Wall clock time and date at job start Tue Mar 31 2020 14:34:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.47198 * 2 1 4 4 O 1.45200 * 109.47130 * 120.00466 * 2 1 3 5 5 C 1.34708 * 116.99682 * 89.99803 * 4 2 1 6 6 O 1.21464 * 120.00389 * 359.97438 * 5 4 2 7 7 C 1.47748 * 119.99415 * 179.97438 * 5 4 2 8 8 C 1.39721 * 120.09064 * 359.97438 * 7 5 4 9 9 C 1.38011 * 120.10413 * 180.02562 * 8 7 5 10 10 C 1.38156 * 120.28692 * 359.97438 * 9 8 7 11 11 C 1.39483 * 120.17243 * 0.02562 * 10 9 8 12 12 C 1.48308 * 120.04960 * 179.97438 * 11 10 9 13 13 C 1.39416 * 119.65557 * 4.97881 * 12 11 10 14 14 C 1.38221 * 119.15241 * 179.79073 * 13 12 11 15 15 C 1.39423 * 118.45015 * 0.47548 * 14 13 12 16 16 O 1.35709 * 120.38816 * 179.78179 * 15 14 13 17 17 C 1.34812 * 116.99834 * 5.18169 * 16 15 14 18 18 H 1.08000 * 119.99990 * 354.92006 * 17 16 15 19 19 C 1.38655 * 119.99857 * 174.92905 * 17 16 15 20 20 N 1.31552 * 120.00313 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 119.99811 * 179.72287 * 19 17 16 22 22 H 1.48504 * 109.47283 * 180.26846 * 21 19 17 23 23 H 1.48497 * 109.47377 * 300.27178 * 21 19 17 24 24 H 1.48501 * 109.47182 * 60.27342 * 21 19 17 25 25 C 1.38965 * 119.22405 * 359.50007 * 15 14 13 26 26 N 1.31655 * 120.79219 * 0.27932 * 25 15 14 27 27 C 1.39142 * 119.89674 * 0.23428 * 11 10 9 28 28 H 1.09003 * 109.47521 * 59.99621 * 1 2 3 29 29 H 1.08994 * 109.47439 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.46963 * 299.99753 * 1 2 3 31 31 H 1.09004 * 109.46318 * 239.99941 * 2 1 3 32 32 H 1.08997 * 109.46962 * 180.02562 * 3 2 1 33 33 H 1.09003 * 109.47194 * 300.00580 * 3 2 1 34 34 H 1.08999 * 109.46962 * 60.00246 * 3 2 1 35 35 H 1.07993 * 119.94657 * 359.97438 * 8 7 5 36 36 H 1.08001 * 119.86034 * 179.97438 * 9 8 7 37 37 H 1.07998 * 119.91654 * 179.97438 * 10 9 8 38 38 H 1.08004 * 120.42394 * 0.04291 * 13 12 11 39 39 H 1.07993 * 120.77788 * 180.22929 * 14 13 12 40 40 H 0.97000 * 119.99792 * 359.72572 * 20 19 17 41 41 H 1.08006 * 119.60135 * 180.25199 * 25 15 14 42 42 H 1.07995 * 120.14440 * 179.72374 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 2.0140 -0.6846 1.1855 5 6 2.2178 -2.0123 1.0845 6 8 1.9968 -2.5827 0.0352 7 6 2.7102 -2.7748 2.2504 8 6 2.9655 -2.1204 3.4582 9 6 3.4259 -2.8323 4.5473 10 6 3.6366 -4.1943 4.4509 11 6 3.3856 -4.8593 3.2508 12 6 3.6133 -6.3214 3.1503 13 6 3.9782 -7.0424 4.2863 14 6 4.1835 -8.4053 4.1817 15 6 4.0262 -9.0068 2.9338 16 8 4.2224 -10.3414 2.7854 17 6 4.4640 -11.0527 3.9048 18 1 4.5760 -10.5468 4.8524 19 6 4.5690 -12.4337 3.8395 20 7 4.4323 -13.0500 2.6854 21 14 4.9115 -13.4186 5.3894 22 1 4.9829 -14.8631 5.0523 23 1 6.2037 -12.9830 5.9773 24 1 3.8201 -13.1928 6.3707 25 6 3.6603 -8.2247 1.8449 26 7 3.4679 -6.9293 1.9799 27 6 2.9264 -4.1481 2.1466 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8932 -0.5139 -0.8901 32 1 3.1300 1.4425 -0.0005 33 1 1.6766 1.9564 -0.8899 34 1 1.6767 1.9563 0.8900 35 1 2.8031 -1.0559 3.5395 36 1 3.6224 -2.3225 5.4789 37 1 3.9974 -4.7454 5.3068 38 1 4.0950 -6.5431 5.2369 39 1 4.4632 -8.9899 5.0455 40 1 4.2541 -12.5386 1.8806 41 1 3.5327 -8.6851 0.8762 42 1 2.7350 -4.6582 1.2142 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240947607.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:34:21 Heat of formation + Delta-G solvation = -66.796418 kcal Electronic energy + Delta-G solvation = -25755.544402 eV Core-core repulsion = 21858.980416 eV Total energy + Delta-G solvation = -3896.563987 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.130 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.74190 -39.93187 -38.77209 -37.32792 -36.80242 -33.53139 -32.76606 -32.11555 -31.55859 -30.99277 -28.39174 -27.64063 -25.43941 -24.90998 -23.29025 -22.94423 -21.58383 -21.36070 -20.46556 -18.74887 -18.17885 -17.32842 -16.90820 -16.18573 -16.08968 -15.99673 -15.43006 -14.67898 -14.48912 -14.33996 -14.18105 -14.06466 -13.85202 -13.77021 -13.50242 -13.48884 -13.07591 -12.68925 -12.66413 -12.54127 -12.18624 -11.99884 -11.96788 -11.67910 -11.27187 -11.08106 -11.05081 -10.79742 -10.77240 -10.52810 -10.42951 -10.01670 -9.40782 -9.19758 -9.07479 -8.92813 -8.79984 -7.38501 -7.03656 -4.29852 0.60953 1.08493 1.87601 2.09429 2.45745 2.60282 3.11674 3.16145 3.32814 3.77012 3.91023 4.44280 4.48192 4.50462 4.53046 4.57964 4.77751 4.81146 4.84342 4.95681 5.04139 5.14679 5.16787 5.26795 5.34827 5.38922 5.41747 5.43160 5.63177 5.66878 5.68282 5.75054 5.81295 5.91561 5.98393 6.23344 6.27057 6.31466 6.37966 6.50520 6.74295 6.82756 6.86403 7.20334 7.27977 7.67581 8.10669 8.54933 8.63434 9.26306 10.39636 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.029833 B = 0.002089 C = 0.001977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 938.318600 B =13402.319101 C =14158.991558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.079 3.921 3 C -0.149 4.149 4 O -0.350 6.350 5 C 0.511 3.489 6 O -0.503 6.503 7 C -0.130 4.130 8 C -0.077 4.077 9 C -0.130 4.130 10 C -0.086 4.086 11 C -0.012 4.012 12 C 0.035 3.965 13 C -0.097 4.097 14 C -0.199 4.199 15 C 0.110 3.890 16 O -0.181 6.181 17 C -0.471 4.471 18 H 0.088 0.912 19 C 0.014 3.986 20 N -0.864 5.864 21 Si 1.096 2.904 22 H -0.271 1.271 23 H -0.279 1.279 24 H -0.279 1.279 25 C 0.035 3.965 26 N -0.429 5.429 27 C -0.035 4.035 28 H 0.074 0.926 29 H 0.063 0.937 30 H 0.066 0.934 31 H 0.086 0.914 32 H 0.065 0.935 33 H 0.077 0.923 34 H 0.067 0.933 35 H 0.133 0.867 36 H 0.130 0.870 37 H 0.131 0.869 38 H 0.124 0.876 39 H 0.140 0.860 40 H 0.286 0.714 41 H 0.153 0.847 42 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.593 23.972 2.214 24.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.025 3.975 3 C -0.206 4.206 4 O -0.268 6.268 5 C 0.356 3.644 6 O -0.392 6.392 7 C -0.131 4.131 8 C -0.096 4.096 9 C -0.148 4.148 10 C -0.105 4.105 11 C -0.013 4.013 12 C -0.099 4.099 13 C -0.117 4.117 14 C -0.224 4.224 15 C 0.053 3.947 16 O -0.081 6.081 17 C -0.546 4.546 18 H 0.105 0.895 19 C -0.194 4.194 20 N -0.494 5.494 21 Si 0.919 3.081 22 H -0.195 1.195 23 H -0.205 1.205 24 H -0.205 1.205 25 C -0.129 4.129 26 N -0.138 5.138 27 C -0.054 4.054 28 H 0.093 0.907 29 H 0.082 0.918 30 H 0.085 0.915 31 H 0.104 0.896 32 H 0.084 0.916 33 H 0.096 0.904 34 H 0.086 0.914 35 H 0.151 0.849 36 H 0.148 0.852 37 H 0.149 0.851 38 H 0.142 0.858 39 H 0.158 0.842 40 H 0.096 0.904 41 H 0.170 0.830 42 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -3.667 22.535 1.519 22.882 hybrid contribution -0.016 1.097 0.162 1.109 sum -3.683 23.632 1.681 23.976 Atomic orbital electron populations 1.22216 0.94290 1.03263 1.03001 1.22740 0.94643 0.92998 0.87132 1.21886 1.02161 0.93420 1.03123 1.86598 1.77372 1.21830 1.41006 1.21254 0.74293 0.80838 0.88040 1.90835 1.48190 1.70004 1.30122 1.19020 1.07923 0.93537 0.92598 1.21369 0.96408 1.00183 0.91613 1.20982 1.01122 0.93929 0.98791 1.21489 0.97477 0.94439 0.97134 1.18415 0.98477 0.91344 0.93055 1.18961 1.09028 0.91928 0.89956 1.21679 0.97811 0.93881 0.98316 1.21468 1.07705 0.94737 0.98527 1.20401 0.94285 0.85669 0.94368 1.83643 1.74855 1.14095 1.35556 1.22341 1.54307 0.91575 0.86406 0.89461 1.26707 0.95054 0.92496 1.05099 1.70577 1.38974 1.39884 0.99932 0.83097 0.77091 0.76334 0.71547 1.19504 1.20460 1.20465 1.21734 1.05028 0.88259 0.97915 1.67318 1.11456 1.09883 1.25163 1.21413 0.93193 0.91190 0.99572 0.90711 0.91818 0.91519 0.89622 0.91630 0.90375 0.91369 0.84865 0.85166 0.85109 0.85848 0.84224 0.90394 0.82988 0.83492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.38 9.55 37.16 0.35 -1.03 16 2 C 0.08 0.74 3.19 -26.73 -0.09 0.66 16 3 C -0.15 -0.95 9.57 37.16 0.36 -0.59 16 4 O -0.35 -4.07 9.12 -40.51 -0.37 -4.44 16 5 C 0.51 7.21 7.87 34.62 0.27 7.48 16 6 O -0.50 -8.40 15.60 -19.24 -0.30 -8.70 16 7 C -0.13 -1.80 5.87 -105.02 -0.62 -2.41 16 8 C -0.08 -0.86 9.61 -39.11 -0.38 -1.24 16 9 C -0.13 -1.35 10.02 -39.69 -0.40 -1.75 16 10 C -0.09 -1.07 9.41 -39.15 -0.37 -1.44 16 11 C -0.01 -0.19 5.87 -104.95 -0.62 -0.81 16 12 C 0.04 0.65 6.72 -82.92 -0.56 0.09 16 13 C -0.10 -1.71 9.44 -39.15 -0.37 -2.08 16 14 C -0.20 -4.08 9.25 -39.15 -0.36 -4.44 16 15 C 0.11 2.54 6.67 -38.87 -0.26 2.28 16 16 O -0.18 -4.77 9.17 0.23 0.00 -4.77 16 17 C -0.47 -12.37 9.50 30.89 0.29 -12.08 16 18 H 0.09 2.12 5.25 -52.49 -0.28 1.85 16 19 C 0.01 0.37 5.49 -17.52 -0.10 0.27 16 20 N -0.86 -24.39 13.70 55.48 0.76 -23.63 16 21 Si 1.10 22.10 29.92 -169.99 -5.09 17.02 16 22 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 23 H -0.28 -5.27 7.11 56.52 0.40 -4.87 16 24 H -0.28 -5.28 7.11 56.52 0.40 -4.88 16 25 C 0.03 0.74 11.14 -17.36 -0.19 0.55 16 26 N -0.43 -8.74 9.42 -9.61 -0.09 -8.83 16 27 C -0.03 -0.55 9.12 -38.81 -0.35 -0.91 16 28 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 31 H 0.09 0.89 7.16 -51.93 -0.37 0.52 16 32 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 35 H 0.13 1.19 7.60 -52.49 -0.40 0.79 16 36 H 0.13 0.95 8.06 -52.49 -0.42 0.52 16 37 H 0.13 1.36 6.19 -52.49 -0.32 1.04 16 38 H 0.12 1.71 6.20 -52.48 -0.33 1.38 16 39 H 0.14 2.79 5.75 -52.49 -0.30 2.48 16 40 H 0.29 8.23 7.97 -40.82 -0.33 7.90 16 41 H 0.15 2.99 8.06 -52.48 -0.42 2.56 16 42 H 0.15 2.60 7.12 -52.49 -0.37 2.22 16 LS Contribution 364.74 15.07 5.50 5.50 Total: -1.00 -30.77 364.74 -7.84 -38.61 By element: Atomic # 1 Polarization: 11.56 SS G_CDS: -4.88 Total: 6.69 kcal Atomic # 6 Polarization: -14.06 SS G_CDS: -3.38 Total: -17.44 kcal Atomic # 7 Polarization: -33.13 SS G_CDS: 0.67 Total: -32.46 kcal Atomic # 8 Polarization: -17.24 SS G_CDS: -0.67 Total: -17.90 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.09 Total: 17.02 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -30.77 -7.84 -38.61 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240947607.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.187 kcal (2) G-P(sol) polarization free energy of solvation -30.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.609 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds