Wall clock time and date at job start Tue Mar 31 2020 15:49:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50706 * 120.00269 * 2 1 4 4 N 1.46494 * 109.47039 * 124.99841 * 3 2 1 5 5 C 1.46504 * 120.00313 * 269.99657 * 4 3 2 6 6 C 1.50691 * 109.47335 * 270.00565 * 5 4 3 7 7 H 1.08001 * 120.00449 * 359.97438 * 6 5 4 8 8 C 1.37879 * 120.00272 * 179.97438 * 6 5 4 9 9 N 1.31520 * 119.99699 * 0.02562 * 8 6 5 10 10 Si 1.86798 * 120.00223 * 179.97438 * 8 6 5 11 11 H 1.48499 * 109.47087 * 60.00442 * 10 8 6 12 12 H 1.48504 * 109.47169 * 180.02562 * 10 8 6 13 13 H 1.48504 * 109.47252 * 299.99975 * 10 8 6 14 14 C 1.34777 * 120.00013 * 90.00470 * 4 3 2 15 15 O 1.21285 * 120.00158 * 179.97438 * 14 4 3 16 16 C 1.50703 * 120.00222 * 359.97438 * 14 4 3 17 17 H 1.08999 * 115.55665 * 304.18212 * 16 14 4 18 18 C 1.52975 * 117.49892 * 158.50032 * 16 14 4 19 19 C 1.53090 * 60.03786 * 252.50682 * 18 16 14 20 20 C 1.52926 * 117.33670 * 252.71934 * 19 18 16 21 21 C 1.53029 * 109.70536 * 278.65186 * 20 19 18 22 22 S 1.81559 * 109.24439 * 299.31972 * 21 20 19 23 23 O 1.42098 * 108.62638 * 171.18385 * 22 21 20 24 24 O 1.42100 * 108.62709 * 302.34037 * 22 21 20 25 25 C 1.81562 * 101.56434 * 56.79088 * 22 21 20 26 26 C 1.52924 * 117.39763 * 107.29544 * 19 18 16 27 27 H 1.08003 * 119.99495 * 359.97438 * 1 2 3 28 28 H 1.07995 * 119.99880 * 180.02562 * 1 2 3 29 29 H 1.08004 * 120.00161 * 179.97438 * 2 1 3 30 30 H 1.08998 * 109.47141 * 4.99787 * 3 2 1 31 31 H 1.09003 * 109.47110 * 244.99840 * 3 2 1 32 32 H 1.09001 * 109.46346 * 30.00618 * 5 4 3 33 33 H 1.08994 * 109.47349 * 150.00091 * 5 4 3 34 34 H 0.96997 * 120.00154 * 179.97438 * 9 8 6 35 35 H 1.09000 * 117.49222 * 145.00361 * 18 16 14 36 36 H 1.08996 * 117.50905 * 0.02562 * 18 16 14 37 37 H 1.09003 * 109.38368 * 158.61551 * 20 19 18 38 38 H 1.08996 * 109.48374 * 38.75158 * 20 19 18 39 39 H 1.09000 * 109.51371 * 179.37277 * 21 20 19 40 40 H 1.09003 * 109.51643 * 59.27023 * 21 20 19 41 41 H 1.09003 * 109.51489 * 63.09438 * 25 22 21 42 42 H 1.08994 * 109.51751 * 183.20602 * 25 22 21 43 43 H 1.09001 * 109.43312 * 321.19165 * 26 19 18 44 44 H 1.08993 * 109.39148 * 201.30694 * 26 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 7 2.9938 1.3319 1.1314 5 6 2.5589 1.8650 2.4249 6 6 2.8443 3.3436 2.4804 7 1 3.3041 3.8369 1.6368 8 6 2.5186 4.0668 3.6082 9 7 1.9592 3.4660 4.6357 10 14 2.8730 5.8995 3.6772 11 1 2.1381 6.5873 2.5854 12 1 2.4321 6.4399 4.9883 13 1 4.3311 6.1283 3.5132 14 6 4.2497 0.8661 0.9824 15 8 5.0200 0.8887 1.9190 16 6 4.6970 0.3173 -0.3480 17 1 4.0881 -0.4915 -0.7517 18 6 6.2009 0.2754 -0.6252 19 6 5.3191 1.2993 -1.3447 20 6 5.0377 1.0637 -2.8293 21 6 6.2198 1.5616 -3.6638 22 16 6.4434 3.3413 -3.3825 23 8 7.6587 3.7486 -3.9960 24 8 5.2360 4.0096 -3.7212 25 6 6.6552 3.4011 -1.5803 26 6 5.4384 2.7603 -0.9091 27 1 -0.5399 0.9354 0.0004 28 1 -0.5400 -0.9353 0.0004 29 1 1.8500 -0.9353 0.0004 30 1 1.3587 2.1317 0.0895 31 1 2.6214 1.4026 -0.9314 32 1 1.4888 1.6967 2.5459 33 1 3.0989 1.3604 3.2260 34 1 1.7303 3.9746 5.4293 35 1 6.5814 -0.5612 -1.2112 36 1 6.8670 0.6443 0.1547 37 1 4.1368 1.6055 -3.1172 38 1 4.8917 -0.0018 -3.0070 39 1 6.0208 1.3821 -4.7204 40 1 7.1241 1.0297 -3.3682 41 1 7.5555 2.8536 -1.3011 42 1 6.7454 4.4385 -1.2584 43 1 5.5546 2.8075 0.1737 44 1 4.5373 3.2996 -1.2010 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001347716107.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:49:09 Heat of formation + Delta-G solvation = -61.866728 kcal Electronic energy + Delta-G solvation = -27145.948428 eV Core-core repulsion = 23385.042160 eV Total energy + Delta-G solvation = -3760.906268 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.24239 -37.87751 -37.04862 -36.14479 -35.70256 -33.28820 -32.72099 -32.18894 -32.06351 -27.89035 -25.76258 -25.37277 -24.33629 -23.95154 -21.85415 -20.04439 -19.76923 -18.67597 -18.21235 -16.97456 -16.59097 -16.53089 -16.49826 -15.87767 -15.56954 -15.27684 -14.72057 -14.49086 -14.15573 -13.98504 -13.88253 -13.37821 -13.14847 -12.96446 -12.78927 -12.35273 -12.24075 -12.22469 -12.10685 -12.06961 -11.85053 -11.64271 -11.39969 -11.32152 -11.09976 -10.97126 -10.93732 -10.63795 -10.30221 -10.19928 -10.16374 -10.04074 -9.68744 -9.21717 -8.99977 -8.46251 -7.75171 -6.07639 -4.12692 -0.11808 2.41279 2.51905 2.97885 3.29584 3.34221 3.36101 3.49319 3.56667 3.80079 4.00623 4.27814 4.31368 4.40742 4.48065 4.49232 4.66630 4.76247 4.95319 5.03155 5.07141 5.21407 5.26910 5.35695 5.36044 5.43318 5.49394 5.56389 5.63567 5.71356 5.78803 5.89421 5.99797 6.06309 6.17936 6.20182 6.76068 6.87675 7.04450 7.39813 7.49297 7.88223 8.18858 8.34331 8.84474 9.01377 9.52528 11.00445 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.011240 B = 0.004686 C = 0.003879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2490.446075 B = 5974.128557 C = 7216.798259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.168 4.168 3 C 0.135 3.865 4 N -0.586 5.586 5 C 0.247 3.753 6 C -0.527 4.527 7 H 0.058 0.942 8 C 0.063 3.937 9 N -0.894 5.894 10 Si 0.895 3.105 11 H -0.276 1.276 12 H -0.286 1.286 13 H -0.277 1.277 14 C 0.533 3.467 15 O -0.537 6.537 16 C -0.158 4.158 17 H 0.125 0.875 18 C -0.140 4.140 19 C -0.139 4.139 20 C -0.069 4.069 21 C -0.600 4.600 22 S 2.414 3.586 23 O -0.950 6.950 24 O -0.936 6.936 25 C -0.593 4.593 26 C -0.080 4.080 27 H 0.099 0.901 28 H 0.093 0.907 29 H 0.103 0.897 30 H 0.087 0.913 31 H 0.078 0.922 32 H 0.033 0.967 33 H 0.043 0.957 34 H 0.264 0.736 35 H 0.103 0.897 36 H 0.111 0.889 37 H 0.092 0.908 38 H 0.090 0.910 39 H 0.134 0.866 40 H 0.134 0.866 41 H 0.133 0.867 42 H 0.137 0.863 43 H 0.102 0.898 44 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.829 -7.614 -16.680 18.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.188 4.188 3 C 0.011 3.989 4 N -0.316 5.316 5 C 0.128 3.872 6 C -0.566 4.566 7 H 0.076 0.924 8 C -0.139 4.139 9 N -0.532 5.532 10 Si 0.723 3.277 11 H -0.201 1.201 12 H -0.212 1.212 13 H -0.202 1.202 14 C 0.319 3.681 15 O -0.415 6.415 16 C -0.179 4.179 17 H 0.143 0.857 18 C -0.177 4.177 19 C -0.140 4.140 20 C -0.107 4.107 21 C -0.729 4.729 22 S 2.597 3.403 23 O -0.947 6.947 24 O -0.933 6.933 25 C -0.722 4.722 26 C -0.118 4.118 27 H 0.118 0.882 28 H 0.112 0.888 29 H 0.121 0.879 30 H 0.106 0.894 31 H 0.096 0.904 32 H 0.051 0.949 33 H 0.061 0.939 34 H 0.074 0.926 35 H 0.121 0.879 36 H 0.129 0.871 37 H 0.110 0.890 38 H 0.108 0.892 39 H 0.152 0.848 40 H 0.152 0.848 41 H 0.152 0.848 42 H 0.155 0.845 43 H 0.121 0.879 44 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 5.161 -6.838 -16.583 18.665 hybrid contribution 0.084 0.234 0.708 0.750 sum 5.245 -6.604 -15.875 17.977 Atomic orbital electron populations 1.23825 0.95878 1.01776 1.00509 1.23414 0.96373 0.98988 0.99978 1.20609 0.93089 0.95285 0.89914 1.48161 1.10299 1.59523 1.13585 1.19292 0.95466 0.93784 0.78629 1.21366 1.40769 0.93212 1.01246 0.92411 1.24917 0.95029 0.98636 0.95362 1.69921 1.41866 1.36264 1.05180 0.86609 0.78821 0.85034 0.77270 1.20140 1.21170 1.20218 1.19341 0.82469 0.78380 0.87937 1.90688 1.52874 1.56427 1.41501 1.22499 0.97989 1.01627 0.95778 0.85722 1.23153 0.92604 0.99908 1.02066 1.21775 1.06530 0.92887 0.92797 1.20834 0.96039 1.03937 0.89928 1.30127 1.08078 1.25438 1.09268 1.08095 0.75220 0.78326 0.78698 1.93579 1.46510 1.80418 1.74226 1.93593 1.46591 1.71091 1.82004 1.30094 1.07750 1.10601 1.23789 1.20918 0.95712 0.91467 1.03705 0.88248 0.88828 0.87905 0.89418 0.90434 0.94934 0.93941 0.92647 0.87875 0.87113 0.88951 0.89174 0.84806 0.84809 0.84824 0.84510 0.87919 0.88856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.24 14.32 29.01 0.42 -1.83 16 2 C -0.17 -2.24 9.85 -36.02 -0.35 -2.59 16 3 C 0.13 2.06 5.67 -5.19 -0.03 2.03 16 4 N -0.59 -11.51 2.44 -176.44 -0.43 -11.95 16 5 C 0.25 6.21 5.16 -5.20 -0.03 6.18 16 6 C -0.53 -14.31 9.39 -34.44 -0.32 -14.64 16 7 H 0.06 1.54 7.81 -52.49 -0.41 1.13 16 8 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 9 N -0.89 -26.06 13.29 55.43 0.74 -25.32 16 10 Si 0.90 21.44 29.54 -169.99 -5.02 16.42 16 11 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 12 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 13 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 14 C 0.53 10.09 5.75 -10.98 -0.06 10.03 16 15 O -0.54 -12.63 16.02 5.55 0.09 -12.54 16 16 C -0.16 -2.03 4.09 -91.72 -0.38 -2.41 16 17 H 0.12 1.31 8.14 -51.93 -0.42 0.89 16 18 C -0.14 -1.51 9.47 -26.70 -0.25 -1.76 16 19 C -0.14 -1.48 1.44 -154.48 -0.22 -1.71 16 20 C -0.07 -0.54 5.41 -26.75 -0.14 -0.68 16 21 C -0.60 -4.05 6.35 37.17 0.24 -3.81 16 22 S 2.41 24.43 5.27 -107.50 -0.57 23.87 16 23 O -0.95 -12.53 18.10 -57.82 -1.05 -13.57 16 24 O -0.94 -12.73 17.92 -57.82 -1.04 -13.76 16 25 C -0.59 -5.94 6.35 37.17 0.24 -5.71 16 26 C -0.08 -1.02 5.00 -26.75 -0.13 -1.15 16 27 H 0.10 1.22 7.84 -52.48 -0.41 0.81 16 28 H 0.09 0.99 8.06 -52.49 -0.42 0.57 16 29 H 0.10 1.26 8.06 -52.48 -0.42 0.84 16 30 H 0.09 1.42 7.72 -51.93 -0.40 1.02 16 31 H 0.08 0.98 6.60 -51.93 -0.34 0.64 16 32 H 0.03 0.84 8.07 -51.93 -0.42 0.42 16 33 H 0.04 1.22 7.42 -51.93 -0.39 0.83 16 34 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 35 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.11 1.39 7.83 -51.93 -0.41 0.99 16 37 H 0.09 0.72 8.11 -51.93 -0.42 0.30 16 38 H 0.09 0.54 8.09 -51.93 -0.42 0.12 16 39 H 0.13 0.67 8.14 -51.93 -0.42 0.24 16 40 H 0.13 0.65 8.14 -51.92 -0.42 0.23 16 41 H 0.13 1.06 8.14 -51.92 -0.42 0.64 16 42 H 0.14 1.30 8.14 -51.93 -0.42 0.88 16 43 H 0.10 1.66 6.92 -51.93 -0.36 1.30 16 44 H 0.09 1.22 8.10 -51.93 -0.42 0.80 16 LS Contribution 375.41 15.07 5.66 5.66 Total: -1.00 -36.59 375.41 -9.67 -46.26 By element: Atomic # 1 Polarization: 8.25 SS G_CDS: -6.92 Total: 1.34 kcal Atomic # 6 Polarization: -15.26 SS G_CDS: -1.14 Total: -16.40 kcal Atomic # 7 Polarization: -37.57 SS G_CDS: 0.31 Total: -37.26 kcal Atomic # 8 Polarization: -37.89 SS G_CDS: -1.99 Total: -39.88 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Atomic # 16 Polarization: 24.43 SS G_CDS: -0.57 Total: 23.87 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -36.59 -9.67 -46.26 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001347716107.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.609 kcal (2) G-P(sol) polarization free energy of solvation -36.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.258 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds