Wall clock time and date at job start Tue Mar 31 2020 14:34:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42893 * 109.47316 * 2 1 4 4 C 1.50702 * 109.46911 * 120.00668 * 2 1 3 5 5 O 1.21292 * 120.00666 * 97.32844 * 4 2 1 6 6 N 1.34780 * 119.99879 * 277.32783 * 4 2 1 7 7 C 1.39987 * 120.00091 * 174.88971 * 6 4 2 8 8 C 1.38918 * 120.00276 * 325.64426 * 7 6 4 9 9 C 1.38000 * 120.00061 * 180.27559 * 8 7 6 10 10 C 1.38909 * 120.00152 * 0.02562 * 9 8 7 11 11 O 1.35776 * 119.99796 * 179.97438 * 10 9 8 12 12 C 1.34814 * 116.99862 * 186.26074 * 11 10 9 13 13 H 1.07998 * 120.00164 * 5.60136 * 12 11 10 14 14 C 1.38636 * 119.99807 * 185.61309 * 12 11 10 15 15 N 1.31567 * 119.99984 * 359.97438 * 14 12 11 16 16 Si 1.86802 * 119.99832 * 179.97438 * 14 12 11 17 17 H 1.48504 * 109.47252 * 0.02562 * 16 14 12 18 18 H 1.48497 * 109.46965 * 119.99505 * 16 14 12 19 19 H 1.48497 * 109.47304 * 239.99947 * 16 14 12 20 20 C 1.38910 * 120.00251 * 359.97438 * 10 9 8 21 21 C 1.38001 * 120.00050 * 359.97438 * 20 10 9 22 22 C 1.50704 * 109.46905 * 239.99921 * 2 1 3 23 23 C 1.38237 * 119.99631 * 125.23141 * 22 2 1 24 24 C 1.38236 * 119.99726 * 179.77112 * 23 22 2 25 25 C 1.38235 * 120.00241 * 0.49888 * 24 23 22 26 26 C 1.38240 * 119.99614 * 359.75439 * 25 24 23 27 27 C 1.38232 * 120.00434 * 359.97438 * 26 25 24 28 28 H 1.09005 * 109.46875 * 299.99680 * 1 2 3 29 29 H 1.09004 * 109.47449 * 59.99328 * 1 2 3 30 30 H 1.09003 * 109.47814 * 179.97438 * 1 2 3 31 31 H 0.96699 * 113.99761 * 179.97438 * 3 2 1 32 32 H 0.97000 * 119.99823 * 354.88493 * 6 4 2 33 33 H 1.07999 * 120.00013 * 0.25670 * 8 7 6 34 34 H 1.08003 * 119.99832 * 179.97438 * 9 8 7 35 35 H 0.97000 * 119.99637 * 180.02562 * 15 14 12 36 36 H 1.07997 * 120.00033 * 179.97438 * 20 10 9 37 37 H 1.08005 * 119.99924 * 179.97438 * 21 20 10 38 38 H 1.07992 * 120.00063 * 359.97438 * 23 22 2 39 39 H 1.08001 * 119.99972 * 180.23025 * 24 23 22 40 40 H 1.07997 * 120.00692 * 179.72769 * 25 24 23 41 41 H 1.08001 * 119.99879 * 179.97438 * 26 25 24 42 42 H 1.08000 * 120.00362 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 2.0322 -0.7106 1.2304 5 8 2.3607 -1.8764 1.1660 6 7 2.1165 -0.0506 2.4025 7 6 2.4804 -0.7364 3.5674 8 6 2.0849 -2.0556 3.7490 9 6 2.4389 -2.7299 4.8999 10 6 3.1901 -2.0892 5.8770 11 8 3.5379 -2.7525 7.0096 12 6 4.1536 -2.0378 7.9728 13 1 4.2682 -0.9696 7.8628 14 6 4.6398 -2.6743 9.1043 15 7 4.5000 -3.9756 9.2384 16 14 5.4936 -1.6842 10.4386 17 1 5.5217 -0.2511 10.0503 18 1 4.7538 -1.8356 11.7172 19 1 6.8834 -2.1786 10.6093 20 6 3.5856 -0.7700 5.6955 21 6 3.2326 -0.0961 4.5442 22 6 2.0322 -0.7105 -1.2305 23 6 2.9137 -0.0743 -2.0844 24 6 3.3782 -0.7276 -3.2106 25 6 2.9531 -2.0134 -3.4884 26 6 2.0676 -2.6476 -2.6372 27 6 1.6074 -1.9963 -1.5081 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3635 -1.0276 -0.0005 31 1 2.9703 1.4235 0.0004 32 1 1.9250 0.8996 2.4389 33 1 1.5002 -2.5535 2.9897 34 1 2.1310 -3.7554 5.0413 35 1 4.8399 -4.4209 10.0303 36 1 4.1693 -0.2719 6.4554 37 1 3.5398 0.9298 4.4032 38 1 3.2421 0.9319 -1.8700 39 1 4.0698 -0.2320 -3.8758 40 1 3.3125 -2.5223 -4.3706 41 1 1.7351 -3.6519 -2.8544 42 1 0.9153 -2.4917 -0.8433 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001362018108.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:34:11 Heat of formation + Delta-G solvation = -73.860606 kcal Electronic energy + Delta-G solvation = -26654.325377 eV Core-core repulsion = 22757.455064 eV Total energy + Delta-G solvation = -3896.870313 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.130 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.03717 -40.78835 -39.82882 -38.28614 -37.73883 -35.39345 -34.15346 -33.39041 -31.90968 -31.72763 -30.52191 -29.46965 -27.37505 -25.67428 -24.05494 -23.64184 -23.36065 -22.29622 -21.12977 -19.96882 -19.40371 -19.05177 -18.60540 -17.69680 -16.72077 -16.57211 -16.36353 -16.29853 -15.96668 -15.77046 -15.49512 -15.24054 -15.13857 -14.57270 -14.46493 -14.32664 -14.10401 -13.81420 -13.57728 -13.43471 -13.36950 -13.28542 -13.18804 -13.04072 -12.75670 -12.49909 -12.38754 -12.08141 -11.93040 -11.74238 -11.41935 -11.07654 -10.68826 -10.52942 -9.88129 -9.79711 -9.71159 -8.64095 -8.46601 -6.13888 0.34062 0.46062 0.50142 0.51437 1.36777 1.41048 1.51877 1.55373 1.98965 2.18481 2.80330 2.87442 2.99156 3.14997 3.45547 3.49022 3.58152 3.88371 4.03453 4.09800 4.12360 4.19984 4.28326 4.46742 4.57889 4.58661 4.60907 4.70916 4.71798 4.80974 5.02072 5.05882 5.09629 5.13887 5.14433 5.27635 5.41935 5.51717 5.54496 5.59019 5.61869 5.65679 6.01486 6.08435 6.10820 6.30889 6.56744 6.97770 7.11624 7.78217 8.77035 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.024926 B = 0.002375 C = 0.002311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1123.048094 B =11788.822034 C =12112.514849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.182 3.818 3 O -0.538 6.538 4 C 0.483 3.517 5 O -0.547 6.547 6 N -0.640 5.640 7 C 0.061 3.939 8 C -0.071 4.071 9 C -0.189 4.189 10 C 0.109 3.891 11 O -0.231 6.231 12 C -0.411 4.411 13 H 0.106 0.894 14 C -0.025 4.025 15 N -0.922 5.922 16 Si 1.021 2.979 17 H -0.247 1.247 18 H -0.270 1.270 19 H -0.271 1.271 20 C -0.219 4.219 21 C -0.079 4.079 22 C -0.124 4.124 23 C -0.114 4.114 24 C -0.130 4.130 25 C -0.121 4.121 26 C -0.137 4.137 27 C -0.097 4.097 28 H 0.080 0.920 29 H 0.091 0.909 30 H 0.076 0.924 31 H 0.395 0.605 32 H 0.426 0.574 33 H 0.129 0.871 34 H 0.113 0.887 35 H 0.272 0.728 36 H 0.132 0.868 37 H 0.158 0.842 38 H 0.147 0.853 39 H 0.147 0.853 40 H 0.143 0.857 41 H 0.134 0.866 42 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.252 13.491 -23.897 27.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.137 3.863 3 O -0.346 6.346 4 C 0.270 3.730 5 O -0.424 6.424 6 N -0.287 5.287 7 C -0.032 4.032 8 C -0.091 4.091 9 C -0.209 4.209 10 C 0.058 3.942 11 O -0.138 6.138 12 C -0.487 4.487 13 H 0.124 0.876 14 C -0.223 4.223 15 N -0.561 5.561 16 Si 0.840 3.160 17 H -0.170 1.170 18 H -0.195 1.195 19 H -0.196 1.196 20 C -0.239 4.239 21 C -0.099 4.099 22 C -0.125 4.125 23 C -0.132 4.132 24 C -0.148 4.148 25 C -0.139 4.139 26 C -0.155 4.155 27 C -0.115 4.115 28 H 0.099 0.901 29 H 0.109 0.891 30 H 0.095 0.905 31 H 0.246 0.754 32 H 0.265 0.735 33 H 0.147 0.853 34 H 0.131 0.869 35 H 0.081 0.919 36 H 0.150 0.850 37 H 0.176 0.824 38 H 0.165 0.835 39 H 0.165 0.835 40 H 0.161 0.839 41 H 0.152 0.848 42 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -5.667 12.437 -23.780 27.428 hybrid contribution 0.883 -0.188 0.983 1.335 sum -4.784 12.249 -22.797 26.318 Atomic orbital electron populations 1.21836 0.88549 1.03837 1.05127 1.19947 0.97137 0.81732 0.87446 1.86577 1.28845 1.22751 1.96447 1.21932 0.77688 0.87771 0.85629 1.90754 1.47765 1.18355 1.85517 1.43165 1.67064 1.13550 1.04910 1.17388 1.03437 0.93240 0.89130 1.20681 0.98918 0.94214 0.95307 1.20243 1.04953 1.00860 0.94822 1.19871 0.94378 0.92470 0.87482 1.83970 1.68841 1.38294 1.22648 1.21895 1.36870 0.93000 0.96929 0.87637 1.26638 0.97735 0.97285 1.00609 1.70208 1.45709 1.10462 1.29679 0.84500 0.77339 0.78196 0.75991 1.17015 1.19483 1.19569 1.21138 1.07283 0.94660 1.00810 1.20845 0.95937 1.00847 0.92240 1.20090 1.00069 0.95647 0.96689 1.21218 0.96336 1.00923 0.94746 1.21451 1.00352 0.95258 0.97694 1.21536 0.96899 0.95538 0.99948 1.21407 0.98513 1.00722 0.94892 1.21048 0.99678 0.94121 0.96685 0.90056 0.89064 0.90488 0.75381 0.73488 0.85278 0.86936 0.91874 0.85018 0.82437 0.83533 0.83523 0.83942 0.84824 0.86709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.12 8.58 71.98 0.62 -1.50 16 2 C 0.18 3.31 1.15 -12.29 -0.01 3.30 16 3 O -0.54 -7.20 11.47 -148.98 -1.71 -8.90 16 4 C 0.48 12.22 6.41 87.66 0.56 12.78 16 5 O -0.55 -18.55 12.78 -3.07 -0.04 -18.59 16 6 N -0.64 -15.30 5.28 -303.37 -1.60 -16.90 16 7 C 0.06 2.02 6.26 38.17 0.24 2.26 16 8 C -0.07 -2.75 8.65 22.38 0.19 -2.56 16 9 C -0.19 -8.61 9.98 22.37 0.22 -8.38 16 10 C 0.11 5.48 6.65 22.59 0.15 5.63 16 11 O -0.23 -13.98 9.75 -22.87 -0.22 -14.21 16 12 C -0.41 -23.69 9.43 67.91 0.64 -23.05 16 13 H 0.11 5.48 5.30 -2.91 -0.02 5.46 16 14 C -0.03 -1.44 5.49 84.83 0.47 -0.97 16 15 N -0.92 -56.95 13.67 21.61 0.30 -56.65 16 16 Si 1.02 42.42 29.55 68.60 2.03 44.44 16 17 H -0.25 -9.31 7.11 99.48 0.71 -8.60 16 18 H -0.27 -10.80 7.11 99.48 0.71 -10.09 16 19 H -0.27 -10.87 7.11 99.48 0.71 -10.16 16 20 C -0.22 -9.26 9.12 22.37 0.20 -9.06 16 21 C -0.08 -2.59 9.96 22.38 0.22 -2.37 16 22 C -0.12 -2.48 4.56 -19.86 -0.09 -2.57 16 23 C -0.11 -1.88 9.23 22.27 0.21 -1.67 16 24 C -0.13 -1.97 10.05 22.27 0.22 -1.75 16 25 C -0.12 -1.97 10.05 22.27 0.22 -1.74 16 26 C -0.14 -2.63 10.05 22.27 0.22 -2.41 16 27 C -0.10 -2.13 7.95 22.27 0.18 -1.96 16 28 H 0.08 1.14 8.14 -2.38 -0.02 1.12 16 29 H 0.09 1.21 8.14 -2.38 -0.02 1.19 16 30 H 0.08 1.25 7.10 -2.39 -0.02 1.23 16 31 H 0.40 3.28 7.84 -74.06 -0.58 2.70 16 32 H 0.43 7.20 8.25 -92.71 -0.77 6.44 16 33 H 0.13 4.82 6.47 -2.91 -0.02 4.80 16 34 H 0.11 5.15 8.06 -2.91 -0.02 5.12 16 35 H 0.27 15.36 8.31 -92.71 -0.77 14.59 16 36 H 0.13 5.50 5.72 -2.91 -0.02 5.49 16 37 H 0.16 3.75 8.06 -2.91 -0.02 3.72 16 38 H 0.15 1.62 6.48 -2.91 -0.02 1.60 16 39 H 0.15 1.43 8.06 -2.91 -0.02 1.40 16 40 H 0.14 1.58 8.06 -2.91 -0.02 1.56 16 41 H 0.13 2.10 8.06 -2.91 -0.02 2.08 16 42 H 0.11 2.63 7.01 -2.91 -0.02 2.61 16 Total: -1.00 -77.54 356.46 2.96 -74.58 By element: Atomic # 1 Polarization: 32.52 SS G_CDS: -0.26 Total: 32.26 kcal Atomic # 6 Polarization: -40.50 SS G_CDS: 4.47 Total: -36.03 kcal Atomic # 7 Polarization: -72.25 SS G_CDS: -1.31 Total: -73.55 kcal Atomic # 8 Polarization: -39.73 SS G_CDS: -1.97 Total: -41.70 kcal Atomic # 14 Polarization: 42.42 SS G_CDS: 2.03 Total: 44.44 kcal Total: -77.54 2.96 -74.58 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362018108.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.723 kcal (2) G-P(sol) polarization free energy of solvation -77.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.584 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds