Wall clock time and date at job start Tue Mar 31 2020 14:34:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35992 * 116.99701 * 2 1 4 4 C 1.38960 * 119.90879 * 359.97438 * 3 2 1 5 5 C 1.38035 * 120.34280 * 180.02562 * 4 3 2 6 6 C 1.38667 * 120.14842 * 0.02989 * 5 4 3 7 7 O 1.35738 * 120.09698 * 179.97438 * 6 5 4 8 8 C 1.42901 * 116.99753 * 0.02562 * 7 6 5 9 9 C 1.40118 * 119.80943 * 359.96705 * 6 5 4 10 10 C 1.47489 * 120.16982 * 179.97438 * 9 6 5 11 11 O 1.21600 * 120.00090 * 359.97438 * 10 9 6 12 12 N 1.34769 * 120.00239 * 180.02562 * 10 9 6 13 13 C 1.39131 * 120.00590 * 185.10411 * 12 10 9 14 14 C 1.39512 * 119.83184 * 34.47595 * 13 12 10 15 15 C 1.36356 * 120.16447 * 180.25923 * 14 13 12 16 16 C 1.40879 * 119.83083 * 359.49366 * 15 14 13 17 17 C 1.41145 * 120.15862 * 180.23452 * 16 15 14 18 18 H 1.07996 * 120.00012 * 25.65670 * 17 16 15 19 19 C 1.39909 * 119.99629 * 205.65635 * 17 16 15 20 20 N 1.30881 * 120.00087 * 16.83725 * 19 17 16 21 21 Si 1.86798 * 119.99963 * 196.83496 * 19 17 16 22 22 H 1.48497 * 109.47065 * 60.00045 * 21 19 17 23 23 H 1.48498 * 109.47178 * 180.02562 * 21 19 17 24 24 H 1.48496 * 109.46939 * 300.00213 * 21 19 17 25 25 C 1.40876 * 119.67629 * 0.52280 * 16 15 14 26 26 C 1.36357 * 119.83008 * 359.73559 * 25 16 15 27 27 C 1.38232 * 119.89806 * 180.27470 * 3 2 1 28 28 H 1.09007 * 109.47104 * 60.00026 * 1 2 3 29 29 H 1.08992 * 109.47476 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47276 * 300.00495 * 1 2 3 31 31 H 1.08001 * 119.83098 * 0.02562 * 4 3 2 32 32 H 1.08003 * 119.92604 * 179.97438 * 5 4 3 33 33 H 1.09003 * 109.46535 * 180.02562 * 8 7 6 34 34 H 1.08993 * 109.47322 * 300.00548 * 8 7 6 35 35 H 1.08997 * 109.46832 * 60.00692 * 8 7 6 36 36 H 0.97006 * 120.00084 * 5.10227 * 12 10 9 37 37 H 1.08008 * 119.91673 * 359.97411 * 14 13 12 38 38 H 1.08004 * 120.08489 * 179.74231 * 15 14 13 39 39 H 0.96999 * 119.99809 * 179.97438 * 20 19 17 40 40 H 1.08003 * 120.08342 * 179.70848 * 25 16 15 41 41 H 1.08001 * 119.91417 * 179.97438 * 26 25 16 42 42 H 1.08000 * 120.08007 * 359.97438 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 1.2876 2.3759 -0.0005 5 6 1.9049 3.6105 -0.0011 6 6 3.2888 3.6973 -0.0017 7 8 3.8947 4.9119 -0.0028 8 6 3.0449 6.0608 -0.0026 9 6 4.0601 2.5274 -0.0011 10 6 5.5326 2.6104 -0.0023 11 8 6.0804 3.6960 -0.0044 12 7 6.2711 1.4830 -0.0023 13 6 7.6563 1.5587 0.1038 14 6 8.2391 2.5585 0.8829 15 6 9.5961 2.6421 0.9873 16 6 10.4096 1.7092 0.3146 17 6 11.8148 1.7863 0.4219 18 1 12.2658 2.2450 1.2893 19 6 12.6235 1.2684 -0.5957 20 7 12.1122 1.0171 -1.7739 21 14 14.4330 0.9358 -0.2725 22 1 14.5658 -0.0514 0.8288 23 1 15.0640 0.3938 -1.5026 24 1 15.1077 2.2012 0.1130 25 6 9.8138 0.7027 -0.4706 26 6 8.4555 0.6348 -0.5699 27 6 3.4269 1.2817 -0.0057 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 0.2094 2.3144 -0.0005 32 1 1.3086 4.5110 -0.0019 33 1 3.6552 6.9640 -0.0040 34 1 2.4150 6.0469 -0.8919 35 1 2.4166 6.0477 0.8880 36 1 5.8369 0.6187 -0.0761 37 1 7.6141 3.2708 1.4010 38 1 10.0461 3.4191 1.5875 39 1 12.6729 0.6584 -2.4795 40 1 10.4313 -0.0131 -0.9930 41 1 7.9973 -0.1360 -1.1718 42 1 4.0148 0.3757 -0.0098 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000008126471.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:34:59 Heat of formation + Delta-G solvation = -51.047103 kcal Electronic energy + Delta-G solvation = -26512.188801 eV Core-core repulsion = 22616.307756 eV Total energy + Delta-G solvation = -3895.881045 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.130 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -40.80830 -39.39559 -38.92724 -37.14075 -36.27163 -34.36189 -32.98682 -31.55380 -29.94142 -29.50400 -28.81132 -27.58882 -27.05628 -25.17550 -23.61112 -22.22182 -21.46536 -20.74472 -19.71279 -18.60594 -17.75398 -17.28246 -17.01069 -16.41505 -16.07717 -15.86266 -15.67076 -15.14588 -14.90647 -14.74641 -14.38642 -13.89490 -13.75664 -13.27406 -13.03969 -13.01843 -12.67566 -12.63605 -12.48916 -12.02983 -11.79833 -11.77288 -11.74293 -11.27522 -11.11932 -11.04484 -10.98308 -10.69359 -10.58840 -9.94975 -9.51831 -9.30836 -9.26811 -9.05557 -8.81124 -7.91254 -7.47747 -6.90557 -6.68512 -4.24462 0.69378 1.25213 2.68075 2.99871 3.05277 3.09371 3.12952 3.16570 3.25863 3.31594 3.77596 3.95423 3.98022 4.42580 4.51625 4.68974 4.76407 4.84202 4.86404 5.00914 5.04750 5.14882 5.17153 5.25731 5.41242 5.50081 5.65967 5.76346 5.95256 6.03136 6.25227 6.27206 6.50247 6.84803 7.01246 7.07739 7.09887 7.25110 7.33761 7.36989 7.65760 7.80233 7.97067 8.09052 8.33826 8.37651 8.64898 8.86455 8.93462 9.07187 10.22818 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.020549 B = 0.002574 C = 0.002345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1362.261409 B =10876.145606 C =11939.695288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.316 6.316 3 C 0.080 3.920 4 C -0.147 4.147 5 C -0.182 4.182 6 C 0.149 3.851 7 O -0.276 6.276 8 C 0.022 3.978 9 C -0.120 4.120 10 C 0.542 3.458 11 O -0.505 6.505 12 N -0.647 5.647 13 C -0.003 4.003 14 C -0.075 4.075 15 C -0.215 4.215 16 C 0.105 3.895 17 C -0.458 4.458 18 H 0.078 0.922 19 C 0.074 3.926 20 N -0.793 5.793 21 Si 0.909 3.091 22 H -0.264 1.264 23 H -0.279 1.279 24 H -0.266 1.266 25 C -0.153 4.153 26 C -0.113 4.113 27 C -0.082 4.082 28 H 0.053 0.947 29 H 0.099 0.901 30 H 0.053 0.947 31 H 0.133 0.867 32 H 0.136 0.864 33 H 0.102 0.898 34 H 0.052 0.948 35 H 0.053 0.947 36 H 0.393 0.607 37 H 0.101 0.899 38 H 0.095 0.905 39 H 0.281 0.719 40 H 0.121 0.879 41 H 0.090 0.910 42 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.694 0.232 1.739 22.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.230 6.230 3 C 0.036 3.964 4 C -0.166 4.166 5 C -0.201 4.201 6 C 0.101 3.899 7 O -0.187 6.187 8 C -0.073 4.073 9 C -0.124 4.124 10 C 0.328 3.672 11 O -0.381 6.381 12 N -0.290 5.290 13 C -0.096 4.096 14 C -0.095 4.095 15 C -0.235 4.235 16 C 0.103 3.897 17 C -0.487 4.487 18 H 0.096 0.904 19 C -0.143 4.143 20 N -0.419 5.419 21 Si 0.734 3.266 22 H -0.188 1.188 23 H -0.204 1.204 24 H -0.190 1.190 25 C -0.173 4.173 26 C -0.133 4.133 27 C -0.101 4.101 28 H 0.072 0.928 29 H 0.118 0.882 30 H 0.072 0.928 31 H 0.150 0.850 32 H 0.154 0.846 33 H 0.120 0.880 34 H 0.071 0.929 35 H 0.071 0.929 36 H 0.227 0.773 37 H 0.120 0.880 38 H 0.113 0.887 39 H 0.092 0.908 40 H 0.139 0.861 41 H 0.109 0.891 42 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -21.939 0.820 1.504 22.005 hybrid contribution -0.099 -0.327 -0.119 0.362 sum -22.037 0.493 1.385 22.086 Atomic orbital electron populations 1.23033 0.78627 1.03944 1.01120 1.86104 1.21096 1.26328 1.89489 1.18653 0.91885 0.84401 1.01505 1.21126 1.00035 0.91596 1.03798 1.20991 0.92894 0.98596 1.07617 1.18936 0.90295 0.85629 0.95023 1.86455 1.33902 1.11278 1.87094 1.23129 0.95815 0.87671 1.00726 1.19345 0.93883 0.90653 1.08546 1.17832 0.85507 0.84965 0.78856 1.90831 1.72119 1.27192 1.47926 1.42895 1.06257 1.07902 1.71989 1.17131 0.80121 1.04604 1.07698 1.20251 0.94827 0.97116 0.97260 1.20650 0.92614 1.01477 1.08723 1.17658 0.93221 0.89051 0.89795 1.19521 0.91174 1.33587 1.04465 0.90425 1.25925 1.01244 0.93022 0.94155 1.69844 1.38308 1.31969 1.01763 0.86353 0.81793 0.79775 0.78705 1.18841 1.20394 1.19031 1.20888 0.92256 1.00278 1.03886 1.20230 0.94383 0.99181 0.99498 1.20431 0.91703 0.97013 1.00992 0.92801 0.88236 0.92793 0.84958 0.84606 0.87999 0.92892 0.92890 0.77262 0.88049 0.88704 0.90846 0.86091 0.89144 0.84006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 9.81 101.05 0.99 1.16 16 2 O -0.32 -3.27 10.49 -19.72 -0.21 -3.48 16 3 C 0.08 0.91 6.67 -39.32 -0.26 0.65 16 4 C -0.15 -1.43 9.02 -39.39 -0.36 -1.78 16 5 C -0.18 -1.95 9.02 -39.50 -0.36 -2.31 16 6 C 0.15 2.16 6.70 -38.72 -0.26 1.90 16 7 O -0.28 -4.30 8.56 -40.84 -0.35 -4.65 16 8 C 0.02 0.21 9.81 101.05 0.99 1.20 16 9 C -0.12 -1.89 5.88 -104.86 -0.62 -2.51 16 10 C 0.54 10.71 7.48 -12.49 -0.09 10.61 16 11 O -0.50 -11.94 12.87 -16.64 -0.21 -12.16 16 12 N -0.65 -12.42 5.25 -10.70 -0.06 -12.48 16 13 C 0.00 -0.08 6.27 -83.60 -0.52 -0.60 16 14 C -0.07 -1.87 8.57 -39.78 -0.34 -2.21 16 15 C -0.21 -5.61 9.74 -39.26 -0.38 -5.99 16 16 C 0.11 2.89 5.57 -106.80 -0.59 2.29 16 17 C -0.46 -12.37 9.04 -37.85 -0.34 -12.71 16 18 H 0.08 2.01 7.90 -52.49 -0.41 1.59 16 19 C 0.07 1.89 5.15 -17.33 -0.09 1.80 16 20 N -0.79 -20.81 10.95 55.55 0.61 -20.20 16 21 Si 0.91 18.88 29.59 -169.99 -5.03 13.85 16 22 H -0.26 -5.41 7.11 56.52 0.40 -5.01 16 23 H -0.28 -5.63 7.11 56.52 0.40 -5.23 16 24 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 25 C -0.15 -4.02 8.63 -39.26 -0.34 -4.36 16 26 C -0.11 -2.67 9.90 -39.79 -0.39 -3.06 16 27 C -0.08 -1.07 9.47 -39.02 -0.37 -1.43 16 28 H 0.05 0.27 7.65 -51.93 -0.40 -0.13 16 29 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.05 0.27 7.65 -51.93 -0.40 -0.13 16 31 H 0.13 0.88 6.27 -52.49 -0.33 0.55 16 32 H 0.14 1.06 6.29 -52.48 -0.33 0.73 16 33 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.05 0.41 7.66 -51.93 -0.40 0.02 16 35 H 0.05 0.41 7.66 -51.93 -0.40 0.01 16 36 H 0.39 6.05 6.86 -40.82 -0.28 5.77 16 37 H 0.10 2.51 6.47 -52.48 -0.34 2.17 16 38 H 0.09 2.35 8.06 -52.48 -0.42 1.93 16 39 H 0.28 6.70 8.30 -40.82 -0.34 6.36 16 40 H 0.12 3.23 6.18 -52.48 -0.32 2.91 16 41 H 0.09 1.87 8.06 -52.49 -0.42 1.45 16 42 H 0.14 1.62 6.42 -52.49 -0.34 1.28 16 LS Contribution 353.46 15.07 5.33 5.33 Total: -1.00 -33.43 353.46 -8.03 -41.46 By element: Atomic # 1 Polarization: 14.45 SS G_CDS: -4.77 Total: 9.68 kcal Atomic # 6 Polarization: -14.01 SS G_CDS: -3.34 Total: -17.34 kcal Atomic # 7 Polarization: -33.23 SS G_CDS: 0.55 Total: -32.68 kcal Atomic # 8 Polarization: -19.52 SS G_CDS: -0.77 Total: -20.29 kcal Atomic # 14 Polarization: 18.88 SS G_CDS: -5.03 Total: 13.85 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -33.43 -8.03 -41.46 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000008126471.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.591 kcal (2) G-P(sol) polarization free energy of solvation -33.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.457 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds