069 * 359.97438 * 12 11 10 14 14 O 1.35780 * 119.99663 * 179.97438 * 13 12 11 15 15 C 1.34812 * 116.99994 * 5.35542 * 14 13 12 16 16 H 1.07999 * 120.00060 * 354.96418 * 15 14 13 17 17 C 1.38633 * 119.99737 * 174.95709 * 15 14 13 18 18 N 1.31570 * 120.00195 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 119.99630 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.47089 * 90.00659 * 19 17 15 21 21 H 1.48503 * 109.47018 * 210.00329 * 19 17 15 22 22 H 1.48504 * 109.47505 * 330.00410 * 19 17 15 23 23 C 1.38911 * 120.00923 * 0.26372 * 13 12 11 24 24 C 1.38006 * 120.00099 * 359.48556 * 23 13 12 25 25 C 1.40154 * 119.61219 * 359.47368 * 6 5 4 26 26 O 1.35656 * 120.15017 * 180.23102 * 25 6 5 27 27 C 1.38068 * 119.80067 * 89.99998 * 3 2 1 28 28 H 1.08999 * 109.47538 * 299.99816 * 1 2 3 29 29 H 1.09001 * 109.46983 * 59.99846 * 1 2 3 30 30 H 1.09004 * 109.47097 * 179.97438 * 1 2 3 31 31 H 1.09007 * 109.47252 * 240.00235 * 2 1 3 32 32 H 1.09001 * 109.46983 * 120.00154 * 2 1 3 33 33 H 1.07995 * 119.84719 * 359.97438 * 4 3 2 34 34 H 1.07996 * 120.04825 * 180.25626 * 5 4 3 35 35 H 0.97001 * 120.00738 * 355.48487 * 9 7 6 36 36 H 1.08001 * 120.00000 * 359.97438 * 11 10 9 37 37 H 1.07998 * 120.00381 * 179.97438 * 12 11 10 38 38 H 0.97005 * 120.00135 * 179.97438 * 18 17 15 39 39 H 1.07997 * 120.00607 * 179.72043 * 23 13 12 40 40 H 1.08001 * 120.00445 * 180.23370 * 24 23 13 41 41 H 0.96701 * 114.00006 * 89.99701 * 26 25 6 42 42 H 1.07997 * 119.95438 * 0.02562 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2614 2.0702 -1.2022 5 6 2.7152 3.3711 -1.2141 6 6 2.9564 4.0359 -0.0090 7 6 3.4476 5.4267 -0.0144 8 8 3.6516 6.0036 1.0364 9 7 3.6704 6.0581 -1.1841 10 6 4.0453 7.4062 -1.1911 11 6 4.8625 7.9053 -0.1844 12 6 5.2318 9.2349 -0.1911 13 6 4.7869 10.0742 -1.2046 14 8 5.1499 11.3826 -1.2109 15 6 6.0309 11.7778 -0.2702 16 1 6.3525 11.0851 0.4935 17 6 6.5243 13.0733 -0.2832 18 7 6.1322 13.9172 -1.2133 19 14 7.7446 13.6211 1.0207 20 1 9.1269 13.3549 0.5479 21 1 7.5794 15.0751 1.2736 22 1 7.4977 12.8689 2.2771 23 6 3.9658 9.5766 -2.2085 24 6 3.6006 8.2457 -2.2049 25 6 2.7234 3.3754 1.2049 26 8 2.9494 4.0120 2.3813 27 6 2.2610 2.0677 1.1981 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8901 32 1 1.8933 -0.5139 0.8900 33 1 2.0796 1.5557 -2.1342 34 1 2.8885 3.8748 -2.1536 35 1 3.5709 5.5781 -2.0211 36 1 5.2081 7.2529 0.6038 37 1 5.8667 9.6230 0.5916 38 1 6.4772 14.8238 -1.2222 39 1 3.6162 10.2302 -2.9939 40 1 2.9652 7.8579 -2.9874 41 1 2.1821 4.4913 2.7229 42 1 2.0801 1.5547 2.1311 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001320750116.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:41:29 Heat of formation + Delta-G solvation = -52.840127 kcal Electronic energy + Delta-G solvation = -26007.024043 eV Core-core repulsion = 22111.065247 eV Total energy + Delta-G solvation = -3895.958796 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.130 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.76910 -39.46237 -38.43800 -37.27836 -36.36005 -34.46917 -33.68850 -32.16762 -30.58479 -30.20150 -29.85992 -27.78262 -25.40524 -24.80940 -22.98410 -22.59485 -22.01532 -21.25283 -20.07737 -18.61114 -17.97310 -17.68171 -17.10460 -16.59405 -15.85065 -15.76299 -15.21058 -14.96579 -14.51003 -14.41009 -14.24338 -13.94898 -13.93819 -13.66875 -13.54693 -13.42927 -12.95826 -12.85675 -12.52331 -12.24136 -11.97451 -11.77687 -11.69771 -11.54364 -11.50420 -11.39302 -11.00135 -10.83728 -10.72532 -10.41526 -9.66503 -9.64543 -9.24259 -9.14698 -8.91954 -8.67189 -8.18779 -6.91856 -6.42899 -4.00229 0.50359 0.92879 2.14374 2.25343 2.82142 3.15719 3.16996 3.21689 3.27236 3.53947 3.94379 3.99782 4.27388 4.37186 4.55513 4.65708 4.70098 4.84904 4.92103 5.02615 5.06435 5.11628 5.27281 5.36433 5.44292 5.45766 5.59051 5.68762 5.74569 5.77385 5.85558 5.95790 6.12710 6.16104 6.20028 6.36881 6.38952 6.74457 6.87950 7.02930 7.11630 7.32938 7.45933 7.52517 7.70967 7.79762 8.02467 8.38853 9.03025 9.72305 10.74995 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.030072 B = 0.002174 C = 0.002058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 930.874417 B =12878.983791 C =13600.101755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.089 4.089 3 C -0.044 4.044 4 C -0.137 4.137 5 C -0.069 4.069 6 C -0.165 4.165 7 C 0.548 3.452 8 O -0.508 6.508 9 N -0.657 5.657 10 C 0.034 3.966 11 C -0.063 4.063 12 C -0.220 4.220 13 C 0.147 3.853 14 O -0.177 6.177 15 C -0.390 4.390 16 H 0.093 0.907 17 C 0.039 3.961 18 N -0.863 5.863 19 Si 0.941 3.059 20 H -0.273 1.273 21 H -0.278 1.278 22 H -0.267 1.267 23 C -0.178 4.178 24 C -0.093 4.093 25 C 0.173 3.827 26 O -0.477 6.477 27 C -0.156 4.156 28 H 0.057 0.943 29 H 0.058 0.942 30 H 0.060 0.940 31 H 0.076 0.924 32 H 0.075 0.925 33 H 0.130 0.870 34 H 0.131 0.869 35 H 0.399 0.601 36 H 0.126 0.874 37 H 0.131 0.869 38 H 0.270 0.730 39 H 0.122 0.878 40 H 0.114 0.886 41 H 0.397 0.603 42 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.261 -26.613 -0.105 28.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.126 4.126 3 C -0.045 4.045 4 C -0.155 4.155 5 C -0.088 4.088 6 C -0.168 4.168 7 C 0.336 3.664 8 O -0.384 6.384 9 N -0.302 5.302 10 C -0.059 4.059 11 C -0.083 4.083 12 C -0.240 4.240 13 C 0.093 3.907 14 O -0.080 6.080 15 C -0.466 4.466 16 H 0.110 0.890 17 C -0.165 4.165 18 N -0.498 5.498 19 Si 0.765 3.235 20 H -0.199 1.199 21 H -0.203 1.203 22 H -0.191 1.191 23 C -0.198 4.198 24 C -0.113 4.113 25 C 0.126 3.874 26 O -0.288 6.288 27 C -0.174 4.174 28 H 0.076 0.924 29 H 0.077 0.923 30 H 0.079 0.921 31 H 0.095 0.905 32 H 0.094 0.906 33 H 0.148 0.852 34 H 0.148 0.852 35 H 0.234 0.766 36 H 0.144 0.856 37 H 0.148 0.852 38 H 0.079 0.921 39 H 0.140 0.860 40 H 0.132 0.868 41 H 0.255 0.745 42 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -9.596 -25.979 0.420 27.698 hybrid contribution 0.128 0.237 0.251 0.368 sum -9.468 -25.743 0.671 27.437 Atomic orbital electron populations 1.21753 0.94283 1.01999 1.02465 1.20630 0.96486 0.92140 1.03369 1.19958 0.95799 0.96129 0.92565 1.20953 1.01886 0.94757 0.97888 1.21243 0.96133 0.94619 0.96764 1.20453 1.07221 0.95064 0.94097 1.18068 0.78601 0.85645 0.84116 1.90814 1.50086 1.66488 1.30987 1.43097 1.68228 1.10447 1.08424 1.17235 1.04691 0.82916 1.01025 1.20881 0.94668 0.95322 0.97415 1.21113 1.07374 0.93701 1.01827 1.19418 0.93177 0.85239 0.92908 1.83972 1.54632 1.18450 1.50928 1.21343 1.20955 0.97384 1.06936 0.88999 1.25284 0.98109 0.94956 0.98193 1.70046 1.41793 1.05653 1.32300 0.85711 0.79702 0.78273 0.79776 1.19878 1.20274 1.19129 1.19982 1.04695 0.94697 1.00450 1.20353 0.99983 0.92578 0.98366 1.18469 0.93386 0.90579 0.84945 1.84747 1.40699 1.69060 1.34315 1.21305 1.02613 0.94811 0.98715 0.92410 0.92334 0.92145 0.90530 0.90649 0.85218 0.85155 0.76570 0.85612 0.85174 0.92050 0.86041 0.86767 0.74510 0.84846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.68 9.89 37.16 0.37 -0.31 16 2 C -0.09 -0.45 6.05 -27.89 -0.17 -0.62 16 3 C -0.04 -0.33 5.14 -104.57 -0.54 -0.87 16 4 C -0.14 -1.01 9.67 -39.63 -0.38 -1.39 16 5 C -0.07 -0.61 9.53 -39.19 -0.37 -0.98 16 6 C -0.16 -1.98 5.89 -104.85 -0.62 -2.60 16 7 C 0.55 8.48 7.61 -12.49 -0.09 8.38 16 8 O -0.51 -9.71 12.59 -16.60 -0.21 -9.92 16 9 N -0.66 -9.48 5.28 -10.77 -0.06 -9.54 16 10 C 0.03 0.61 6.30 -83.65 -0.53 0.09 16 11 C -0.06 -1.31 8.69 -39.41 -0.34 -1.65 16 12 C -0.22 -5.09 9.16 -39.42 -0.36 -5.45 16 13 C 0.15 3.61 6.65 -39.08 -0.26 3.35 16 14 O -0.18 -5.09 9.75 0.01 0.00 -5.09 16 15 C -0.39 -11.08 9.48 30.88 0.29 -10.79 16 16 H 0.09 2.44 5.20 -52.49 -0.27 2.17 16 17 C 0.04 1.08 5.49 -17.52 -0.10 0.98 16 18 N -0.86 -25.48 13.67 55.48 0.76 -24.72 16 19 Si 0.94 20.93 29.55 -169.99 -5.02 15.91 16 20 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 21 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 22 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 23 C -0.18 -3.75 9.98 -39.42 -0.39 -4.14 16 24 C -0.09 -1.64 9.96 -39.41 -0.39 -2.03 16 25 C 0.17 2.00 6.72 -38.69 -0.26 1.74 16 26 O -0.48 -5.99 11.58 -40.55 -0.47 -6.46 16 27 C -0.16 -1.39 9.62 -39.47 -0.38 -1.77 16 28 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16 29 H 0.06 0.28 8.14 -51.93 -0.42 -0.15 16 30 H 0.06 0.22 8.14 -51.93 -0.42 -0.21 16 31 H 0.08 0.32 8.08 -51.92 -0.42 -0.10 16 32 H 0.07 0.35 8.08 -51.93 -0.42 -0.07 16 33 H 0.13 0.64 8.06 -52.49 -0.42 0.22 16 34 H 0.13 0.85 6.42 -52.49 -0.34 0.51 16 35 H 0.40 4.20 6.87 -40.82 -0.28 3.92 16 36 H 0.13 2.64 6.22 -52.49 -0.33 2.31 16 37 H 0.13 3.03 5.63 -52.49 -0.30 2.73 16 38 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 39 H 0.12 2.41 8.06 -52.49 -0.42 1.99 16 40 H 0.11 1.58 8.06 -52.49 -0.42 1.16 16 41 H 0.40 3.53 9.06 45.56 0.41 3.94 16 42 H 0.13 0.97 8.06 -52.49 -0.42 0.55 16 LS Contribution 360.10 15.07 5.43 5.43 Total: -1.00 -35.01 360.10 -8.13 -43.14 By element: Atomic # 1 Polarization: 13.35 SS G_CDS: -4.03 Total: 9.32 kcal Atomic # 6 Polarization: -13.54 SS G_CDS: -4.53 Total: -18.07 kcal Atomic # 7 Polarization: -34.96 SS G_CDS: 0.70 Total: -34.26 kcal Atomic # 8 Polarization: -20.79 SS G_CDS: -0.68 Total: -21.47 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -35.01 -8.13 -43.14 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320750116.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.699 kcal (2) G-P(sol) polarization free energy of solvation -35.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.142 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds