Wall clock time and date at job start Tue Mar 31 2020 14:34:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42893 * 109.47316 * 2 1 4 4 C 1.50702 * 109.46911 * 120.00668 * 2 1 3 5 5 O 1.21292 * 120.00666 * 97.32844 * 4 2 1 6 6 N 1.34780 * 119.99879 * 277.32783 * 4 2 1 7 7 C 1.39987 * 120.00091 * 174.88971 * 6 4 2 8 8 C 1.38918 * 120.00276 * 325.64426 * 7 6 4 9 9 C 1.38000 * 120.00061 * 180.27559 * 8 7 6 10 10 C 1.38909 * 120.00152 * 0.02562 * 9 8 7 11 11 O 1.35776 * 119.99796 * 179.97438 * 10 9 8 12 12 C 1.34814 * 116.99862 * 186.26074 * 11 10 9 13 13 H 1.07998 * 120.00164 * 5.60136 * 12 11 10 14 14 C 1.38636 * 119.99807 * 185.61309 * 12 11 10 15 15 N 1.31567 * 119.99984 * 359.97438 * 14 12 11 16 16 Si 1.86802 * 119.99832 * 179.97438 * 14 12 11 17 17 H 1.48504 * 109.47252 * 0.02562 * 16 14 12 18 18 H 1.48497 * 109.46965 * 119.99505 * 16 14 12 19 19 H 1.48497 * 109.47304 * 239.99947 * 16 14 12 20 20 C 1.38910 * 120.00251 * 359.97438 * 10 9 8 21 21 C 1.38001 * 120.00050 * 359.97438 * 20 10 9 22 22 C 1.50704 * 109.46905 * 239.99921 * 2 1 3 23 23 C 1.38237 * 119.99631 * 125.23141 * 22 2 1 24 24 C 1.38236 * 119.99726 * 179.77112 * 23 22 2 25 25 C 1.38235 * 120.00241 * 0.49888 * 24 23 22 26 26 C 1.38240 * 119.99614 * 359.75439 * 25 24 23 27 27 C 1.38232 * 120.00434 * 359.97438 * 26 25 24 28 28 H 1.09005 * 109.46875 * 299.99680 * 1 2 3 29 29 H 1.09004 * 109.47449 * 59.99328 * 1 2 3 30 30 H 1.09003 * 109.47814 * 179.97438 * 1 2 3 31 31 H 0.96699 * 113.99761 * 179.97438 * 3 2 1 32 32 H 0.97000 * 119.99823 * 354.88493 * 6 4 2 33 33 H 1.07999 * 120.00013 * 0.25670 * 8 7 6 34 34 H 1.08003 * 119.99832 * 179.97438 * 9 8 7 35 35 H 0.97000 * 119.99637 * 180.02562 * 15 14 12 36 36 H 1.07997 * 120.00033 * 179.97438 * 20 10 9 37 37 H 1.08005 * 119.99924 * 179.97438 * 21 20 10 38 38 H 1.07992 * 120.00063 * 359.97438 * 23 22 2 39 39 H 1.08001 * 119.99972 * 180.23025 * 24 23 22 40 40 H 1.07997 * 120.00692 * 179.72769 * 25 24 23 41 41 H 1.08001 * 119.99879 * 179.97438 * 26 25 24 42 42 H 1.08000 * 120.00362 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 2.0322 -0.7106 1.2304 5 8 2.3607 -1.8764 1.1660 6 7 2.1165 -0.0506 2.4025 7 6 2.4804 -0.7364 3.5674 8 6 2.0849 -2.0556 3.7490 9 6 2.4389 -2.7299 4.8999 10 6 3.1901 -2.0892 5.8770 11 8 3.5379 -2.7525 7.0096 12 6 4.1536 -2.0378 7.9728 13 1 4.2682 -0.9696 7.8628 14 6 4.6398 -2.6743 9.1043 15 7 4.5000 -3.9756 9.2384 16 14 5.4936 -1.6842 10.4386 17 1 5.5217 -0.2511 10.0503 18 1 4.7538 -1.8356 11.7172 19 1 6.8834 -2.1786 10.6093 20 6 3.5856 -0.7700 5.6955 21 6 3.2326 -0.0961 4.5442 22 6 2.0322 -0.7105 -1.2305 23 6 2.9137 -0.0743 -2.0844 24 6 3.3782 -0.7276 -3.2106 25 6 2.9531 -2.0134 -3.4884 26 6 2.0676 -2.6476 -2.6372 27 6 1.6074 -1.9963 -1.5081 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3635 -1.0276 -0.0005 31 1 2.9703 1.4235 0.0004 32 1 1.9250 0.8996 2.4389 33 1 1.5002 -2.5535 2.9897 34 1 2.1310 -3.7554 5.0413 35 1 4.8399 -4.4209 10.0303 36 1 4.1693 -0.2719 6.4554 37 1 3.5398 0.9298 4.4032 38 1 3.2421 0.9319 -1.8700 39 1 4.0698 -0.2320 -3.8758 40 1 3.3125 -2.5223 -4.3706 41 1 1.7351 -3.6519 -2.8544 42 1 0.9153 -2.4917 -0.8433 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001362018108.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:34:12 Heat of formation + Delta-G solvation = -50.939613 kcal Electronic energy + Delta-G solvation = -26653.331448 eV Core-core repulsion = 22757.455064 eV Total energy + Delta-G solvation = -3895.876384 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.130 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.97334 -39.39152 -38.54807 -37.14886 -36.43592 -33.95660 -32.63236 -32.20068 -31.01498 -30.26063 -29.69021 -27.97126 -25.47500 -24.69878 -22.77596 -22.60658 -22.16614 -20.96850 -20.04851 -18.68277 -17.96285 -17.77817 -17.14798 -16.33624 -15.86003 -15.51476 -15.24681 -14.81102 -14.59429 -14.52693 -14.26220 -13.80074 -13.68055 -13.55596 -13.25978 -13.04115 -12.86269 -12.72985 -12.57024 -12.48129 -12.27931 -11.86573 -11.76551 -11.59754 -11.57516 -11.23224 -11.09270 -10.96224 -10.67393 -10.44332 -9.75286 -9.57397 -9.26634 -9.05539 -8.94804 -8.74061 -8.24424 -6.96347 -6.46801 -4.04760 1.09232 1.24802 1.98249 2.16131 2.73024 3.09049 3.12025 3.13020 3.18080 3.64342 3.72179 3.95035 4.24569 4.51755 4.57155 4.66341 4.79618 4.87369 4.97320 5.08402 5.26455 5.28169 5.29308 5.40387 5.48487 5.52871 5.71987 5.74008 5.76973 5.84627 6.10713 6.18472 6.22050 6.25412 6.32729 6.34143 6.75164 6.78216 6.81014 6.89634 7.05427 7.11161 7.19482 7.37801 7.65676 7.74107 7.97589 8.26680 8.98610 9.68787 10.71214 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.024926 B = 0.002375 C = 0.002311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1123.048094 B =11788.822034 C =12112.514849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.165 3.835 3 O -0.545 6.545 4 C 0.481 3.519 5 O -0.511 6.511 6 N -0.650 5.650 7 C 0.034 3.966 8 C -0.066 4.066 9 C -0.178 4.178 10 C 0.148 3.852 11 O -0.176 6.176 12 C -0.391 4.391 13 H 0.092 0.908 14 C 0.039 3.961 15 N -0.861 5.861 16 Si 0.941 3.059 17 H -0.267 1.267 18 H -0.276 1.276 19 H -0.276 1.276 20 C -0.219 4.219 21 C -0.088 4.088 22 C -0.107 4.107 23 C -0.108 4.108 24 C -0.125 4.125 25 C -0.116 4.116 26 C -0.123 4.123 27 C -0.076 4.076 28 H 0.073 0.927 29 H 0.078 0.922 30 H 0.080 0.920 31 H 0.383 0.617 32 H 0.406 0.594 33 H 0.122 0.878 34 H 0.121 0.879 35 H 0.270 0.730 36 H 0.132 0.868 37 H 0.111 0.889 38 H 0.125 0.875 39 H 0.122 0.878 40 H 0.121 0.879 41 H 0.123 0.877 42 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.639 9.845 -21.635 24.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.121 3.879 3 O -0.351 6.351 4 C 0.266 3.734 5 O -0.386 6.386 6 N -0.295 5.295 7 C -0.059 4.059 8 C -0.086 4.086 9 C -0.198 4.198 10 C 0.093 3.907 11 O -0.079 6.079 12 C -0.467 4.467 13 H 0.110 0.890 14 C -0.166 4.166 15 N -0.496 5.496 16 Si 0.766 3.234 17 H -0.191 1.191 18 H -0.201 1.201 19 H -0.201 1.201 20 C -0.238 4.238 21 C -0.109 4.109 22 C -0.107 4.107 23 C -0.126 4.126 24 C -0.143 4.143 25 C -0.134 4.134 26 C -0.141 4.141 27 C -0.094 4.094 28 H 0.092 0.908 29 H 0.097 0.903 30 H 0.098 0.902 31 H 0.232 0.768 32 H 0.242 0.758 33 H 0.140 0.860 34 H 0.139 0.861 35 H 0.080 0.920 36 H 0.149 0.851 37 H 0.129 0.871 38 H 0.143 0.857 39 H 0.140 0.860 40 H 0.139 0.861 41 H 0.141 0.859 42 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -6.029 8.721 -21.446 23.924 hybrid contribution 1.123 0.864 0.694 1.578 sum -4.906 9.586 -20.752 23.380 Atomic orbital electron populations 1.21784 0.89605 1.03645 1.04144 1.20173 0.96546 0.81494 0.89679 1.86569 1.27552 1.24319 1.96707 1.21171 0.79152 0.88186 0.84883 1.90755 1.46507 1.16432 1.84861 1.43210 1.67366 1.12721 1.06207 1.17255 1.06253 0.94054 0.88297 1.20559 0.98775 0.93096 0.96180 1.20118 1.04746 1.00762 0.94141 1.19421 0.92800 0.90874 0.87557 1.84006 1.66366 1.36630 1.20910 1.21359 1.36864 0.92131 0.96375 0.89035 1.25302 0.97108 0.96077 0.98096 1.70055 1.43036 1.08151 1.28333 0.85644 0.78836 0.79143 0.79778 1.19100 1.20130 1.20137 1.20988 1.07577 0.95743 0.99532 1.20485 0.97316 0.99053 0.94006 1.19950 0.99165 0.95551 0.96070 1.20894 0.96973 0.99906 0.94869 1.21065 1.00373 0.95268 0.97559 1.21193 0.97528 0.95194 0.99514 1.21158 0.98067 0.99983 0.94872 1.20955 0.98986 0.93412 0.96048 0.90766 0.90346 0.90157 0.76804 0.75810 0.85964 0.86102 0.92026 0.85061 0.87113 0.85745 0.86007 0.86123 0.85880 0.85683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.21 8.58 37.15 0.32 -0.89 16 2 C 0.17 1.73 1.15 -92.92 -0.11 1.62 16 3 O -0.54 -4.74 11.47 -35.23 -0.40 -5.14 16 4 C 0.48 6.65 6.41 -10.98 -0.07 6.58 16 5 O -0.51 -8.93 12.78 5.55 0.07 -8.86 16 6 N -0.65 -8.86 5.28 -9.82 -0.05 -8.91 16 7 C 0.03 0.59 6.26 -83.63 -0.52 0.07 16 8 C -0.07 -1.29 8.65 -39.42 -0.34 -1.63 16 9 C -0.18 -3.90 9.98 -39.42 -0.39 -4.29 16 10 C 0.15 3.58 6.65 -39.08 -0.26 3.32 16 11 O -0.18 -5.02 9.75 0.01 0.00 -5.02 16 12 C -0.39 -10.84 9.43 30.88 0.29 -10.55 16 13 H 0.09 2.33 5.30 -52.49 -0.28 2.06 16 14 C 0.04 1.06 5.49 -17.52 -0.10 0.96 16 15 N -0.86 -25.23 13.67 55.48 0.76 -24.47 16 16 Si 0.94 20.36 29.55 -169.99 -5.02 15.34 16 17 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 18 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 19 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 20 C -0.22 -4.67 9.12 -39.42 -0.36 -5.03 16 21 C -0.09 -1.58 9.96 -39.41 -0.39 -1.98 16 22 C -0.11 -1.17 4.56 -104.62 -0.48 -1.65 16 23 C -0.11 -1.05 9.23 -39.58 -0.37 -1.41 16 24 C -0.12 -1.13 10.05 -39.58 -0.40 -1.53 16 25 C -0.12 -1.07 10.05 -39.58 -0.40 -1.46 16 26 C -0.12 -1.24 10.05 -39.58 -0.40 -1.64 16 27 C -0.08 -0.86 7.95 -39.58 -0.31 -1.18 16 28 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 30 H 0.08 0.70 7.10 -51.93 -0.37 0.33 16 31 H 0.38 2.43 7.84 45.56 0.36 2.79 16 32 H 0.41 4.37 8.25 -40.82 -0.34 4.03 16 33 H 0.12 2.29 6.47 -52.49 -0.34 1.95 16 34 H 0.12 2.57 8.06 -52.48 -0.42 2.14 16 35 H 0.27 7.22 8.31 -40.82 -0.34 6.88 16 36 H 0.13 2.78 5.72 -52.49 -0.30 2.48 16 37 H 0.11 1.61 8.06 -52.48 -0.42 1.19 16 38 H 0.12 0.93 6.48 -52.49 -0.34 0.59 16 39 H 0.12 0.82 8.06 -52.49 -0.42 0.40 16 40 H 0.12 0.83 8.06 -52.49 -0.42 0.41 16 41 H 0.12 1.00 8.06 -52.49 -0.42 0.58 16 42 H 0.13 1.41 7.01 -52.49 -0.37 1.04 16 LS Contribution 356.46 15.07 5.37 5.37 Total: -1.00 -33.47 356.46 -7.63 -41.10 By element: Atomic # 1 Polarization: 15.36 SS G_CDS: -4.07 Total: 11.29 kcal Atomic # 6 Polarization: -16.40 SS G_CDS: -4.28 Total: -20.69 kcal Atomic # 7 Polarization: -34.09 SS G_CDS: 0.71 Total: -33.39 kcal Atomic # 8 Polarization: -18.69 SS G_CDS: -0.33 Total: -19.02 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -5.02 Total: 15.34 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -33.47 -7.63 -41.10 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362018108.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.841 kcal (2) G-P(sol) polarization free energy of solvation -33.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.098 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds