Wall clock time and date at job start Tue Mar 31 2020 15:49:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50706 * 120.00269 * 2 1 4 4 N 1.46494 * 109.47039 * 124.99841 * 3 2 1 5 5 C 1.46504 * 120.00313 * 269.99657 * 4 3 2 6 6 C 1.50691 * 109.47335 * 270.00565 * 5 4 3 7 7 H 1.08001 * 120.00449 * 359.97438 * 6 5 4 8 8 C 1.37879 * 120.00272 * 179.97438 * 6 5 4 9 9 N 1.31520 * 119.99699 * 0.02562 * 8 6 5 10 10 Si 1.86798 * 120.00223 * 179.97438 * 8 6 5 11 11 H 1.48499 * 109.47087 * 60.00442 * 10 8 6 12 12 H 1.48504 * 109.47169 * 180.02562 * 10 8 6 13 13 H 1.48504 * 109.47252 * 299.99975 * 10 8 6 14 14 C 1.34777 * 120.00013 * 90.00470 * 4 3 2 15 15 O 1.21285 * 120.00158 * 179.97438 * 14 4 3 16 16 C 1.50703 * 120.00222 * 359.97438 * 14 4 3 17 17 H 1.08999 * 115.55665 * 304.18212 * 16 14 4 18 18 C 1.52975 * 117.49892 * 158.50032 * 16 14 4 19 19 C 1.53090 * 60.03786 * 252.50682 * 18 16 14 20 20 C 1.52926 * 117.33670 * 252.71934 * 19 18 16 21 21 C 1.53029 * 109.70536 * 278.65186 * 20 19 18 22 22 S 1.81559 * 109.24439 * 299.31972 * 21 20 19 23 23 O 1.42098 * 108.62638 * 171.18385 * 22 21 20 24 24 O 1.42100 * 108.62709 * 302.34037 * 22 21 20 25 25 C 1.81562 * 101.56434 * 56.79088 * 22 21 20 26 26 C 1.52924 * 117.39763 * 107.29544 * 19 18 16 27 27 H 1.08003 * 119.99495 * 359.97438 * 1 2 3 28 28 H 1.07995 * 119.99880 * 180.02562 * 1 2 3 29 29 H 1.08004 * 120.00161 * 179.97438 * 2 1 3 30 30 H 1.08998 * 109.47141 * 4.99787 * 3 2 1 31 31 H 1.09003 * 109.47110 * 244.99840 * 3 2 1 32 32 H 1.09001 * 109.46346 * 30.00618 * 5 4 3 33 33 H 1.08994 * 109.47349 * 150.00091 * 5 4 3 34 34 H 0.96997 * 120.00154 * 179.97438 * 9 8 6 35 35 H 1.09000 * 117.49222 * 145.00361 * 18 16 14 36 36 H 1.08996 * 117.50905 * 0.02562 * 18 16 14 37 37 H 1.09003 * 109.38368 * 158.61551 * 20 19 18 38 38 H 1.08996 * 109.48374 * 38.75158 * 20 19 18 39 39 H 1.09000 * 109.51371 * 179.37277 * 21 20 19 40 40 H 1.09003 * 109.51643 * 59.27023 * 21 20 19 41 41 H 1.09003 * 109.51489 * 63.09438 * 25 22 21 42 42 H 1.08994 * 109.51751 * 183.20602 * 25 22 21 43 43 H 1.09001 * 109.43312 * 321.19165 * 26 19 18 44 44 H 1.08993 * 109.39148 * 201.30694 * 26 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 7 2.9938 1.3319 1.1314 5 6 2.5589 1.8650 2.4249 6 6 2.8443 3.3436 2.4804 7 1 3.3041 3.8369 1.6368 8 6 2.5186 4.0668 3.6082 9 7 1.9592 3.4660 4.6357 10 14 2.8730 5.8995 3.6772 11 1 2.1381 6.5873 2.5854 12 1 2.4321 6.4399 4.9883 13 1 4.3311 6.1283 3.5132 14 6 4.2497 0.8661 0.9824 15 8 5.0200 0.8887 1.9190 16 6 4.6970 0.3173 -0.3480 17 1 4.0881 -0.4915 -0.7517 18 6 6.2009 0.2754 -0.6252 19 6 5.3191 1.2993 -1.3447 20 6 5.0377 1.0637 -2.8293 21 6 6.2198 1.5616 -3.6638 22 16 6.4434 3.3413 -3.3825 23 8 7.6587 3.7486 -3.9960 24 8 5.2360 4.0096 -3.7212 25 6 6.6552 3.4011 -1.5803 26 6 5.4384 2.7603 -0.9091 27 1 -0.5399 0.9354 0.0004 28 1 -0.5400 -0.9353 0.0004 29 1 1.8500 -0.9353 0.0004 30 1 1.3587 2.1317 0.0895 31 1 2.6214 1.4026 -0.9314 32 1 1.4888 1.6967 2.5459 33 1 3.0989 1.3604 3.2260 34 1 1.7303 3.9746 5.4293 35 1 6.5814 -0.5612 -1.2112 36 1 6.8670 0.6443 0.1547 37 1 4.1368 1.6055 -3.1172 38 1 4.8917 -0.0018 -3.0070 39 1 6.0208 1.3821 -4.7204 40 1 7.1241 1.0297 -3.3682 41 1 7.5555 2.8536 -1.3011 42 1 6.7454 4.4385 -1.2584 43 1 5.5546 2.8075 0.1737 44 1 4.5373 3.2996 -1.2010 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001347716107.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:49:08 Heat of formation + Delta-G solvation = -88.241468 kcal Electronic energy + Delta-G solvation = -27147.092123 eV Core-core repulsion = 23385.042160 eV Total energy + Delta-G solvation = -3762.049962 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.44159 -39.09191 -37.97158 -37.17439 -37.04845 -35.11912 -33.64813 -33.60774 -32.93048 -29.78414 -26.96536 -26.31322 -25.93279 -24.75636 -23.41989 -21.09845 -20.69992 -19.70517 -19.31819 -18.63900 -17.95015 -17.71211 -17.31213 -17.24117 -16.67256 -16.35315 -16.26234 -15.87936 -15.20322 -15.12844 -14.89973 -14.42784 -14.16133 -14.11205 -13.93711 -13.91443 -13.38443 -13.26615 -13.16406 -13.05272 -12.97142 -12.89028 -12.86803 -12.74125 -12.61170 -12.25086 -12.19921 -12.16759 -11.80738 -11.69135 -11.16859 -10.99183 -10.94079 -10.65689 -10.50645 -10.27697 -9.44749 -8.23640 -6.37569 -0.88527 1.33503 1.35560 1.36503 1.43849 1.70891 1.78219 2.29585 2.44909 2.61109 2.76801 3.06203 3.12700 3.43214 3.54420 3.61115 3.70003 3.80945 3.93556 4.02215 4.17686 4.22834 4.30262 4.33635 4.45209 4.53174 4.68117 4.81099 4.87514 4.88726 4.93344 4.97872 5.01361 5.08558 5.13441 5.14553 5.23247 5.30851 5.53329 5.73471 5.77484 5.98917 6.05754 6.69748 6.80947 7.27992 7.50040 8.83310 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.011240 B = 0.004686 C = 0.003879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2490.446075 B = 5974.128557 C = 7216.798259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.179 4.179 3 C 0.132 3.868 4 N -0.592 5.592 5 C 0.265 3.735 6 C -0.538 4.538 7 H 0.055 0.945 8 C 0.011 3.989 9 N -0.927 5.927 10 Si 0.958 3.042 11 H -0.262 1.262 12 H -0.278 1.278 13 H -0.278 1.278 14 C 0.525 3.475 15 O -0.598 6.598 16 C -0.170 4.170 17 H 0.162 0.838 18 C -0.128 4.128 19 C -0.124 4.124 20 C -0.070 4.070 21 C -0.571 4.571 22 S 2.418 3.582 23 O -0.984 6.984 24 O -0.978 6.978 25 C -0.596 4.596 26 C -0.085 4.085 27 H 0.094 0.906 28 H 0.117 0.883 29 H 0.120 0.880 30 H 0.070 0.930 31 H 0.109 0.891 32 H 0.018 0.982 33 H -0.005 1.005 34 H 0.266 0.734 35 H 0.151 0.849 36 H 0.084 0.916 37 H 0.094 0.906 38 H 0.131 0.869 39 H 0.167 0.833 40 H 0.167 0.833 41 H 0.154 0.846 42 H 0.130 0.870 43 H 0.056 0.944 44 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.218 -9.474 -20.082 22.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.198 4.198 3 C 0.010 3.990 4 N -0.321 5.321 5 C 0.143 3.857 6 C -0.577 4.577 7 H 0.073 0.927 8 C -0.188 4.188 9 N -0.567 5.567 10 Si 0.783 3.217 11 H -0.186 1.186 12 H -0.203 1.203 13 H -0.203 1.203 14 C 0.314 3.686 15 O -0.479 6.479 16 C -0.191 4.191 17 H 0.180 0.820 18 C -0.165 4.165 19 C -0.125 4.125 20 C -0.108 4.108 21 C -0.704 4.704 22 S 2.605 3.395 23 O -0.982 6.982 24 O -0.975 6.975 25 C -0.725 4.725 26 C -0.124 4.124 27 H 0.112 0.888 28 H 0.135 0.865 29 H 0.138 0.862 30 H 0.088 0.912 31 H 0.127 0.873 32 H 0.036 0.964 33 H 0.013 0.987 34 H 0.075 0.925 35 H 0.169 0.831 36 H 0.102 0.898 37 H 0.113 0.887 38 H 0.149 0.851 39 H 0.185 0.815 40 H 0.185 0.815 41 H 0.172 0.828 42 H 0.148 0.852 43 H 0.075 0.925 44 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 5.534 -8.657 -20.022 22.504 hybrid contribution -0.065 0.767 1.820 1.977 sum 5.469 -7.890 -18.202 20.578 Atomic orbital electron populations 1.24039 0.95725 1.02707 0.98678 1.23340 0.96645 0.98325 1.01536 1.20818 0.92596 0.96217 0.89339 1.48119 1.11822 1.59368 1.12774 1.18662 0.93724 0.92656 0.80618 1.21659 1.40370 0.94397 1.01262 0.92715 1.25780 0.94788 1.03270 0.94997 1.70041 1.42880 1.38023 1.05760 0.85607 0.78522 0.79663 0.77910 1.18635 1.20333 1.20325 1.20426 0.81235 0.77036 0.89858 1.90645 1.54247 1.58746 1.44279 1.22448 1.00288 1.03491 0.92846 0.82018 1.23332 0.90649 1.00993 1.01500 1.21837 1.05333 0.90764 0.94516 1.20993 0.96406 1.06605 0.86819 1.29931 1.09365 1.19847 1.11276 1.07781 0.73619 0.80551 0.77573 1.93535 1.47621 1.82524 1.74478 1.93538 1.47736 1.73893 1.82321 1.30115 1.07421 1.10538 1.24423 1.20838 0.96544 0.93916 1.01091 0.88783 0.86484 0.86189 0.91166 0.87335 0.96354 0.98660 0.92475 0.83071 0.89773 0.88706 0.85059 0.81496 0.81530 0.82750 0.85164 0.92546 0.90026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.97 14.32 67.78 0.97 -3.00 16 2 C -0.18 -4.46 9.85 25.65 0.25 -4.21 16 3 C 0.13 4.00 5.67 85.64 0.49 4.49 16 4 N -0.59 -24.17 2.44 -830.51 -2.03 -26.20 16 5 C 0.26 14.19 5.16 85.63 0.44 14.63 16 6 C -0.54 -30.78 9.39 25.60 0.24 -30.54 16 7 H 0.05 3.08 7.81 -2.91 -0.02 3.05 16 8 C 0.01 0.62 5.46 84.65 0.46 1.08 16 9 N -0.93 -56.26 13.29 21.45 0.28 -55.98 16 10 Si 0.96 45.20 29.54 68.60 2.03 47.23 16 11 H -0.26 -11.68 7.11 99.48 0.71 -10.97 16 12 H -0.28 -12.70 7.11 99.48 0.71 -12.00 16 13 H -0.28 -13.05 7.11 99.48 0.71 -12.35 16 14 C 0.53 20.46 5.75 87.66 0.50 20.97 16 15 O -0.60 -29.91 16.02 -3.05 -0.05 -29.96 16 16 C -0.17 -3.98 4.09 -11.51 -0.05 -4.03 16 17 H 0.16 2.60 8.14 -2.39 -0.02 2.58 16 18 C -0.13 -2.33 9.47 30.62 0.29 -2.04 16 19 C -0.12 -2.28 1.44 -52.16 -0.08 -2.36 16 20 C -0.07 -0.69 5.41 30.58 0.17 -0.52 16 21 C -0.57 -4.46 6.35 71.99 0.46 -4.01 16 22 S 2.42 44.56 5.27 -56.49 -0.30 44.26 16 23 O -0.98 -24.59 18.10 -127.38 -2.31 -26.89 16 24 O -0.98 -25.86 17.92 -127.38 -2.28 -28.14 16 25 C -0.60 -11.80 6.35 71.99 0.46 -11.35 16 26 C -0.09 -2.20 5.00 30.58 0.15 -2.04 16 27 H 0.09 2.24 7.84 -2.91 -0.02 2.21 16 28 H 0.12 2.14 8.06 -2.91 -0.02 2.12 16 29 H 0.12 2.59 8.06 -2.91 -0.02 2.57 16 30 H 0.07 2.34 7.72 -2.39 -0.02 2.32 16 31 H 0.11 2.54 6.60 -2.39 -0.02 2.53 16 32 H 0.02 1.02 8.07 -2.39 -0.02 1.00 16 33 H 0.00 -0.29 7.42 -2.39 -0.02 -0.31 16 34 H 0.27 15.23 8.31 -92.71 -0.77 14.46 16 35 H 0.15 1.36 8.14 -2.39 -0.02 1.34 16 36 H 0.08 2.05 7.83 -2.39 -0.02 2.03 16 37 H 0.09 1.00 8.11 -2.39 -0.02 0.98 16 38 H 0.13 0.45 8.09 -2.39 -0.02 0.43 16 39 H 0.17 0.49 8.14 -2.39 -0.02 0.47 16 40 H 0.17 0.41 8.14 -2.39 -0.02 0.39 16 41 H 0.15 2.30 8.14 -2.39 -0.02 2.28 16 42 H 0.13 2.66 8.14 -2.39 -0.02 2.64 16 43 H 0.06 1.97 6.92 -2.39 -0.02 1.95 16 44 H 0.08 2.21 8.10 -2.39 -0.02 2.19 16 Total: -1.00 -87.77 375.41 1.08 -86.69 By element: Atomic # 1 Polarization: 10.94 SS G_CDS: 0.98 Total: 11.92 kcal Atomic # 6 Polarization: -27.68 SS G_CDS: 4.76 Total: -22.93 kcal Atomic # 7 Polarization: -80.44 SS G_CDS: -1.74 Total: -82.18 kcal Atomic # 8 Polarization: -80.36 SS G_CDS: -4.64 Total: -84.99 kcal Atomic # 14 Polarization: 45.20 SS G_CDS: 2.03 Total: 47.23 kcal Atomic # 16 Polarization: 44.56 SS G_CDS: -0.30 Total: 44.26 kcal Total: -87.77 1.08 -86.69 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001347716107.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.551 kcal (2) G-P(sol) polarization free energy of solvation -87.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.691 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds